Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00339 * 2 1 4 4 H 1.48505 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47131 * 300.00115 * 3 2 1 6 6 H 1.48496 * 109.47252 * 59.99860 * 3 2 1 7 7 C 1.38813 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00106 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.88939 * 328.88769 * 10 9 7 12 12 C 1.55155 * 111.00276 * 92.80626 * 10 9 7 13 13 C 1.54335 * 103.02040 * 153.38297 * 12 10 9 14 14 N 1.47025 * 107.26774 * 338.13787 * 13 12 10 15 15 C 1.34769 * 125.65065 * 178.85192 * 14 13 12 16 16 O 1.21286 * 119.99908 * 184.79423 * 15 14 13 17 17 C 1.50696 * 120.00090 * 4.79203 * 15 14 13 18 18 H 1.09000 * 109.69413 * 24.73314 * 17 15 14 19 19 C 1.53403 * 109.69614 * 145.28694 * 17 15 14 20 20 O 1.42833 * 108.37145 * 184.45346 * 19 17 15 21 21 C 1.35849 * 117.84226 * 310.72300 * 20 19 17 22 22 C 1.39102 * 118.47555 * 197.58376 * 21 20 19 23 23 C 1.38188 * 120.19897 * 180.55406 * 22 21 20 24 24 F 1.35098 * 120.05041 * 179.72187 * 23 22 21 25 25 C 1.38524 * 119.89960 * 359.43992 * 23 22 21 26 26 C 1.38066 * 119.95910 * 0.18869 * 25 23 22 27 27 C 1.38403 * 121.80137 * 17.39091 * 21 20 19 28 28 C 1.50776 * 121.39370 * 359.36929 * 27 21 20 29 29 C 1.47425 * 108.69808 * 358.58862 * 14 13 12 30 30 H 0.97001 * 119.99610 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99751 * 0.02562 * 9 7 2 32 32 H 1.08995 * 110.72040 * 271.93952 * 12 10 9 33 33 H 1.09001 * 110.72515 * 35.03515 * 12 10 9 34 34 H 1.09001 * 109.99101 * 218.66605 * 13 12 10 35 35 H 1.09002 * 109.78231 * 97.49466 * 13 12 10 36 36 H 1.09002 * 109.68799 * 64.73189 * 19 17 15 37 37 H 1.08998 * 109.71841 * 304.18995 * 19 17 15 38 38 H 1.08003 * 119.89863 * 0.25366 * 22 21 20 39 39 H 1.07994 * 120.02164 * 180.16553 * 25 23 22 40 40 H 1.07996 * 119.82850 * 179.97438 * 26 25 23 41 41 H 1.09006 * 109.43029 * 137.92609 * 28 27 21 42 42 H 1.08997 * 109.43453 * 257.78761 * 28 27 21 43 43 H 1.09002 * 110.36722 * 143.19105 * 29 14 13 44 44 H 1.08998 * 110.36923 * 265.40385 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0069 -3.5573 -0.5286 12 6 2.2756 -4.1746 1.4447 13 6 2.3892 -5.7019 1.2539 14 7 1.7386 -6.0318 -0.0227 15 6 1.6451 -7.2636 -0.5613 16 8 1.1612 -7.4081 -1.6640 17 6 2.1418 -8.4614 0.2064 18 1 2.1266 -8.2452 1.2747 19 6 1.2472 -9.6721 -0.0888 20 8 1.6779 -10.7604 0.7298 21 6 3.0038 -11.0554 0.7471 22 6 3.3998 -12.3022 1.2199 23 6 4.7402 -12.6354 1.2639 24 9 5.1217 -13.8450 1.7290 25 6 5.6917 -11.7293 0.8250 26 6 5.2995 -10.4943 0.3484 27 6 3.9573 -10.1544 0.3059 28 6 3.5690 -8.8000 -0.2311 29 6 1.2000 -4.7928 -0.6127 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 3.1945 -3.7669 1.8659 33 1 1.4214 -3.9281 2.0753 34 1 1.8851 -6.2180 2.0710 35 1 3.4392 -5.9925 1.2208 36 1 1.3354 -9.9462 -1.1401 37 1 0.2101 -9.4278 0.1410 38 1 2.6576 -13.0102 1.5582 39 1 6.7395 -11.9886 0.8561 40 1 6.0431 -9.7894 0.0071 41 1 4.2553 -8.0464 0.1553 42 1 3.6212 -8.8130 -1.3197 43 1 1.3101 -4.8099 -1.6970 44 1 0.1520 -4.6673 -0.3405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018846888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = -79.237479 kcal Electronic energy + Delta-G solvation = -28049.235147 eV Core-core repulsion = 23881.311024 eV Total energy + Delta-G solvation = -4167.924123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.26646 -41.33597 -39.81450 -37.82276 -37.36474 -34.63091 -34.16845 -31.65969 -30.91114 -30.70542 -29.65014 -27.93905 -26.10054 -24.96746 -23.66313 -23.25069 -22.75571 -20.91283 -20.20571 -19.09259 -18.68390 -17.65780 -17.39878 -17.23288 -16.29239 -16.17226 -16.07278 -15.87082 -15.39704 -15.21639 -14.66139 -14.54515 -14.33043 -14.13612 -13.85244 -13.65412 -13.42039 -13.32218 -13.17325 -12.79628 -12.67476 -12.13676 -12.05897 -11.88884 -11.76060 -11.63165 -11.26397 -11.20642 -11.00424 -10.91319 -10.79294 -10.36517 -10.12149 -9.89278 -9.79372 -9.17212 -9.04513 -8.62183 -8.56725 -7.13201 -5.89514 -3.20536 0.68785 0.85955 2.45387 2.66766 2.96587 3.16118 3.36065 3.41986 3.44232 3.96132 4.07648 4.21878 4.25095 4.41560 4.48280 4.52417 4.61911 4.77831 4.92143 4.93017 5.01908 5.13811 5.16314 5.19735 5.25625 5.41342 5.47899 5.50576 5.53297 5.61856 5.64831 5.65893 5.76873 5.86735 5.96066 6.05116 6.12330 6.25637 6.29889 6.41332 6.51559 6.79822 6.94937 7.53625 7.58999 8.06979 8.27657 9.39520 9.92575 10.27251 11.32587 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002099 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.463550 B =13338.956200 C =13900.204027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.714 5.714 10 C 0.173 3.827 11 H 0.067 0.933 12 C -0.156 4.156 13 C 0.099 3.901 14 N -0.608 5.608 15 C 0.537 3.463 16 O -0.541 6.541 17 C -0.144 4.144 18 H 0.106 0.894 19 C 0.081 3.919 20 O -0.307 6.307 21 C 0.162 3.838 22 C -0.186 4.186 23 C 0.130 3.870 24 F -0.136 7.136 25 C -0.185 4.185 26 C -0.052 4.052 27 C -0.164 4.164 28 C -0.064 4.064 29 C 0.095 3.905 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -23.915 3.430 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.198 4.198 13 C -0.024 4.024 14 N -0.341 5.341 15 C 0.324 3.676 16 O -0.419 6.419 17 C -0.166 4.166 18 H 0.124 0.876 19 C 0.006 3.994 20 O -0.220 6.220 21 C 0.117 3.883 22 C -0.206 4.206 23 C 0.111 3.889 24 F -0.114 7.114 25 C -0.203 4.203 26 C -0.070 4.070 27 C -0.166 4.166 28 C -0.102 4.102 29 C -0.028 4.028 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.655 -24.012 2.909 25.690 hybrid contribution 0.279 0.920 0.218 0.985 sum 8.934 -23.093 3.127 24.957 Atomic orbital electron populations 1.69671 1.05171 1.25868 1.56928 1.24788 0.95555 0.97893 1.02409 0.86092 0.78780 0.83845 0.77265 1.20462 1.21745 1.21755 1.19259 0.91078 0.83737 1.43637 0.90887 1.42271 1.05858 0.99341 1.87880 1.21285 0.94818 0.85677 0.92172 0.91482 1.23443 1.03083 0.91163 1.02062 1.22158 0.96849 0.98348 0.85063 1.48467 1.55899 1.06821 1.22930 1.19688 0.79217 0.82781 0.85928 1.90728 1.46129 1.85233 1.19819 1.21949 0.97408 0.94711 1.02500 0.87597 1.22880 0.98382 0.82895 0.95270 1.86044 1.20231 1.50853 1.64858 1.18313 0.83181 0.91836 0.95017 1.20417 0.95075 0.96493 1.08571 1.17250 0.92291 0.81369 0.98021 1.91516 1.91749 1.41989 1.86162 1.21017 0.99808 0.94552 1.04970 1.20753 0.94644 0.95620 0.95998 1.19827 0.93606 0.96682 1.06442 1.20381 0.94286 0.93466 1.02018 1.22665 0.98408 0.82662 0.99038 0.93339 0.77911 0.90564 0.90509 0.91861 0.91757 0.89937 0.86590 0.83858 0.84438 0.84427 0.89018 0.89142 0.90368 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.66 5.24 -51.35 -0.27 -16.93 16 10 C 0.17 3.12 3.72 -65.78 -0.24 2.87 16 11 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 12 C -0.16 -2.32 6.64 -24.89 -0.17 -2.49 16 13 C 0.10 1.15 6.15 -3.06 -0.02 1.14 16 14 N -0.61 -8.37 3.33 -170.51 -0.57 -8.94 16 15 C 0.54 7.21 6.83 -10.99 -0.08 7.13 16 16 O -0.54 -9.12 16.62 5.55 0.09 -9.02 16 17 C -0.14 -1.43 2.39 -91.53 -0.22 -1.65 16 18 H 0.11 0.96 6.97 -51.93 -0.36 0.60 16 19 C 0.08 0.80 5.90 37.37 0.22 1.02 16 20 O -0.31 -3.18 10.27 -19.27 -0.20 -3.38 16 21 C 0.16 1.61 6.47 -39.20 -0.25 1.36 16 22 C -0.19 -1.74 9.91 -39.28 -0.39 -2.13 16 23 C 0.13 1.18 7.30 -39.49 -0.29 0.89 16 24 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 25 C -0.18 -1.42 10.03 -39.54 -0.40 -1.82 16 26 C -0.05 -0.39 9.66 -39.54 -0.38 -0.77 16 27 C -0.16 -1.46 5.75 -104.42 -0.60 -2.06 16 28 C -0.06 -0.56 5.18 -27.81 -0.14 -0.71 16 29 C 0.10 1.57 6.57 -2.53 -0.02 1.56 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.39 9.67 7.76 -40.82 -0.32 9.35 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.64 7.74 -51.93 -0.40 0.24 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 44 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.54 368.32 -8.97 -39.51 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.10 Total: 6.87 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.22 Total: -2.62 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.11 Total: -52.13 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.11 Total: -12.41 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.54 -8.97 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018846888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.727 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds