Wall clock time and date at job start Tue Mar 31 2020 18:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47006 * 299.99504 * 3 2 1 6 6 H 1.48499 * 109.47112 * 60.00005 * 3 2 1 7 7 C 1.38818 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99563 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99677 * 179.72752 * 9 7 2 11 11 H 1.09005 * 110.88646 * 322.84976 * 10 9 7 12 12 C 1.55153 * 111.00878 * 86.72514 * 10 9 7 13 13 C 1.54319 * 102.94257 * 153.57465 * 12 10 9 14 14 N 1.47017 * 107.27689 * 337.81127 * 13 12 10 15 15 C 1.34778 * 125.65406 * 178.98397 * 14 13 12 16 16 O 1.21281 * 120.00085 * 174.76543 * 15 14 13 17 17 C 1.50703 * 119.99615 * 354.75951 * 15 14 13 18 18 H 1.08996 * 109.67749 * 49.89512 * 17 15 14 19 19 C 1.53407 * 109.68446 * 289.36917 * 17 15 14 20 20 C 1.53068 * 108.29522 * 175.56028 * 19 17 15 21 21 C 1.50779 * 109.68173 * 48.22768 * 20 19 17 22 22 C 1.38529 * 118.73801 * 162.16808 * 21 20 19 23 23 C 1.38062 * 120.34725 * 179.83812 * 22 21 20 24 24 C 1.38517 * 119.96041 * 359.96945 * 23 22 21 25 25 F 1.35103 * 120.04751 * 180.10208 * 24 23 22 26 26 C 1.38182 * 119.90702 * 0.08437 * 24 23 22 27 27 C 1.38392 * 121.39221 * 342.13943 * 21 20 19 28 28 O 1.35847 * 121.80464 * 0.52685 * 27 21 20 29 29 C 1.47431 * 108.69793 * 358.93802 * 14 13 12 30 30 H 0.97002 * 119.99391 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00629 * 0.02562 * 9 7 2 32 32 H 1.08990 * 110.72332 * 271.94416 * 12 10 9 33 33 H 1.09012 * 110.71652 * 35.21452 * 12 10 9 34 34 H 1.09007 * 109.88082 * 97.23287 * 13 12 10 35 35 H 1.09000 * 109.88680 * 218.39260 * 13 12 10 36 36 H 1.08998 * 109.70060 * 295.26478 * 19 17 15 37 37 H 1.09001 * 109.69276 * 55.86757 * 19 17 15 38 38 H 1.08999 * 109.43394 * 168.28616 * 20 19 17 39 39 H 1.09000 * 109.43784 * 288.20313 * 20 19 17 40 40 H 1.07994 * 119.82570 * 359.85718 * 22 21 20 41 41 H 1.08004 * 120.01558 * 179.97438 * 23 22 21 42 42 H 1.07992 * 119.90611 * 180.02562 * 26 24 23 43 43 H 1.08993 * 110.36655 * 265.28477 * 29 14 13 44 44 H 1.09010 * 110.36350 * 142.96585 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 -0.0049 11 1 2.9530 -3.5862 -0.6232 12 6 2.4131 -4.1003 1.4388 13 6 2.5166 -5.6349 1.3134 14 7 1.7446 -6.0290 0.1260 15 6 1.6036 -7.2866 -0.3377 16 8 0.8647 -7.5087 -1.2734 17 6 2.3644 -8.4168 0.3066 18 1 2.2267 -8.3828 1.3873 19 6 3.8562 -8.2927 -0.0285 20 6 4.6117 -9.3869 0.7297 21 6 3.9185 -10.7115 0.5339 22 6 4.6171 -11.8759 0.8083 23 6 4.0135 -13.1067 0.6438 24 6 2.7025 -13.1808 0.2028 25 9 2.1096 -14.3842 0.0431 26 6 2.0019 -12.0222 -0.0733 27 6 2.6096 -10.7815 0.0898 28 8 1.8914 -9.6655 -0.2003 29 6 1.1491 -4.8206 -0.4731 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 3.3666 -3.6735 1.7498 33 1 1.6202 -3.8227 2.1336 34 1 3.5596 -5.9273 1.1914 35 1 2.0982 -6.1085 2.2015 36 1 4.0038 -8.4199 -1.1009 37 1 4.2216 -7.3130 0.2797 38 1 5.6318 -9.4521 0.3514 39 1 4.6336 -9.1433 1.7919 40 1 5.6390 -11.8205 1.1530 41 1 4.5633 -14.0111 0.8589 42 1 0.9797 -12.0801 -0.4167 43 1 0.1320 -4.6781 -0.1082 44 1 1.1561 -4.8935 -1.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019146985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:49 Heat of formation + Delta-G solvation = -73.433037 kcal Electronic energy + Delta-G solvation = -28125.428546 eV Core-core repulsion = 23957.756122 eV Total energy + Delta-G solvation = -4167.672424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.23665 -41.33930 -39.75937 -37.86733 -37.05364 -34.84541 -34.14910 -31.82122 -30.93653 -30.62754 -29.67185 -28.08917 -26.42206 -24.28701 -23.74133 -23.18416 -22.90397 -20.83875 -20.23178 -19.51851 -18.68057 -17.52224 -17.33733 -17.23729 -16.25331 -16.18595 -16.05904 -15.86208 -15.48060 -15.14060 -14.79229 -14.45012 -14.22346 -13.98270 -13.82939 -13.64946 -13.51209 -13.28900 -13.14814 -12.79632 -12.75646 -12.13236 -12.09838 -11.85762 -11.69306 -11.52619 -11.47772 -11.22859 -10.97831 -10.90088 -10.76649 -10.38675 -10.10915 -9.85809 -9.74038 -9.15249 -9.03796 -8.60240 -8.58003 -7.12597 -5.88878 -3.20080 0.70549 0.87682 2.23863 2.48440 3.10996 3.29624 3.36278 3.42049 3.44443 3.98590 4.10238 4.13668 4.25478 4.38437 4.48174 4.53545 4.59718 4.72569 4.78262 4.89809 5.01368 5.05965 5.14157 5.17347 5.31799 5.36123 5.48014 5.50781 5.56098 5.64416 5.65630 5.69887 5.78984 5.85062 5.96323 6.04066 6.10509 6.25786 6.30405 6.41135 6.49188 6.80650 6.97789 7.49243 7.59283 8.08090 8.28164 9.40046 9.93186 10.27823 11.33205 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.002069 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.181011 B =13530.538620 C =14062.652081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.155 4.155 13 C 0.094 3.906 14 N -0.608 5.608 15 C 0.534 3.466 16 O -0.519 6.519 17 C 0.081 3.919 18 H 0.099 0.901 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.173 4.173 22 C -0.054 4.054 23 C -0.187 4.187 24 C 0.132 3.868 25 F -0.135 7.135 26 C -0.184 4.184 27 C 0.167 3.833 28 O -0.284 6.284 29 C 0.102 3.898 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.260 -24.098 5.035 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.029 4.029 14 N -0.344 5.344 15 C 0.320 3.680 16 O -0.395 6.395 17 C 0.021 3.979 18 H 0.116 0.884 19 C -0.190 4.190 20 C -0.111 4.111 21 C -0.174 4.174 22 C -0.072 4.072 23 C -0.206 4.206 24 C 0.112 3.888 25 F -0.114 7.114 26 C -0.203 4.203 27 C 0.121 3.879 28 O -0.197 6.197 29 C -0.021 4.021 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.090 0.910 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.747 -24.145 4.358 26.786 hybrid contribution 0.134 0.716 0.218 0.760 sum 10.881 -23.429 4.576 26.235 Atomic orbital electron populations 1.69674 1.05170 1.25865 1.56885 1.24794 0.95548 0.97886 1.02423 0.86094 0.78760 0.83874 0.77260 1.20469 1.21754 1.21777 1.19233 0.91067 0.83693 1.43656 0.90880 1.42266 1.05871 0.99288 1.88088 1.21291 0.94195 0.85630 0.92850 0.91776 1.23431 1.03078 0.90859 1.02220 1.22291 0.95251 0.98209 0.87163 1.48286 1.51271 1.05676 1.29125 1.19395 0.82526 0.82091 0.83957 1.90756 1.37553 1.82708 1.28437 1.22247 0.94472 0.82384 0.98783 0.88365 1.22277 0.92661 1.01177 1.02934 1.20497 0.99318 0.89930 1.01332 1.19927 0.93572 0.96832 1.07075 1.20728 0.99669 0.90275 0.96519 1.21008 0.93979 0.99433 1.06164 1.17225 0.91524 0.79984 1.00046 1.91520 1.84009 1.42665 1.93166 1.20440 1.02232 0.89038 1.08632 1.18331 0.89292 0.86113 0.94166 1.86074 1.49525 1.12791 1.71281 1.22598 0.97803 0.82833 0.98851 0.93334 0.77873 0.90493 0.90341 0.91547 0.91767 0.89444 0.88284 0.89094 0.89704 0.84553 0.84516 0.83705 0.90986 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -16.62 5.28 -51.35 -0.27 -16.89 16 10 C 0.17 3.08 3.69 -65.78 -0.24 2.84 16 11 H 0.06 1.16 8.13 -51.93 -0.42 0.73 16 12 C -0.15 -2.25 6.65 -24.90 -0.17 -2.41 16 13 C 0.09 1.05 6.19 -3.07 -0.02 1.03 16 14 N -0.61 -8.57 3.33 -170.52 -0.57 -9.13 16 15 C 0.53 8.00 7.18 -10.98 -0.08 7.92 16 16 O -0.52 -10.05 16.84 -14.06 -0.24 -10.29 16 17 C 0.08 0.91 2.59 -27.67 -0.07 0.84 16 18 H 0.10 0.90 7.95 -51.93 -0.41 0.49 16 19 C -0.15 -1.30 5.40 -26.49 -0.14 -1.45 16 20 C -0.07 -0.48 5.86 -27.81 -0.16 -0.64 16 21 C -0.17 -1.48 5.75 -104.42 -0.60 -2.08 16 22 C -0.05 -0.38 9.66 -39.54 -0.38 -0.76 16 23 C -0.19 -1.44 10.03 -39.54 -0.40 -1.84 16 24 C 0.13 1.28 7.30 -39.50 -0.29 0.99 16 25 F -0.14 -1.38 17.27 2.25 0.04 -1.35 16 26 C -0.18 -1.97 9.92 -39.27 -0.39 -2.36 16 27 C 0.17 1.85 6.47 -39.20 -0.25 1.60 16 28 O -0.28 -3.78 9.48 -38.88 -0.37 -4.15 16 29 C 0.10 1.69 6.51 -2.53 -0.02 1.68 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.39 9.69 7.71 -40.82 -0.31 9.37 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.07 0.58 5.99 -51.93 -0.31 0.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.71 5.79 -51.93 -0.30 0.41 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 44 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.02 365.61 -9.60 -41.62 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.95 Total: 6.09 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.46 Total: -1.54 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.11 Total: -52.29 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.61 Total: -14.44 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -9.60 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019146985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.815 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds