Wall clock time and date at job start Tue Mar 31 2020 18:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47006 * 299.99504 * 3 2 1 6 6 H 1.48499 * 109.47112 * 60.00005 * 3 2 1 7 7 C 1.38818 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99563 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99677 * 179.72752 * 9 7 2 11 11 H 1.09005 * 110.88646 * 322.84976 * 10 9 7 12 12 C 1.55153 * 111.00878 * 86.72514 * 10 9 7 13 13 C 1.54319 * 102.94257 * 153.57465 * 12 10 9 14 14 N 1.47017 * 107.27689 * 337.81127 * 13 12 10 15 15 C 1.34778 * 125.65406 * 178.98397 * 14 13 12 16 16 O 1.21281 * 120.00085 * 174.76543 * 15 14 13 17 17 C 1.50703 * 119.99615 * 354.75951 * 15 14 13 18 18 H 1.08996 * 109.67749 * 49.89512 * 17 15 14 19 19 C 1.53407 * 109.68446 * 289.36917 * 17 15 14 20 20 C 1.53068 * 108.29522 * 175.56028 * 19 17 15 21 21 C 1.50779 * 109.68173 * 48.22768 * 20 19 17 22 22 C 1.38529 * 118.73801 * 162.16808 * 21 20 19 23 23 C 1.38062 * 120.34725 * 179.83812 * 22 21 20 24 24 C 1.38517 * 119.96041 * 359.96945 * 23 22 21 25 25 F 1.35103 * 120.04751 * 180.10208 * 24 23 22 26 26 C 1.38182 * 119.90702 * 0.08437 * 24 23 22 27 27 C 1.38392 * 121.39221 * 342.13943 * 21 20 19 28 28 O 1.35847 * 121.80464 * 0.52685 * 27 21 20 29 29 C 1.47431 * 108.69793 * 358.93802 * 14 13 12 30 30 H 0.97002 * 119.99391 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00629 * 0.02562 * 9 7 2 32 32 H 1.08990 * 110.72332 * 271.94416 * 12 10 9 33 33 H 1.09012 * 110.71652 * 35.21452 * 12 10 9 34 34 H 1.09007 * 109.88082 * 97.23287 * 13 12 10 35 35 H 1.09000 * 109.88680 * 218.39260 * 13 12 10 36 36 H 1.08998 * 109.70060 * 295.26478 * 19 17 15 37 37 H 1.09001 * 109.69276 * 55.86757 * 19 17 15 38 38 H 1.08999 * 109.43394 * 168.28616 * 20 19 17 39 39 H 1.09000 * 109.43784 * 288.20313 * 20 19 17 40 40 H 1.07994 * 119.82570 * 359.85718 * 22 21 20 41 41 H 1.08004 * 120.01558 * 179.97438 * 23 22 21 42 42 H 1.07992 * 119.90611 * 180.02562 * 26 24 23 43 43 H 1.08993 * 110.36655 * 265.28477 * 29 14 13 44 44 H 1.09010 * 110.36350 * 142.96585 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 -0.0049 11 1 2.9530 -3.5862 -0.6232 12 6 2.4131 -4.1003 1.4388 13 6 2.5166 -5.6349 1.3134 14 7 1.7446 -6.0290 0.1260 15 6 1.6036 -7.2866 -0.3377 16 8 0.8647 -7.5087 -1.2734 17 6 2.3644 -8.4168 0.3066 18 1 2.2267 -8.3828 1.3873 19 6 3.8562 -8.2927 -0.0285 20 6 4.6117 -9.3869 0.7297 21 6 3.9185 -10.7115 0.5339 22 6 4.6171 -11.8759 0.8083 23 6 4.0135 -13.1067 0.6438 24 6 2.7025 -13.1808 0.2028 25 9 2.1096 -14.3842 0.0431 26 6 2.0019 -12.0222 -0.0733 27 6 2.6096 -10.7815 0.0898 28 8 1.8914 -9.6655 -0.2003 29 6 1.1491 -4.8206 -0.4731 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 3.3666 -3.6735 1.7498 33 1 1.6202 -3.8227 2.1336 34 1 3.5596 -5.9273 1.1914 35 1 2.0982 -6.1085 2.2015 36 1 4.0038 -8.4199 -1.1009 37 1 4.2216 -7.3130 0.2797 38 1 5.6318 -9.4521 0.3514 39 1 4.6336 -9.1433 1.7919 40 1 5.6390 -11.8205 1.1530 41 1 4.5633 -14.0111 0.8589 42 1 0.9797 -12.0801 -0.4167 43 1 0.1320 -4.6781 -0.1082 44 1 1.1561 -4.8935 -1.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019146985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:49 Heat of formation + Delta-G solvation = -92.730413 kcal Electronic energy + Delta-G solvation = -28126.265343 eV Core-core repulsion = 23957.756122 eV Total energy + Delta-G solvation = -4168.509221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97794 -42.16948 -40.84331 -38.91302 -38.10571 -36.05494 -35.32990 -33.39621 -31.83695 -31.39565 -30.97163 -29.40734 -27.38471 -25.52330 -24.95594 -24.12730 -23.81291 -21.70498 -21.51962 -20.54602 -19.46807 -19.27798 -18.47835 -18.00732 -17.39134 -17.09557 -16.99049 -16.64982 -16.47986 -16.31395 -15.81722 -15.59147 -15.39015 -15.13290 -14.72634 -14.66306 -14.57329 -14.34474 -14.08718 -13.92426 -13.84756 -13.41037 -13.12730 -13.02824 -12.89968 -12.70173 -12.40506 -12.33888 -12.22552 -12.11095 -12.01266 -11.75671 -11.68008 -11.54313 -10.95252 -10.92054 -9.82030 -9.77867 -9.26843 -9.04725 -7.94533 -5.24768 0.05297 0.21797 1.26058 1.36129 1.50638 1.51324 1.60938 2.29556 2.51387 2.58312 3.18289 3.35747 3.39725 3.43518 3.63424 3.68398 3.74178 3.79266 3.87685 3.98739 4.04669 4.08683 4.20210 4.26040 4.30092 4.44053 4.48436 4.50239 4.62606 4.76814 4.90106 4.94632 4.98815 5.00391 5.05109 5.11281 5.12632 5.18173 5.26918 5.36452 5.45061 5.55875 5.68397 6.21603 6.26192 6.38730 6.92158 7.32895 8.04548 8.27625 9.29082 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.002069 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.181011 B =13530.538620 C =14062.652081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.085 0.915 9 N -0.731 5.731 10 C 0.166 3.834 11 H 0.067 0.933 12 C -0.144 4.144 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.529 3.471 16 O -0.577 6.577 17 C 0.085 3.915 18 H 0.127 0.873 19 C -0.148 4.148 20 C -0.069 4.069 21 C -0.169 4.169 22 C -0.044 4.044 23 C -0.179 4.179 24 C 0.114 3.886 25 F -0.144 7.144 26 C -0.206 4.206 27 C 0.140 3.860 28 O -0.320 6.320 29 C 0.108 3.892 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.129 0.871 43 H 0.056 0.944 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.663 -25.315 7.209 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.227 1.227 6 H -0.223 1.223 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.371 5.371 10 C 0.056 3.944 11 H 0.085 0.915 12 C -0.184 4.184 13 C -0.024 4.024 14 N -0.338 5.338 15 C 0.318 3.682 16 O -0.456 6.456 17 C 0.026 3.974 18 H 0.144 0.856 19 C -0.186 4.186 20 C -0.105 4.105 21 C -0.171 4.171 22 C -0.062 4.062 23 C -0.198 4.198 24 C 0.094 3.906 25 F -0.123 7.123 26 C -0.225 4.225 27 C 0.095 3.905 28 O -0.234 6.234 29 C -0.015 4.015 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.147 0.853 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.226 -25.410 6.568 30.342 hybrid contribution -1.226 0.973 -0.492 1.641 sum 14.000 -24.437 6.076 28.811 Atomic orbital electron populations 1.69836 1.06782 1.25998 1.59545 1.25603 0.96320 1.01269 1.03793 0.85069 0.78531 0.79788 0.76328 1.18413 1.22693 1.22274 1.19651 0.91684 0.84538 1.40761 0.89684 1.42451 1.05473 1.00675 1.88452 1.21465 0.93712 0.83778 0.95398 0.91478 1.23218 1.03166 0.93408 0.98634 1.22503 0.97380 0.95665 0.86805 1.48293 1.51062 1.04759 1.29655 1.20216 0.81879 0.82904 0.83226 1.90726 1.40140 1.83606 1.31141 1.22332 0.95407 0.80327 0.99375 0.85612 1.22307 0.90619 1.03255 1.02370 1.20633 0.99661 0.87442 1.02766 1.20282 0.92358 0.98827 1.05584 1.21176 1.01060 0.89020 0.94947 1.21376 0.92848 1.01086 1.04472 1.17443 0.92599 0.79284 1.01237 1.91491 1.84384 1.43028 1.93398 1.20495 1.02118 0.90058 1.09869 1.18542 0.90637 0.85186 0.96132 1.86011 1.51078 1.13897 1.72366 1.22279 0.97172 0.84117 0.97975 0.94117 0.79506 0.88894 0.91986 0.87445 0.88939 0.91284 0.86255 0.86411 0.86856 0.80523 0.82071 0.85254 0.92560 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.23 -12.13 9.98 84.04 0.84 -11.29 16 8 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -34.44 5.28 -316.37 -1.67 -36.11 16 10 C 0.17 5.83 3.69 46.38 0.17 6.00 16 11 H 0.07 2.33 8.13 -2.38 -0.02 2.31 16 12 C -0.14 -3.81 6.65 31.78 0.21 -3.60 16 13 C 0.10 1.81 6.19 86.73 0.54 2.35 16 14 N -0.60 -16.25 3.33 -811.78 -2.70 -18.95 16 15 C 0.53 15.69 7.18 87.66 0.63 16.32 16 16 O -0.58 -23.43 16.84 15.72 0.26 -23.17 16 17 C 0.08 1.75 2.59 29.99 0.08 1.83 16 18 H 0.13 1.86 7.95 -2.39 -0.02 1.84 16 19 C -0.15 -1.98 5.40 30.75 0.17 -1.82 16 20 C -0.07 -0.52 5.86 29.90 0.18 -0.35 16 21 C -0.17 -2.32 5.75 -19.73 -0.11 -2.43 16 22 C -0.04 -0.42 9.66 22.30 0.22 -0.20 16 23 C -0.18 -2.23 10.03 22.29 0.22 -2.01 16 24 C 0.11 2.15 7.30 22.32 0.16 2.31 16 25 F -0.14 -2.99 17.27 44.97 0.78 -2.21 16 26 C -0.21 -4.58 9.92 22.47 0.22 -4.36 16 27 C 0.14 3.02 6.47 22.52 0.15 3.16 16 28 O -0.32 -8.58 9.48 -73.07 -0.69 -9.27 16 29 C 0.11 3.69 6.51 86.85 0.57 4.25 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.37 19.42 7.71 -92.71 -0.71 18.70 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.11 1.21 5.99 -2.38 -0.01 1.19 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.12 1.08 5.79 -2.39 -0.01 1.06 16 38 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.06 2.08 8.00 -2.39 -0.02 2.06 16 44 H 0.06 2.24 8.09 -2.38 -0.02 2.22 16 Total: -1.00 -75.37 365.61 3.31 -72.07 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.32 Total: 22.82 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.70 Total: 6.35 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -4.09 Total: -112.85 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.43 Total: -32.44 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.37 3.31 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019146985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.664 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds