Wall clock time and date at job start Tue Mar 31 2020 18:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47265 * 240.00036 * 3 2 1 5 5 H 1.48498 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47319 * 119.99977 * 3 2 1 7 7 C 1.38815 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99695 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.91943 * 37.45062 * 10 9 7 12 12 C 1.55158 * 111.00220 * 161.35143 * 10 9 7 13 13 C 1.54341 * 103.01822 * 153.38150 * 12 10 9 14 14 N 1.47019 * 107.26872 * 338.13685 * 13 12 10 15 15 C 1.34774 * 125.64936 * 178.85339 * 14 13 12 16 16 O 1.21703 * 119.99805 * 179.69338 * 15 14 13 17 17 C 1.46573 * 120.00111 * 359.69066 * 15 14 13 18 18 C 1.36271 * 125.49107 * 179.97438 * 17 15 14 19 19 C 1.38438 * 113.81936 * 180.02562 * 18 17 15 20 20 C 1.33813 * 114.16446 * 359.67906 * 19 18 17 21 21 S 1.70747 * 111.46295 * 0.44772 * 20 19 18 22 22 C 1.52639 * 124.25925 * 180.49870 * 20 19 18 23 23 C 1.53104 * 107.61899 * 293.50078 * 22 20 19 24 24 C 1.51056 * 111.17362 * 80.70613 * 23 22 20 25 25 C 1.50978 * 115.78948 * 288.17564 * 24 23 22 26 26 C 1.52931 * 111.54245 * 72.35460 * 25 24 23 27 27 C 1.47430 * 108.69792 * 358.59005 * 14 13 12 28 28 H 0.97003 * 120.00575 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.72360 * 271.93258 * 12 10 9 31 31 H 1.08993 * 110.72447 * 35.21317 * 12 10 9 32 32 H 1.09004 * 109.98766 * 218.66280 * 13 12 10 33 33 H 1.08999 * 109.77819 * 97.50077 * 13 12 10 34 34 H 1.08007 * 123.09088 * 0.02740 * 18 17 15 35 35 H 1.09000 * 109.82951 * 173.97278 * 22 20 19 36 36 H 1.09003 * 109.88311 * 53.06116 * 22 20 19 37 37 H 1.09003 * 109.14083 * 320.26842 * 23 22 20 38 38 H 1.09000 * 109.13935 * 201.14278 * 23 22 20 39 39 H 1.09002 * 108.21971 * 49.81859 * 24 23 22 40 40 H 1.09007 * 108.21651 * 166.53883 * 24 23 22 41 41 H 1.08998 * 109.06628 * 192.88344 * 25 24 23 42 42 H 1.08998 * 109.06227 * 311.82225 * 25 24 23 43 43 H 1.09004 * 109.81846 * 159.24383 * 26 25 24 44 44 H 1.08995 * 109.88152 * 38.34432 * 26 25 24 45 45 H 1.09000 * 110.36362 * 143.20006 * 27 14 13 46 46 H 1.09008 * 110.36405 * 265.39895 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9528 -3.5895 0.6186 12 6 1.1478 -4.8246 0.4626 13 6 1.7801 -6.0526 -0.2260 14 7 2.5594 -5.5580 -1.3704 15 6 3.2828 -6.3187 -2.2156 16 8 3.8867 -5.7998 -3.1361 17 6 3.3424 -7.7709 -2.0263 18 6 4.0358 -8.6433 -2.8107 19 6 3.9235 -9.9643 -2.4121 20 6 3.1617 -10.1462 -1.3271 21 16 2.5315 -8.6675 -0.7511 22 6 2.8915 -11.5043 -0.6848 23 6 2.0646 -12.3289 -1.6750 24 6 2.9429 -12.9477 -2.7368 25 6 3.5086 -11.9925 -3.7600 26 6 4.6061 -11.1125 -3.1603 27 6 2.4133 -4.0928 -1.4439 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3880 -0.0005 30 1 1.1774 -4.9300 1.5471 31 1 0.1249 -4.6770 0.1163 32 1 0.9987 -6.7282 -0.5739 33 1 2.4364 -6.5704 0.4734 34 1 4.6193 -8.3326 -3.6648 35 1 2.3332 -11.3706 0.2417 36 1 3.8342 -12.0110 -0.4784 37 1 1.3289 -11.6815 -2.1524 38 1 1.5453 -13.1204 -1.1347 39 1 3.7748 -13.4485 -2.2415 40 1 2.3604 -13.7045 -3.2624 41 1 3.9244 -12.5646 -4.5894 42 1 2.7067 -11.3562 -4.1345 43 1 5.2352 -10.7129 -3.9557 44 1 5.2123 -11.6963 -2.4677 45 1 3.3502 -3.6336 -1.7594 46 1 1.6105 -3.8257 -2.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019735911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:09 Heat of formation + Delta-G solvation = -5.782400 kcal Electronic energy + Delta-G solvation = -26048.976218 eV Core-core repulsion = 22450.450522 eV Total energy + Delta-G solvation = -3598.525696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.92094 -39.34392 -37.32764 -35.69884 -34.18651 -32.59064 -31.71357 -30.48379 -29.68613 -27.85420 -25.73193 -25.43688 -24.00796 -22.84653 -22.07200 -20.86046 -20.21743 -19.65589 -18.20768 -18.01876 -17.23976 -16.21158 -16.08111 -15.81841 -15.24305 -14.75837 -14.58711 -14.26155 -14.20255 -13.85276 -13.64645 -13.53403 -13.40500 -13.22939 -12.80193 -12.60654 -12.41992 -12.25643 -12.19029 -11.77022 -11.72801 -11.44214 -11.14381 -11.07321 -11.02290 -10.91747 -10.88923 -10.74824 -10.52765 -10.35849 -10.07155 -9.88180 -9.75274 -9.03390 -8.82535 -8.48933 -8.31537 -7.10246 -5.85015 -3.16063 0.49428 1.40519 1.83192 2.27165 3.12374 3.31691 3.42168 3.46653 3.47742 4.24388 4.41068 4.47370 4.53526 4.60022 4.67520 4.78946 4.85351 4.99052 5.07171 5.12656 5.19020 5.24526 5.30335 5.33632 5.44550 5.45052 5.58923 5.62416 5.69579 5.70929 5.75850 5.78371 5.83277 5.86379 5.88996 5.99648 6.08371 6.17867 6.20684 6.32841 6.34617 6.47995 6.58544 6.85109 7.64651 7.68595 8.27997 8.32730 9.44545 9.96734 10.31857 11.36860 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.002328 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.789127 B =12023.108527 C =12601.106323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.173 3.827 11 H 0.066 0.934 12 C -0.134 4.134 13 C 0.092 3.908 14 N -0.609 5.609 15 C 0.597 3.403 16 O -0.536 6.536 17 C -0.255 4.255 18 C -0.055 4.055 19 C -0.118 4.118 20 C -0.213 4.213 21 S 0.209 5.791 22 C -0.045 4.045 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.053 4.053 27 C 0.084 3.916 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -28.841 -1.236 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.173 4.173 13 C -0.033 4.033 14 N -0.342 5.342 15 C 0.385 3.615 16 O -0.415 6.415 17 C -0.376 4.376 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.332 4.332 21 S 0.480 5.520 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.093 4.093 27 C -0.041 4.041 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.839 -27.998 -0.518 28.265 hybrid contribution 1.038 0.491 -1.296 1.732 sum 4.877 -27.507 -1.814 27.995 Atomic orbital electron populations 1.69645 1.05162 1.26081 1.56873 1.24771 0.95540 0.97865 1.02280 0.86239 0.78562 0.83211 0.78000 1.21063 1.21625 1.21119 1.19209 0.91130 0.83854 1.43817 0.90952 1.42287 1.05790 0.99323 1.87691 1.21311 0.94647 0.86087 0.91939 0.91623 1.22873 1.00392 0.93536 1.00492 1.22127 0.95054 0.97812 0.88307 1.48395 1.47698 1.09541 1.28572 1.16600 0.79104 0.84031 0.81728 1.90824 1.45646 1.73384 1.31690 1.24376 1.10902 0.97444 1.04838 1.20710 0.97826 0.90872 0.99410 1.19298 1.01910 0.94625 0.97251 1.24819 1.04887 1.01747 1.01746 1.83398 1.46781 0.93844 1.27997 1.20597 1.00910 0.89576 0.97290 1.21182 0.98166 0.99190 0.96598 1.20799 0.99480 0.98352 0.96840 1.21122 0.98476 0.97772 0.97899 1.20736 0.96525 0.93495 0.98517 1.23477 1.02209 0.76345 1.02082 0.93271 0.77792 0.89824 0.90144 0.91243 0.91153 0.83418 0.90763 0.89954 0.91619 0.91338 0.92346 0.92347 0.91643 0.91756 0.90766 0.90837 0.90808 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.75 9.98 -15.06 -0.15 -6.90 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.08 5.28 -51.35 -0.27 -17.35 16 10 C 0.17 3.30 3.69 -65.79 -0.24 3.06 16 11 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 12 C -0.13 -1.98 6.57 -24.89 -0.16 -2.14 16 13 C 0.09 1.22 5.17 -3.06 -0.02 1.21 16 14 N -0.61 -10.19 3.33 -172.08 -0.57 -10.77 16 15 C 0.60 10.50 7.82 -12.90 -0.10 10.40 16 16 O -0.54 -11.28 17.09 5.19 0.09 -11.19 16 17 C -0.26 -3.60 6.37 -36.93 -0.24 -3.83 16 18 C -0.05 -0.70 9.78 -40.22 -0.39 -1.09 16 19 C -0.12 -1.22 5.06 -104.89 -0.53 -1.75 16 20 C -0.21 -2.04 5.46 -34.89 -0.19 -2.23 16 21 S 0.21 2.21 18.38 -107.50 -1.98 0.23 16 22 C -0.04 -0.31 5.87 -26.86 -0.16 -0.47 16 23 C -0.11 -0.71 5.60 -27.66 -0.15 -0.86 16 24 C -0.12 -0.69 5.14 -28.73 -0.15 -0.84 16 25 C -0.11 -0.78 5.56 -27.78 -0.15 -0.94 16 26 C -0.05 -0.41 5.81 -26.71 -0.16 -0.57 16 27 C 0.08 1.61 6.60 -2.53 -0.02 1.60 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 9.78 7.71 -40.82 -0.31 9.46 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 32 H 0.07 0.82 7.01 -51.93 -0.36 0.46 16 33 H 0.07 0.82 6.81 -51.93 -0.35 0.47 16 34 H 0.15 1.86 8.05 -52.48 -0.42 1.44 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 37 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 40 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 43 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 44 H 0.07 0.50 7.88 -51.93 -0.41 0.09 16 45 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 46 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -31.69 374.05 -11.55 -43.24 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.25 Total: 5.42 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.91 Total: -5.66 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.12 Total: -54.80 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.98 Total: 0.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.69 -11.55 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019735911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds