Wall clock time and date at job start Tue Mar 31 2020 18:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47265 * 240.00036 * 3 2 1 5 5 H 1.48498 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47319 * 119.99977 * 3 2 1 7 7 C 1.38815 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99695 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.91943 * 37.45062 * 10 9 7 12 12 C 1.55158 * 111.00220 * 161.35143 * 10 9 7 13 13 C 1.54341 * 103.01822 * 153.38150 * 12 10 9 14 14 N 1.47019 * 107.26872 * 338.13685 * 13 12 10 15 15 C 1.34774 * 125.64936 * 178.85339 * 14 13 12 16 16 O 1.21703 * 119.99805 * 179.69338 * 15 14 13 17 17 C 1.46573 * 120.00111 * 359.69066 * 15 14 13 18 18 C 1.36271 * 125.49107 * 179.97438 * 17 15 14 19 19 C 1.38438 * 113.81936 * 180.02562 * 18 17 15 20 20 C 1.33813 * 114.16446 * 359.67906 * 19 18 17 21 21 S 1.70747 * 111.46295 * 0.44772 * 20 19 18 22 22 C 1.52639 * 124.25925 * 180.49870 * 20 19 18 23 23 C 1.53104 * 107.61899 * 293.50078 * 22 20 19 24 24 C 1.51056 * 111.17362 * 80.70613 * 23 22 20 25 25 C 1.50978 * 115.78948 * 288.17564 * 24 23 22 26 26 C 1.52931 * 111.54245 * 72.35460 * 25 24 23 27 27 C 1.47430 * 108.69792 * 358.59005 * 14 13 12 28 28 H 0.97003 * 120.00575 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.72360 * 271.93258 * 12 10 9 31 31 H 1.08993 * 110.72447 * 35.21317 * 12 10 9 32 32 H 1.09004 * 109.98766 * 218.66280 * 13 12 10 33 33 H 1.08999 * 109.77819 * 97.50077 * 13 12 10 34 34 H 1.08007 * 123.09088 * 0.02740 * 18 17 15 35 35 H 1.09000 * 109.82951 * 173.97278 * 22 20 19 36 36 H 1.09003 * 109.88311 * 53.06116 * 22 20 19 37 37 H 1.09003 * 109.14083 * 320.26842 * 23 22 20 38 38 H 1.09000 * 109.13935 * 201.14278 * 23 22 20 39 39 H 1.09002 * 108.21971 * 49.81859 * 24 23 22 40 40 H 1.09007 * 108.21651 * 166.53883 * 24 23 22 41 41 H 1.08998 * 109.06628 * 192.88344 * 25 24 23 42 42 H 1.08998 * 109.06227 * 311.82225 * 25 24 23 43 43 H 1.09004 * 109.81846 * 159.24383 * 26 25 24 44 44 H 1.08995 * 109.88152 * 38.34432 * 26 25 24 45 45 H 1.09000 * 110.36362 * 143.20006 * 27 14 13 46 46 H 1.09008 * 110.36405 * 265.39895 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9528 -3.5895 0.6186 12 6 1.1478 -4.8246 0.4626 13 6 1.7801 -6.0526 -0.2260 14 7 2.5594 -5.5580 -1.3704 15 6 3.2828 -6.3187 -2.2156 16 8 3.8867 -5.7998 -3.1361 17 6 3.3424 -7.7709 -2.0263 18 6 4.0358 -8.6433 -2.8107 19 6 3.9235 -9.9643 -2.4121 20 6 3.1617 -10.1462 -1.3271 21 16 2.5315 -8.6675 -0.7511 22 6 2.8915 -11.5043 -0.6848 23 6 2.0646 -12.3289 -1.6750 24 6 2.9429 -12.9477 -2.7368 25 6 3.5086 -11.9925 -3.7600 26 6 4.6061 -11.1125 -3.1603 27 6 2.4133 -4.0928 -1.4439 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3880 -0.0005 30 1 1.1774 -4.9300 1.5471 31 1 0.1249 -4.6770 0.1163 32 1 0.9987 -6.7282 -0.5739 33 1 2.4364 -6.5704 0.4734 34 1 4.6193 -8.3326 -3.6648 35 1 2.3332 -11.3706 0.2417 36 1 3.8342 -12.0110 -0.4784 37 1 1.3289 -11.6815 -2.1524 38 1 1.5453 -13.1204 -1.1347 39 1 3.7748 -13.4485 -2.2415 40 1 2.3604 -13.7045 -3.2624 41 1 3.9244 -12.5646 -4.5894 42 1 2.7067 -11.3562 -4.1345 43 1 5.2352 -10.7129 -3.9557 44 1 5.2123 -11.6963 -2.4677 45 1 3.3502 -3.6336 -1.7594 46 1 1.6105 -3.8257 -2.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019735911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:08 Heat of formation + Delta-G solvation = -23.886042 kcal Electronic energy + Delta-G solvation = -26049.761251 eV Core-core repulsion = 22450.450522 eV Total energy + Delta-G solvation = -3599.310729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20163 -40.18537 -38.72850 -36.45736 -36.01147 -33.48364 -33.15045 -31.54400 -31.09989 -29.32065 -26.83525 -26.16594 -25.54753 -24.20125 -23.04594 -21.74679 -21.39711 -20.69737 -19.46642 -19.10233 -18.91862 -17.55287 -17.13097 -16.95075 -16.41501 -16.08980 -15.66230 -15.40140 -15.26425 -14.93945 -14.75827 -14.63189 -14.53490 -14.22952 -14.07621 -13.85622 -13.83118 -13.21014 -13.14110 -12.89767 -12.87216 -12.72556 -12.52750 -12.40621 -12.14959 -12.10416 -11.84483 -11.73672 -11.62065 -11.50327 -11.46636 -11.24370 -11.20861 -11.00909 -10.00157 -9.49899 -9.29216 -9.10757 -7.98906 -5.29177 -0.48100 0.48945 0.95846 1.32061 1.46852 1.49320 1.55108 1.79931 2.08356 2.53941 3.29095 3.43541 3.53737 3.63694 3.86844 3.93294 3.98181 4.04997 4.12083 4.13726 4.14115 4.26292 4.41496 4.43426 4.47526 4.54280 4.57165 4.66911 4.76361 4.81622 4.89160 4.90730 4.95229 4.99663 5.12544 5.13186 5.22592 5.26246 5.30314 5.30793 5.33418 5.40325 5.49958 5.54262 5.57962 6.22541 6.36067 6.92194 7.30355 8.00311 8.25469 9.23354 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.002328 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.789127 B =12023.108527 C =12601.106323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.065 0.935 12 C -0.121 4.121 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.592 3.408 16 O -0.587 6.587 17 C -0.299 4.299 18 C -0.053 4.053 19 C -0.131 4.131 20 C -0.199 4.199 21 S 0.250 5.750 22 C -0.046 4.046 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.051 4.051 27 C 0.094 3.906 28 H 0.253 0.747 29 H 0.380 0.620 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -32.230 0.379 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.360 5.360 10 C 0.057 3.943 11 H 0.083 0.917 12 C -0.160 4.160 13 C -0.030 4.030 14 N -0.342 5.342 15 C 0.383 3.617 16 O -0.470 6.470 17 C -0.419 4.419 18 C -0.088 4.088 19 C -0.142 4.142 20 C -0.318 4.318 21 S 0.522 5.478 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.091 4.091 27 C -0.032 4.032 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.066 -31.436 1.127 31.718 hybrid contribution 1.007 1.374 -1.825 2.496 sum 5.073 -30.063 -0.698 30.496 Atomic orbital electron populations 1.69780 1.06411 1.26342 1.58751 1.25521 0.96379 1.00947 1.03162 0.85273 0.77315 0.79400 0.78126 1.20968 1.21932 1.20085 1.19541 0.91404 0.85152 1.42047 0.90870 1.42390 1.05554 1.00276 1.87797 1.21445 0.95393 0.85831 0.91650 0.91678 1.22817 0.99314 0.91628 1.02199 1.22332 0.95651 0.97571 0.87403 1.48397 1.48034 1.08262 1.29530 1.17131 0.78140 0.85560 0.80876 1.90776 1.47747 1.74751 1.33764 1.24092 1.14089 0.95672 1.08001 1.20876 0.97030 0.92058 0.98793 1.19477 1.02665 0.94167 0.97913 1.25295 1.02908 1.02720 1.00875 1.83024 1.45594 0.93339 1.25877 1.20800 1.02088 0.87789 0.97783 1.21195 0.97855 0.99371 0.96610 1.20812 0.99976 0.98164 0.96644 1.21119 0.97665 0.97672 0.98659 1.20811 0.96800 0.92825 0.98636 1.23071 1.00058 0.78450 1.01662 0.93804 0.78713 0.87178 0.90113 0.89015 0.88724 0.84555 0.89288 0.88407 0.93058 0.89416 0.91101 0.91571 0.90460 0.93570 0.90822 0.89321 0.93449 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.81 13.06 21.65 0.28 -57.52 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -13.73 9.98 84.03 0.84 -12.89 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -35.22 5.28 -316.38 -1.67 -36.89 16 10 C 0.17 6.44 3.69 46.38 0.17 6.61 16 11 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 12 C -0.12 -3.36 6.57 31.79 0.21 -3.15 16 13 C 0.09 2.31 5.17 86.74 0.45 2.76 16 14 N -0.61 -20.65 3.33 -816.56 -2.72 -23.37 16 15 C 0.59 21.53 7.82 86.42 0.68 22.20 16 16 O -0.59 -26.30 17.09 -4.36 -0.07 -26.37 16 17 C -0.30 -8.37 6.37 23.99 0.15 -8.21 16 18 C -0.05 -1.34 9.78 21.86 0.21 -1.13 16 19 C -0.13 -2.47 5.06 -20.04 -0.10 -2.57 16 20 C -0.20 -3.25 5.46 25.31 0.14 -3.11 16 21 S 0.25 4.67 18.38 -56.49 -1.04 3.63 16 22 C -0.05 -0.45 5.87 30.51 0.18 -0.27 16 23 C -0.11 -1.00 5.60 30.00 0.17 -0.83 16 24 C -0.12 -1.00 5.14 29.30 0.15 -0.85 16 25 C -0.11 -1.30 5.56 29.91 0.17 -1.13 16 26 C -0.05 -0.69 5.81 30.61 0.18 -0.51 16 27 C 0.09 3.75 6.60 86.85 0.57 4.33 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.38 19.54 7.71 -92.71 -0.71 18.83 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.08 2.28 8.00 -2.39 -0.02 2.26 16 32 H 0.09 1.91 7.01 -2.39 -0.02 1.90 16 33 H 0.09 1.92 6.81 -2.39 -0.02 1.91 16 34 H 0.14 3.65 8.05 -2.91 -0.02 3.63 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 0.75 7.88 -2.39 -0.02 0.73 16 37 H 0.05 0.62 7.90 -2.39 -0.02 0.60 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.45 7.71 -2.39 -0.02 0.44 16 40 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 42 H 0.05 0.70 7.89 -2.39 -0.02 0.68 16 43 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 44 H 0.09 0.93 7.88 -2.39 -0.02 0.91 16 45 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 46 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -71.54 374.05 1.71 -69.83 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.27 Total: 24.63 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.63 Total: -2.09 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.10 Total: -117.79 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.37 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.04 Total: 3.63 kcal Total: -71.54 1.71 -69.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019735911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.944 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds