Wall clock time and date at job start Tue Mar 31 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47400 * 239.99988 * 3 2 1 5 5 H 1.48492 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46702 * 120.00423 * 3 2 1 7 7 C 1.38818 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99676 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85597 * 336.19422 * 10 9 7 12 12 C 1.54058 * 113.61715 * 107.50463 * 10 9 7 13 13 C 1.53784 * 86.98459 * 139.97996 * 12 10 9 14 14 H 1.09002 * 113.60974 * 219.97797 * 13 12 10 15 15 N 1.46499 * 113.62007 * 89.16024 * 13 12 10 16 16 C 1.34779 * 119.99955 * 105.86199 * 15 13 12 17 17 O 1.21285 * 120.00088 * 5.09262 * 16 15 13 18 18 C 1.50697 * 119.99817 * 185.09718 * 16 15 13 19 19 H 1.08998 * 109.39954 * 24.23908 * 18 16 15 20 20 C 1.53068 * 109.43721 * 144.12985 * 18 16 15 21 21 C 1.53400 * 108.33316 * 168.31180 * 20 18 16 22 22 O 1.42836 * 108.36960 * 295.28721 * 21 20 18 23 23 C 1.35895 * 117.85899 * 49.16025 * 22 21 20 24 24 C 1.39340 * 118.49996 * 162.82074 * 23 22 21 25 25 F 1.35102 * 119.91039 * 359.82905 * 24 23 22 26 26 C 1.38138 * 120.17735 * 179.80779 * 24 23 22 27 27 C 1.38294 * 119.93088 * 359.97438 * 26 24 23 28 28 C 1.38072 * 119.99761 * 0.07084 * 27 26 24 29 29 C 1.38281 * 121.81665 * 342.75173 * 23 22 21 30 30 C 1.53778 * 87.17370 * 334.56799 * 13 12 10 31 31 H 0.96996 * 119.99824 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00562 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61206 * 25.47262 * 12 10 9 34 34 H 1.09004 * 113.69325 * 254.49174 * 12 10 9 35 35 H 0.97000 * 119.99692 * 285.86537 * 15 13 12 36 36 H 1.09005 * 109.69705 * 48.58654 * 20 18 16 37 37 H 1.08995 * 109.70088 * 288.03730 * 20 18 16 38 38 H 1.09001 * 109.68771 * 55.00542 * 21 20 18 39 39 H 1.08998 * 109.68765 * 175.52861 * 21 20 18 40 40 H 1.07999 * 120.03224 * 179.97438 * 26 24 23 41 41 H 1.08004 * 120.00382 * 180.10816 * 27 26 24 42 42 H 1.08008 * 119.82192 * 180.02562 * 28 27 26 43 43 H 1.08994 * 113.61586 * 140.02408 * 30 13 12 44 44 H 1.09007 * 113.61820 * 270.93216 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 3.0655 -3.5636 -0.4081 12 6 1.9989 -4.4048 1.3428 13 6 1.8478 -5.6981 0.5246 14 1 1.1336 -6.4030 0.9501 15 7 3.1254 -6.3240 0.1749 16 6 3.5246 -7.4425 0.8122 17 8 2.7866 -7.9828 1.6087 18 6 4.8881 -8.0215 0.5352 19 1 5.5475 -7.2353 0.1678 20 6 5.4645 -8.6076 1.8265 21 6 6.7014 -9.4411 1.4680 22 8 6.2819 -10.5483 0.6690 23 6 5.4690 -10.2952 -0.3902 24 6 5.3424 -11.2690 -1.3788 25 9 6.0233 -12.4309 -1.2710 26 6 4.5223 -11.0497 -2.4685 27 6 3.8244 -9.8608 -2.5787 28 6 3.9489 -8.8940 -1.6009 29 6 4.7716 -9.1068 -0.5063 30 6 1.2600 -4.8284 -0.5992 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.1202 -4.1607 1.9398 34 1 2.9266 -4.3547 1.9129 35 1 3.6839 -5.9334 -0.5153 36 1 4.7197 -9.2428 2.3062 37 1 5.7484 -7.8004 2.5017 38 1 7.4064 -8.8288 0.9058 39 1 7.1761 -9.8044 2.3794 40 1 4.4262 -11.8059 -3.2335 41 1 3.1814 -9.6889 -3.4293 42 1 3.4022 -7.9668 -1.6896 43 1 1.5915 -5.1199 -1.5957 44 1 0.1796 -4.6998 -0.5321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020378948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:58 Heat of formation + Delta-G solvation = -60.762547 kcal Electronic energy + Delta-G solvation = -28322.592940 eV Core-core repulsion = 24155.469950 eV Total energy + Delta-G solvation = -4167.122990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.05104 -41.39170 -39.79714 -38.06359 -37.89821 -34.45065 -34.11481 -32.60272 -31.18936 -30.23042 -29.93278 -26.99956 -25.20848 -24.66294 -24.29003 -23.11793 -22.26804 -21.38911 -20.21918 -19.04358 -18.49545 -17.72289 -17.40272 -17.15299 -16.97994 -16.22431 -15.83829 -15.59353 -15.24959 -15.14442 -14.97073 -14.74295 -14.34938 -14.03963 -13.83512 -13.58445 -13.41672 -13.26661 -12.74844 -12.65421 -12.51354 -12.16145 -12.00827 -11.92477 -11.73643 -11.42555 -11.30015 -11.11376 -10.93901 -10.84219 -10.39270 -10.30589 -10.01709 -9.94938 -9.62790 -9.08876 -8.97964 -8.87159 -8.55667 -7.04153 -5.84955 -3.14355 0.69572 0.86486 2.43476 2.74663 2.95954 3.25432 3.38289 3.43064 3.44196 3.83183 4.06316 4.21226 4.32192 4.49979 4.52900 4.63641 4.69801 4.79969 4.86749 4.93463 4.97184 5.02243 5.12932 5.17989 5.37819 5.40480 5.43085 5.52997 5.67198 5.74478 5.79688 5.83344 5.85548 6.00598 6.06178 6.17929 6.24983 6.27991 6.41108 6.54389 6.61460 6.93084 6.99983 7.44275 7.61378 8.12043 8.33295 9.44529 10.01478 10.35663 11.37199 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.002287 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.664145 B =12239.540990 C =12596.694747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.096 0.904 15 N -0.705 5.705 16 C 0.527 3.473 17 O -0.531 6.531 18 C -0.064 4.064 19 H 0.108 0.892 20 C -0.149 4.149 21 C 0.063 3.937 22 O -0.308 6.308 23 C 0.111 3.889 24 C 0.069 3.931 25 F -0.132 7.132 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.091 4.091 29 C -0.124 4.124 30 C -0.159 4.159 31 H 0.257 0.743 32 H 0.386 0.614 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -21.745 -3.073 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.349 5.349 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.219 4.219 13 C 0.008 3.992 14 H 0.114 0.886 15 N -0.356 5.356 16 C 0.312 3.688 17 O -0.407 6.407 18 C -0.086 4.086 19 H 0.126 0.874 20 C -0.186 4.186 21 C -0.012 4.012 22 O -0.221 6.221 23 C 0.065 3.935 24 C 0.050 3.950 25 F -0.111 7.111 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.109 4.109 29 C -0.125 4.125 30 C -0.198 4.198 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.023 -22.138 -2.415 25.308 hybrid contribution 0.461 1.258 -0.230 1.359 sum 12.485 -20.880 -2.645 24.471 Atomic orbital electron populations 1.69643 1.05154 1.25976 1.57110 1.24775 0.95529 0.97829 1.02627 0.86264 0.78562 0.83459 0.77861 1.21205 1.21631 1.21216 1.19231 0.90999 0.84221 1.43414 0.91183 1.42391 1.05782 0.99834 1.86934 1.21663 0.95037 0.85203 0.92603 0.90862 1.24362 1.01990 0.95218 1.00280 1.21867 0.84832 0.94108 0.98363 0.88587 1.45820 1.22530 1.26961 1.40257 1.20065 0.87744 0.80223 0.80775 1.90709 1.54829 1.60043 1.35103 1.20217 0.96141 0.96685 0.95512 0.87447 1.22195 0.98584 1.01600 0.96263 1.23078 0.95631 0.87317 0.95125 1.86058 1.62371 1.35457 1.38244 1.18558 0.93563 0.93413 0.87973 1.17120 0.99016 0.83391 0.95508 1.91500 1.78092 1.45431 1.96064 1.21034 0.96698 0.99238 0.96890 1.20895 1.00189 0.92804 0.99832 1.21114 0.97006 1.00100 0.92683 1.19249 1.00839 0.94876 0.97549 1.23854 1.01702 0.97211 0.97074 0.93318 0.77986 0.89543 0.92445 0.76458 0.88496 0.88807 0.91243 0.86595 0.83925 0.84403 0.84834 0.91732 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -16.97 5.40 -52.49 -0.28 -17.26 16 10 C 0.17 3.02 4.37 -66.97 -0.29 2.72 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.18 -2.92 7.70 -25.77 -0.20 -3.12 16 13 C 0.11 1.58 4.33 -67.12 -0.29 1.29 16 14 H 0.10 1.45 7.45 -51.93 -0.39 1.06 16 15 N -0.71 -8.03 4.57 -53.02 -0.24 -8.27 16 16 C 0.53 6.49 5.79 -10.99 -0.06 6.42 16 17 O -0.53 -8.68 15.67 5.55 0.09 -8.59 16 18 C -0.06 -0.60 2.70 -92.81 -0.25 -0.85 16 19 H 0.11 0.74 8.13 -51.93 -0.42 0.32 16 20 C -0.15 -1.30 5.35 -26.49 -0.14 -1.44 16 21 C 0.06 0.47 7.03 37.36 0.26 0.73 16 22 O -0.31 -3.37 10.09 -19.41 -0.20 -3.57 16 23 C 0.11 1.24 6.48 -39.16 -0.25 0.99 16 24 C 0.07 0.76 7.30 -39.21 -0.29 0.47 16 25 F -0.13 -1.57 17.05 2.25 0.04 -1.53 16 26 C -0.12 -1.03 10.02 -39.60 -0.40 -1.43 16 27 C -0.12 -0.97 10.04 -39.62 -0.40 -1.37 16 28 C -0.09 -0.84 9.10 -39.52 -0.36 -1.20 16 29 C -0.12 -1.26 5.43 -104.40 -0.57 -1.83 16 30 C -0.16 -2.32 7.57 -25.92 -0.20 -2.52 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.39 9.83 7.92 -40.82 -0.32 9.51 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 3.63 8.66 -40.82 -0.35 3.27 16 36 H 0.10 1.07 7.47 -51.93 -0.39 0.68 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.13 1.13 6.78 -52.48 -0.36 0.78 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.41 8.12 -51.92 -0.42 0.99 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -33.00 369.12 -9.01 -42.02 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.00 Total: 9.91 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -3.68 Total: -8.29 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.20 Total: -52.24 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.11 Total: -12.16 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.00 -9.01 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020378948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.747 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds