Wall clock time and date at job start Tue Mar 31 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47400 * 239.99988 * 3 2 1 5 5 H 1.48492 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46702 * 120.00423 * 3 2 1 7 7 C 1.38818 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99676 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85597 * 336.19422 * 10 9 7 12 12 C 1.54058 * 113.61715 * 107.50463 * 10 9 7 13 13 C 1.53784 * 86.98459 * 139.97996 * 12 10 9 14 14 H 1.09002 * 113.60974 * 219.97797 * 13 12 10 15 15 N 1.46499 * 113.62007 * 89.16024 * 13 12 10 16 16 C 1.34779 * 119.99955 * 105.86199 * 15 13 12 17 17 O 1.21285 * 120.00088 * 5.09262 * 16 15 13 18 18 C 1.50697 * 119.99817 * 185.09718 * 16 15 13 19 19 H 1.08998 * 109.39954 * 24.23908 * 18 16 15 20 20 C 1.53068 * 109.43721 * 144.12985 * 18 16 15 21 21 C 1.53400 * 108.33316 * 168.31180 * 20 18 16 22 22 O 1.42836 * 108.36960 * 295.28721 * 21 20 18 23 23 C 1.35895 * 117.85899 * 49.16025 * 22 21 20 24 24 C 1.39340 * 118.49996 * 162.82074 * 23 22 21 25 25 F 1.35102 * 119.91039 * 359.82905 * 24 23 22 26 26 C 1.38138 * 120.17735 * 179.80779 * 24 23 22 27 27 C 1.38294 * 119.93088 * 359.97438 * 26 24 23 28 28 C 1.38072 * 119.99761 * 0.07084 * 27 26 24 29 29 C 1.38281 * 121.81665 * 342.75173 * 23 22 21 30 30 C 1.53778 * 87.17370 * 334.56799 * 13 12 10 31 31 H 0.96996 * 119.99824 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00562 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61206 * 25.47262 * 12 10 9 34 34 H 1.09004 * 113.69325 * 254.49174 * 12 10 9 35 35 H 0.97000 * 119.99692 * 285.86537 * 15 13 12 36 36 H 1.09005 * 109.69705 * 48.58654 * 20 18 16 37 37 H 1.08995 * 109.70088 * 288.03730 * 20 18 16 38 38 H 1.09001 * 109.68771 * 55.00542 * 21 20 18 39 39 H 1.08998 * 109.68765 * 175.52861 * 21 20 18 40 40 H 1.07999 * 120.03224 * 179.97438 * 26 24 23 41 41 H 1.08004 * 120.00382 * 180.10816 * 27 26 24 42 42 H 1.08008 * 119.82192 * 180.02562 * 28 27 26 43 43 H 1.08994 * 113.61586 * 140.02408 * 30 13 12 44 44 H 1.09007 * 113.61820 * 270.93216 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 3.0655 -3.5636 -0.4081 12 6 1.9989 -4.4048 1.3428 13 6 1.8478 -5.6981 0.5246 14 1 1.1336 -6.4030 0.9501 15 7 3.1254 -6.3240 0.1749 16 6 3.5246 -7.4425 0.8122 17 8 2.7866 -7.9828 1.6087 18 6 4.8881 -8.0215 0.5352 19 1 5.5475 -7.2353 0.1678 20 6 5.4645 -8.6076 1.8265 21 6 6.7014 -9.4411 1.4680 22 8 6.2819 -10.5483 0.6690 23 6 5.4690 -10.2952 -0.3902 24 6 5.3424 -11.2690 -1.3788 25 9 6.0233 -12.4309 -1.2710 26 6 4.5223 -11.0497 -2.4685 27 6 3.8244 -9.8608 -2.5787 28 6 3.9489 -8.8940 -1.6009 29 6 4.7716 -9.1068 -0.5063 30 6 1.2600 -4.8284 -0.5992 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.1202 -4.1607 1.9398 34 1 2.9266 -4.3547 1.9129 35 1 3.6839 -5.9334 -0.5153 36 1 4.7197 -9.2428 2.3062 37 1 5.7484 -7.8004 2.5017 38 1 7.4064 -8.8288 0.9058 39 1 7.1761 -9.8044 2.3794 40 1 4.4262 -11.8059 -3.2335 41 1 3.1814 -9.6889 -3.4293 42 1 3.4022 -7.9668 -1.6896 43 1 1.5915 -5.1199 -1.5957 44 1 0.1796 -4.6998 -0.5321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020378948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:57 Heat of formation + Delta-G solvation = -82.065897 kcal Electronic energy + Delta-G solvation = -28323.516722 eV Core-core repulsion = 24155.469950 eV Total energy + Delta-G solvation = -4168.046772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86694 -42.18371 -40.84872 -39.29105 -38.58136 -35.77256 -35.26381 -34.00200 -31.93807 -31.67268 -30.92609 -27.82571 -26.54850 -26.26739 -25.05712 -24.15022 -23.50758 -22.32126 -21.00453 -20.37409 -19.30766 -19.09000 -18.42973 -18.20437 -17.80365 -17.17742 -16.87165 -16.66602 -16.40764 -15.96884 -15.82468 -15.78947 -15.55975 -15.41281 -15.12626 -14.63696 -14.32895 -14.17527 -13.95344 -13.54227 -13.45543 -13.31136 -13.29919 -13.13845 -12.76889 -12.73224 -12.59054 -12.20590 -12.13936 -11.95490 -11.82767 -11.77482 -11.72046 -11.19394 -10.99388 -10.81709 -10.05587 -9.80747 -9.27716 -8.97182 -7.93396 -5.21621 -0.00920 0.15956 1.46255 1.49172 1.51396 1.57418 1.98508 2.16268 2.51257 2.57897 3.09493 3.34165 3.38246 3.52817 3.63030 3.71845 3.78893 3.86932 3.96595 3.99605 4.05814 4.14498 4.26502 4.34010 4.35446 4.35788 4.40705 4.57768 4.74189 4.77998 4.85255 4.93560 4.94388 4.99213 5.05402 5.15409 5.18023 5.22274 5.26375 5.33241 5.52225 5.64094 5.70945 6.24237 6.28605 6.50268 7.17120 7.34960 8.12384 8.33832 9.29707 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.002287 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.664145 B =12239.540990 C =12596.694747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.728 5.728 10 C 0.153 3.847 11 H 0.086 0.914 12 C -0.174 4.174 13 C 0.134 3.866 14 H 0.087 0.913 15 N -0.693 5.693 16 C 0.530 3.470 17 O -0.574 6.574 18 C -0.059 4.059 19 H 0.139 0.861 20 C -0.147 4.147 21 C 0.061 3.939 22 O -0.329 6.329 23 C 0.095 3.905 24 C 0.043 3.957 25 F -0.144 7.144 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.097 4.097 29 C -0.134 4.134 30 C -0.142 4.142 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.416 0.584 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.143 0.857 43 H 0.091 0.909 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 -22.055 -4.317 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.365 5.365 10 C 0.044 3.956 11 H 0.104 0.896 12 C -0.216 4.216 13 C 0.028 3.972 14 H 0.105 0.895 15 N -0.344 5.344 16 C 0.317 3.683 17 O -0.453 6.453 18 C -0.080 4.080 19 H 0.157 0.843 20 C -0.185 4.185 21 C -0.013 4.013 22 O -0.244 6.244 23 C 0.049 3.951 24 C 0.023 3.977 25 F -0.123 7.123 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.116 4.116 29 C -0.135 4.135 30 C -0.181 4.181 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.183 0.817 41 H 0.183 0.817 42 H 0.161 0.839 43 H 0.109 0.891 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.858 -22.485 -3.679 26.667 hybrid contribution -0.067 1.255 0.178 1.269 sum 13.790 -21.230 -3.502 25.557 Atomic orbital electron populations 1.69803 1.06652 1.26080 1.59562 1.25564 0.96324 1.01150 1.03900 0.85252 0.77198 0.79354 0.78208 1.20098 1.22588 1.20607 1.19672 0.91604 0.85306 1.40877 0.90235 1.42605 1.05444 1.01115 1.87315 1.22036 0.95740 0.83884 0.93980 0.89570 1.24206 1.01220 0.96622 0.99514 1.21496 0.85790 0.92850 0.97090 0.89453 1.45679 1.21720 1.26623 1.40393 1.20555 0.88368 0.79715 0.79687 1.90700 1.56298 1.61276 1.37012 1.20263 0.94600 0.97264 0.95850 0.84339 1.22179 0.98403 1.01799 0.96132 1.23330 0.95267 0.86812 0.95854 1.86025 1.62554 1.37212 1.38570 1.18764 0.94218 0.93878 0.88231 1.17510 1.00181 0.83314 0.96710 1.91460 1.78544 1.46088 1.96237 1.21350 0.95528 0.99954 0.96485 1.21244 0.99840 0.92065 1.00241 1.21348 0.96742 1.00811 0.92650 1.19354 1.01282 0.94813 0.98094 1.23664 1.00898 0.95058 0.98519 0.94109 0.79459 0.91473 0.92356 0.74623 0.91391 0.87148 0.89232 0.84629 0.81670 0.81658 0.83910 0.89095 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 44.66 29.55 68.60 2.03 46.68 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -12.80 9.97 84.04 0.84 -11.97 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.45 5.40 -319.99 -1.73 -36.18 16 10 C 0.15 5.29 4.37 45.61 0.20 5.49 16 11 H 0.09 2.75 8.10 -2.39 -0.02 2.73 16 12 C -0.17 -5.59 7.70 31.22 0.24 -5.35 16 13 C 0.13 3.50 4.33 45.52 0.20 3.70 16 14 H 0.09 2.54 7.45 -2.39 -0.02 2.52 16 15 N -0.69 -13.95 4.57 -440.03 -2.01 -15.96 16 16 C 0.53 12.10 5.79 87.66 0.51 12.60 16 17 O -0.57 -18.45 15.67 -3.05 -0.05 -18.50 16 18 C -0.06 -0.98 2.70 -12.21 -0.03 -1.01 16 19 H 0.14 1.41 8.13 -2.39 -0.02 1.39 16 20 C -0.15 -2.37 5.35 30.75 0.16 -2.20 16 21 C 0.06 0.81 7.03 72.12 0.51 1.32 16 22 O -0.33 -7.04 10.09 -92.37 -0.93 -7.97 16 23 C 0.10 2.05 6.48 22.55 0.15 2.20 16 24 C 0.04 0.90 7.30 22.51 0.16 1.06 16 25 F -0.14 -3.42 17.05 44.97 0.77 -2.66 16 26 C -0.11 -1.76 10.02 22.26 0.22 -1.53 16 27 C -0.12 -1.57 10.04 22.24 0.22 -1.35 16 28 C -0.10 -1.57 9.10 22.31 0.20 -1.36 16 29 C -0.13 -2.51 5.43 -19.72 -0.11 -2.62 16 30 C -0.14 -3.86 7.57 31.12 0.24 -3.62 16 31 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.37 19.28 7.92 -92.71 -0.73 18.55 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.42 5.99 8.66 -92.71 -0.80 5.19 16 36 H 0.07 1.51 7.47 -2.38 -0.02 1.49 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.14 1.96 6.78 -2.91 -0.02 1.94 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 2.49 8.12 -2.38 -0.02 2.47 16 Total: -1.00 -72.86 369.12 2.05 -70.81 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.49 Total: 30.09 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 4.18 Total: -8.47 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.46 Total: -109.99 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.98 Total: -26.47 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.77 Total: -2.66 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.86 2.05 -70.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020378948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.257 kcal (2) G-P(sol) polarization free energy of solvation -72.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds