Wall clock time and date at job start Tue Mar 31 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.84586 * 25.33861 * 10 9 7 12 12 C 1.53780 * 113.60914 * 156.52938 * 10 9 7 13 13 C 1.53787 * 87.07679 * 139.98436 * 12 10 9 14 14 H 1.09001 * 113.61391 * 220.01496 * 13 12 10 15 15 N 1.46501 * 113.61238 * 89.20301 * 13 12 10 16 16 C 1.34774 * 119.99848 * 154.99620 * 15 13 12 17 17 O 1.21281 * 120.00440 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99841 * 179.97438 * 16 15 13 19 19 H 1.09005 * 109.67460 * 55.00665 * 18 16 15 20 20 C 1.53399 * 109.68525 * 294.49432 * 18 16 15 21 21 C 1.53065 * 108.29717 * 175.60611 * 20 18 16 22 22 C 1.50780 * 109.69681 * 48.21299 * 21 20 18 23 23 C 1.38527 * 118.72756 * 162.32053 * 22 21 20 24 24 C 1.38065 * 120.34477 * 179.61160 * 23 22 21 25 25 C 1.38517 * 119.95524 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.04431 * 180.11261 * 25 24 23 27 27 C 1.38181 * 119.90665 * 0.09137 * 25 24 23 28 28 C 1.38391 * 121.39457 * 342.09692 * 22 21 20 29 29 O 1.35848 * 121.80336 * 0.54435 * 28 22 21 30 30 C 1.53771 * 113.61805 * 254.13994 * 10 9 7 31 31 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.61542 * 254.53112 * 12 10 9 34 34 H 1.09000 * 113.61720 * 25.43957 * 12 10 9 35 35 H 0.96995 * 120.00305 * 334.99531 * 15 13 12 36 36 H 1.09001 * 109.70102 * 295.26827 * 20 18 16 37 37 H 1.08996 * 109.70142 * 55.86933 * 20 18 16 38 38 H 1.08997 * 109.40527 * 288.15420 * 21 20 18 39 39 H 1.09003 * 109.41074 * 168.27044 * 21 20 18 40 40 H 1.07992 * 119.82713 * 359.62923 * 23 22 21 41 41 H 1.08001 * 120.02207 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.90294 * 179.97438 * 27 25 24 43 43 H 1.09009 * 113.61494 * 334.56734 * 30 10 9 44 44 H 1.09000 * 113.62024 * 105.47315 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 3.0540 -3.5685 0.4450 12 6 1.2443 -4.8352 0.5723 13 6 1.8624 -5.6916 -0.5455 14 1 1.1596 -6.3903 -0.9995 15 7 3.1292 -6.3234 -0.1683 16 6 3.5300 -7.4516 -0.7871 17 8 2.8423 -7.9436 -1.6565 18 6 4.8334 -8.1012 -0.3995 19 1 4.8414 -8.2967 0.6728 20 6 6.0008 -7.1753 -0.7644 21 6 7.2968 -7.8140 -0.2591 22 6 7.3452 -9.2626 -0.6747 23 6 8.5635 -9.9216 -0.6517 24 6 8.6448 -11.2503 -1.0178 25 6 7.5038 -11.9307 -1.4102 26 9 7.5810 -13.2316 -1.7667 27 6 6.2866 -11.2772 -1.4361 28 6 6.2036 -9.9377 -1.0700 29 8 4.9903 -9.3283 -1.1132 30 6 2.0375 -4.3860 -1.3422 31 1 -0.4851 -0.8400 -0.0004 32 1 0.3554 -2.3880 0.0015 33 1 1.5488 -5.1387 1.5739 34 1 0.1661 -4.7058 0.4776 35 1 3.6794 -5.9298 0.5267 36 1 6.0493 -7.0542 -1.8466 37 1 5.8608 -6.2034 -0.2913 38 1 7.3335 -7.7472 0.8282 39 1 8.1505 -7.2861 -0.6840 40 1 9.4542 -9.3933 -0.3454 41 1 9.5972 -11.7591 -0.9975 42 1 5.3971 -11.8076 -1.7424 43 1 1.1766 -4.1334 -1.9613 44 1 2.9815 -4.3273 -1.8840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020394896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:47 Heat of formation + Delta-G solvation = -61.227865 kcal Electronic energy + Delta-G solvation = -27719.047616 eV Core-core repulsion = 23551.904448 eV Total energy + Delta-G solvation = -4167.143168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.28088 -41.39841 -39.95823 -38.32676 -37.36100 -34.91766 -34.31931 -32.89455 -31.05771 -30.70342 -29.60861 -26.87090 -25.30171 -24.33589 -24.24236 -23.22610 -22.60273 -21.54167 -20.42140 -19.21690 -18.70626 -17.98135 -17.38566 -17.23855 -16.34529 -16.27193 -15.96452 -15.86265 -15.28273 -15.23863 -15.01994 -14.71252 -14.40703 -14.06595 -14.04126 -13.65098 -13.57122 -13.45127 -13.36641 -13.13096 -12.38555 -12.24570 -12.06278 -11.86655 -11.64250 -11.60205 -11.52854 -11.06038 -10.88339 -10.60739 -10.40742 -10.19142 -10.01683 -9.88799 -9.23801 -9.20346 -9.03833 -8.91596 -8.64939 -7.12011 -6.18353 -3.19126 0.65561 0.82379 2.19576 2.35668 3.06177 3.28107 3.46472 3.51081 3.65057 3.95096 4.02836 4.16346 4.18589 4.33177 4.48122 4.56192 4.61018 4.68862 4.74791 4.85584 4.97970 5.01056 5.04377 5.25841 5.28745 5.32152 5.41664 5.50245 5.58513 5.62891 5.70638 5.73803 5.74191 5.90756 5.91716 6.06055 6.14269 6.24881 6.31945 6.45397 6.50749 6.86734 6.92855 7.34756 7.72388 8.02978 8.67275 9.13250 9.99641 10.14156 11.29673 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.002021 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.713568 B =13847.878854 C =14716.174204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.074 0.926 12 C -0.160 4.160 13 C 0.118 3.882 14 H 0.098 0.902 15 N -0.700 5.700 16 C 0.522 3.478 17 O -0.516 6.516 18 C 0.076 3.924 19 H 0.102 0.898 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.173 4.173 23 C -0.054 4.054 24 C -0.186 4.186 25 C 0.132 3.868 26 F -0.135 7.135 27 C -0.184 4.184 28 C 0.166 3.834 29 O -0.284 6.284 30 C -0.176 4.176 31 H 0.256 0.744 32 H 0.369 0.631 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.086 0.914 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 -21.584 1.918 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.469 4.469 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.092 0.908 12 C -0.199 4.199 13 C 0.013 3.987 14 H 0.116 0.884 15 N -0.352 5.352 16 C 0.306 3.694 17 O -0.391 6.391 18 C 0.016 3.984 19 H 0.119 0.881 20 C -0.190 4.190 21 C -0.112 4.112 22 C -0.174 4.174 23 C -0.072 4.072 24 C -0.205 4.205 25 C 0.112 3.888 26 F -0.113 7.113 27 C -0.203 4.203 28 C 0.120 3.880 29 O -0.196 6.196 30 C -0.218 4.218 31 H 0.067 0.933 32 H 0.203 0.797 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.104 0.896 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.148 -20.324 1.191 26.619 hybrid contribution 0.314 -1.702 0.261 1.750 sum 17.462 -22.026 1.452 28.146 Atomic orbital electron populations 1.70855 1.06071 1.28537 1.53154 1.25813 0.97054 1.01141 1.00182 0.83196 0.73863 0.75298 0.76296 1.22248 1.21334 1.22133 1.20096 0.92040 0.85841 1.48890 0.91666 1.42410 1.04814 1.00840 1.88261 1.21558 0.94942 0.84722 0.92752 0.90788 1.23861 1.01434 0.97265 0.97373 1.21883 0.84686 0.94060 0.98102 0.88371 1.45526 1.23534 1.25727 1.40455 1.19804 0.86231 0.80961 0.82407 1.90755 1.55090 1.62887 1.30338 1.22304 0.94669 0.84441 0.96990 0.88075 1.22256 0.93343 0.99268 1.04111 1.20501 0.98316 0.90619 1.01744 1.19925 0.92917 0.97191 1.07334 1.20740 0.96855 0.93288 0.96301 1.21022 0.97963 0.95697 1.05809 1.17228 0.93824 0.78616 0.99106 1.91523 1.97008 1.33474 1.89327 1.20434 0.98257 0.92933 1.08688 1.18314 0.84114 0.90545 0.95046 1.86077 1.28835 1.36067 1.68622 1.24339 1.02087 0.94960 1.00399 0.93290 0.79730 0.91530 0.89034 0.76386 0.89354 0.88446 0.89655 0.89026 0.84511 0.84473 0.83709 0.89590 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.26 29.92 -169.99 -5.09 20.17 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.34 -9.14 9.97 -15.06 -0.15 -9.29 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.72 -17.25 5.41 -52.64 -0.28 -17.53 16 10 C 0.17 3.13 4.35 -67.12 -0.29 2.84 16 11 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 12 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 13 C 0.12 1.66 4.33 -67.03 -0.29 1.37 16 14 H 0.10 1.49 7.46 -51.93 -0.39 1.10 16 15 N -0.70 -8.04 5.21 -52.93 -0.28 -8.31 16 16 C 0.52 6.72 7.19 -10.99 -0.08 6.65 16 17 O -0.52 -9.05 16.12 -14.21 -0.23 -9.28 16 18 C 0.08 0.74 3.21 -27.68 -0.09 0.65 16 19 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -1.14 5.46 -26.49 -0.14 -1.29 16 21 C -0.07 -0.44 5.86 -27.81 -0.16 -0.61 16 22 C -0.17 -1.39 5.75 -104.42 -0.60 -1.99 16 23 C -0.05 -0.36 9.66 -39.54 -0.38 -0.74 16 24 C -0.19 -1.37 10.03 -39.54 -0.40 -1.77 16 25 C 0.13 1.22 7.30 -39.50 -0.29 0.93 16 26 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 27 C -0.18 -1.86 9.91 -39.28 -0.39 -2.25 16 28 C 0.17 1.72 6.47 -39.20 -0.25 1.47 16 29 O -0.28 -3.46 9.46 -39.03 -0.37 -3.83 16 30 C -0.18 -2.94 7.69 -25.84 -0.20 -3.14 16 31 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 32 H 0.37 9.11 6.74 -40.82 -0.28 8.83 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 35 H 0.40 3.50 8.50 -40.82 -0.35 3.15 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.57 7.91 -51.93 -0.41 0.16 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -34.23 371.25 -9.83 -44.07 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.97 Total: 9.18 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.01 Total: -11.04 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.20 Total: -53.58 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.60 Total: -13.11 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.23 -9.83 -44.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020394896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.160 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds