Wall clock time and date at job start Tue Mar 31 2020 18:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.84586 * 25.33861 * 10 9 7 12 12 C 1.53780 * 113.60914 * 156.52938 * 10 9 7 13 13 C 1.53787 * 87.07679 * 139.98436 * 12 10 9 14 14 H 1.09001 * 113.61391 * 220.01496 * 13 12 10 15 15 N 1.46501 * 113.61238 * 89.20301 * 13 12 10 16 16 C 1.34774 * 119.99848 * 154.99620 * 15 13 12 17 17 O 1.21281 * 120.00440 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99841 * 179.97438 * 16 15 13 19 19 H 1.09005 * 109.67460 * 55.00665 * 18 16 15 20 20 C 1.53399 * 109.68525 * 294.49432 * 18 16 15 21 21 C 1.53065 * 108.29717 * 175.60611 * 20 18 16 22 22 C 1.50780 * 109.69681 * 48.21299 * 21 20 18 23 23 C 1.38527 * 118.72756 * 162.32053 * 22 21 20 24 24 C 1.38065 * 120.34477 * 179.61160 * 23 22 21 25 25 C 1.38517 * 119.95524 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.04431 * 180.11261 * 25 24 23 27 27 C 1.38181 * 119.90665 * 0.09137 * 25 24 23 28 28 C 1.38391 * 121.39457 * 342.09692 * 22 21 20 29 29 O 1.35848 * 121.80336 * 0.54435 * 28 22 21 30 30 C 1.53771 * 113.61805 * 254.13994 * 10 9 7 31 31 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.61542 * 254.53112 * 12 10 9 34 34 H 1.09000 * 113.61720 * 25.43957 * 12 10 9 35 35 H 0.96995 * 120.00305 * 334.99531 * 15 13 12 36 36 H 1.09001 * 109.70102 * 295.26827 * 20 18 16 37 37 H 1.08996 * 109.70142 * 55.86933 * 20 18 16 38 38 H 1.08997 * 109.40527 * 288.15420 * 21 20 18 39 39 H 1.09003 * 109.41074 * 168.27044 * 21 20 18 40 40 H 1.07992 * 119.82713 * 359.62923 * 23 22 21 41 41 H 1.08001 * 120.02207 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.90294 * 179.97438 * 27 25 24 43 43 H 1.09009 * 113.61494 * 334.56734 * 30 10 9 44 44 H 1.09000 * 113.62024 * 105.47315 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 3.0540 -3.5685 0.4450 12 6 1.2443 -4.8352 0.5723 13 6 1.8624 -5.6916 -0.5455 14 1 1.1596 -6.3903 -0.9995 15 7 3.1292 -6.3234 -0.1683 16 6 3.5300 -7.4516 -0.7871 17 8 2.8423 -7.9436 -1.6565 18 6 4.8334 -8.1012 -0.3995 19 1 4.8414 -8.2967 0.6728 20 6 6.0008 -7.1753 -0.7644 21 6 7.2968 -7.8140 -0.2591 22 6 7.3452 -9.2626 -0.6747 23 6 8.5635 -9.9216 -0.6517 24 6 8.6448 -11.2503 -1.0178 25 6 7.5038 -11.9307 -1.4102 26 9 7.5810 -13.2316 -1.7667 27 6 6.2866 -11.2772 -1.4361 28 6 6.2036 -9.9377 -1.0700 29 8 4.9903 -9.3283 -1.1132 30 6 2.0375 -4.3860 -1.3422 31 1 -0.4851 -0.8400 -0.0004 32 1 0.3554 -2.3880 0.0015 33 1 1.5488 -5.1387 1.5739 34 1 0.1661 -4.7058 0.4776 35 1 3.6794 -5.9298 0.5267 36 1 6.0493 -7.0542 -1.8466 37 1 5.8608 -6.2034 -0.2913 38 1 7.3335 -7.7472 0.8282 39 1 8.1505 -7.2861 -0.6840 40 1 9.4542 -9.3933 -0.3454 41 1 9.5972 -11.7591 -0.9975 42 1 5.3971 -11.8076 -1.7424 43 1 1.1766 -4.1334 -1.9613 44 1 2.9815 -4.3273 -1.8840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020394896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:46 Heat of formation + Delta-G solvation = -82.796894 kcal Electronic energy + Delta-G solvation = -27719.982919 eV Core-core repulsion = 23551.904448 eV Total energy + Delta-G solvation = -4168.078471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.99293 -42.16191 -41.03012 -39.47912 -38.19739 -36.14473 -35.49759 -34.19611 -31.96470 -31.48476 -31.10177 -27.64134 -26.64315 -26.03443 -24.93614 -24.16041 -23.83680 -22.51718 -21.13004 -20.50629 -19.50190 -19.44515 -18.73290 -17.99681 -17.20163 -17.09750 -16.93314 -16.72162 -16.66563 -16.05534 -16.00422 -15.69699 -15.67543 -15.35312 -15.12823 -14.66562 -14.58241 -14.31401 -14.12702 -13.95109 -13.68001 -13.43450 -13.27048 -12.95428 -12.66772 -12.43008 -12.40699 -12.25751 -12.08688 -11.89069 -11.83576 -11.69717 -11.62316 -11.09696 -10.92307 -10.84557 -10.18179 -9.83357 -9.28713 -9.09058 -8.37012 -5.31614 0.03258 0.19885 1.33971 1.37596 1.60355 1.70589 1.84260 2.36129 2.51947 2.73466 3.31231 3.38748 3.40280 3.42753 3.59171 3.61848 3.71394 3.75205 3.80387 3.84370 3.98413 4.09088 4.18064 4.19812 4.22982 4.41424 4.47989 4.61731 4.77233 4.81069 4.81786 4.91555 4.97169 5.02948 5.04288 5.08601 5.09603 5.14224 5.15932 5.34355 5.55326 5.63635 5.66551 6.19329 6.42161 6.51111 7.05878 7.10647 8.00905 8.13064 9.14686 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.002021 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.713568 B =13847.878854 C =14716.174204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.109 4.109 3 Si 1.129 2.871 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.330 4.330 8 H 0.072 0.928 9 N -0.740 5.740 10 C 0.159 3.841 11 H 0.087 0.913 12 C -0.142 4.142 13 C 0.136 3.864 14 H 0.088 0.912 15 N -0.685 5.685 16 C 0.521 3.479 17 O -0.571 6.571 18 C 0.077 3.923 19 H 0.132 0.868 20 C -0.149 4.149 21 C -0.071 4.071 22 C -0.170 4.170 23 C -0.046 4.046 24 C -0.180 4.180 25 C 0.114 3.886 26 F -0.144 7.144 27 C -0.204 4.204 28 C 0.142 3.858 29 O -0.317 6.317 30 C -0.173 4.173 31 H 0.244 0.756 32 H 0.360 0.640 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.419 0.581 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.132 0.868 43 H 0.066 0.934 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.345 -21.418 3.631 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.461 4.461 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.049 3.951 11 H 0.105 0.895 12 C -0.181 4.181 13 C 0.029 3.971 14 H 0.106 0.894 15 N -0.338 5.338 16 C 0.308 3.692 17 O -0.449 6.449 18 C 0.018 3.982 19 H 0.150 0.850 20 C -0.186 4.186 21 C -0.107 4.107 22 C -0.171 4.171 23 C -0.064 4.064 24 C -0.199 4.199 25 C 0.094 3.906 26 F -0.123 7.123 27 C -0.224 4.224 28 C 0.096 3.904 29 O -0.231 6.231 30 C -0.215 4.215 31 H 0.055 0.945 32 H 0.192 0.808 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.192 0.808 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.780 -20.208 2.933 29.133 hybrid contribution -0.752 -1.865 -0.310 2.035 sum 20.029 -22.073 2.623 29.920 Atomic orbital electron populations 1.70965 1.07306 1.27955 1.56420 1.27188 0.97134 1.04839 1.00819 0.82607 0.73754 0.71609 0.76652 1.21601 1.22316 1.19255 1.20473 0.92530 0.86978 1.46158 0.90987 1.42641 1.04662 1.01987 1.88680 1.21928 0.95700 0.83468 0.93968 0.89474 1.23671 1.00713 0.94989 0.98746 1.21533 0.85687 0.92810 0.97031 0.89364 1.45337 1.22711 1.25250 1.40499 1.20464 0.86892 0.80607 0.81278 1.90735 1.56950 1.64380 1.32794 1.22429 0.93311 0.84213 0.98205 0.85025 1.22290 0.93301 0.99877 1.03171 1.20620 0.97840 0.88858 1.03393 1.20268 0.92410 0.98386 1.06064 1.21165 0.97514 0.92885 0.94837 1.21368 0.98010 0.96170 1.04308 1.17443 0.94364 0.78491 1.00258 1.91494 1.97055 1.34121 1.89600 1.20497 0.98479 0.93573 1.09853 1.18504 0.84410 0.90698 0.96744 1.86013 1.30269 1.37154 1.69639 1.24188 1.01281 0.96439 0.99627 0.94526 0.80783 0.88926 0.89604 0.74253 0.91401 0.86230 0.87000 0.86867 0.80790 0.82171 0.85040 0.91536 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.28 13.70 21.65 0.30 -59.98 16 2 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 3 Si 1.13 50.39 29.92 68.60 2.05 52.45 16 4 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.33 -17.64 9.97 84.04 0.84 -16.80 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.74 -35.15 5.41 -320.45 -1.73 -36.88 16 10 C 0.16 5.55 4.35 45.51 0.20 5.75 16 11 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 12 C -0.14 -3.91 7.58 31.12 0.24 -3.68 16 13 C 0.14 3.67 4.33 45.58 0.20 3.87 16 14 H 0.09 2.66 7.46 -2.39 -0.02 2.65 16 15 N -0.69 -14.29 5.21 -439.76 -2.29 -16.58 16 16 C 0.52 12.95 7.19 87.66 0.63 13.58 16 17 O -0.57 -20.43 16.12 15.86 0.26 -20.17 16 18 C 0.08 1.37 3.21 29.98 0.10 1.47 16 19 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 20 C -0.15 -1.79 5.46 30.75 0.17 -1.63 16 21 C -0.07 -0.53 5.86 29.89 0.18 -0.35 16 22 C -0.17 -2.26 5.75 -19.73 -0.11 -2.37 16 23 C -0.05 -0.44 9.66 22.30 0.22 -0.23 16 24 C -0.18 -2.21 10.03 22.30 0.22 -1.99 16 25 C 0.11 2.08 7.30 22.32 0.16 2.24 16 26 F -0.14 -2.89 17.27 44.97 0.78 -2.11 16 27 C -0.20 -4.32 9.91 22.46 0.22 -4.10 16 28 C 0.14 2.87 6.47 22.51 0.15 3.02 16 29 O -0.32 -7.78 9.46 -72.94 -0.69 -8.47 16 30 C -0.17 -5.72 7.69 31.17 0.24 -5.48 16 31 H 0.24 14.97 6.77 -92.71 -0.63 14.34 16 32 H 0.36 18.14 6.74 -92.71 -0.62 17.51 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.53 8.11 -2.39 -0.02 2.51 16 35 H 0.42 5.81 8.50 -92.71 -0.79 5.02 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 0.89 7.91 -2.39 -0.02 0.87 16 38 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -77.73 371.25 2.54 -75.19 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.22 Total: 28.95 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.10 Total: -12.38 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.73 Total: -113.45 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.43 Total: -28.64 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.45 kcal Total: -77.73 2.54 -75.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020394896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.610 kcal (2) G-P(sol) polarization free energy of solvation -77.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds