Wall clock time and date at job start Tue Mar 31 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47083 * 270.00228 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00318 * 3 2 1 6 6 H 1.48505 * 109.47389 * 150.00345 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46496 * 113.68971 * 89.19569 * 13 12 10 16 16 C 1.34784 * 119.99758 * 107.45966 * 15 13 12 17 17 O 1.21285 * 119.99985 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99866 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.68162 * 305.00198 * 18 16 15 20 20 C 1.53405 * 109.68206 * 65.52662 * 18 16 15 21 21 C 1.53058 * 108.30318 * 184.39500 * 20 18 16 22 22 C 1.50776 * 109.71253 * 311.84215 * 21 20 18 23 23 C 1.38524 * 118.73578 * 197.56942 * 22 21 20 24 24 C 1.38057 * 120.35633 * 180.42678 * 23 22 21 25 25 C 1.38522 * 119.95191 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.05038 * 179.89649 * 25 24 23 27 27 C 1.38189 * 119.90327 * 359.91794 * 25 24 23 28 28 C 1.38389 * 121.39358 * 17.83288 * 22 21 20 29 29 O 1.35849 * 121.80312 * 359.45993 * 28 22 21 30 30 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 31 31 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 34 34 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 35 35 H 0.97001 * 120.00688 * 287.46664 * 15 13 12 36 36 H 1.09000 * 109.70081 * 304.13595 * 20 18 16 37 37 H 1.09003 * 109.69919 * 64.74365 * 20 18 16 38 38 H 1.09000 * 109.44182 * 191.75188 * 21 20 18 39 39 H 1.08998 * 109.36432 * 71.88013 * 21 20 18 40 40 H 1.08009 * 119.82513 * 0.41660 * 23 22 21 41 41 H 1.07999 * 120.03107 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.89804 * 180.02562 * 27 25 24 43 43 H 1.09002 * 113.61445 * 139.98212 * 30 13 12 44 44 H 1.09002 * 113.61408 * 270.79943 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1305 -6.4023 0.9530 15 7 3.1217 -6.3290 0.1757 16 6 3.5042 -7.4654 0.7915 17 8 2.7921 -7.9669 1.6355 18 6 4.8159 -8.1133 0.4303 19 1 4.8516 -8.2962 -0.6437 20 6 5.9752 -7.1946 0.8368 21 6 7.2828 -7.8300 0.3580 22 6 7.3172 -9.2839 0.7558 23 6 8.5340 -9.9461 0.7544 24 6 8.6029 -11.2798 1.1044 25 6 7.4509 -11.9619 1.4598 26 9 7.5157 -13.2676 1.8006 27 6 6.2351 -11.3050 1.4649 28 6 6.1645 -9.9610 1.1132 29 8 4.9518 -9.3490 1.1335 30 6 1.2597 -4.8285 -0.5971 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.1221 -4.1590 1.9401 34 1 2.9275 -4.3559 1.9127 35 1 3.6911 -5.9281 -0.4995 36 1 5.8495 -6.2167 0.3720 37 1 5.9956 -7.0867 1.9213 38 1 8.1264 -7.3097 0.8115 39 1 7.3477 -7.7492 -0.7270 40 1 9.4336 -9.4162 0.4778 41 1 9.5542 -11.7910 1.1010 42 1 5.3370 -11.8369 1.7425 43 1 1.5905 -5.1205 -1.5938 44 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020394897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:52 Heat of formation + Delta-G solvation = -61.664882 kcal Electronic energy + Delta-G solvation = -27677.005113 eV Core-core repulsion = 23509.842995 eV Total energy + Delta-G solvation = -4167.162118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.26704 -41.36999 -39.89866 -38.25447 -37.31685 -34.88224 -34.07093 -32.73080 -31.04046 -30.69348 -29.82925 -26.86483 -25.20006 -24.54039 -24.28392 -23.20721 -22.44583 -21.47476 -20.39028 -19.13441 -18.67773 -17.92164 -17.23677 -17.13814 -16.32236 -16.24312 -15.94644 -15.82228 -15.25917 -15.08659 -14.92136 -14.73576 -14.36340 -14.06975 -13.94242 -13.74421 -13.44453 -13.42357 -13.33932 -12.72804 -12.32106 -12.15973 -11.92475 -11.84575 -11.71234 -11.59939 -11.50204 -11.03597 -10.95077 -10.84207 -10.40954 -10.27063 -9.98820 -9.83836 -9.63285 -9.18608 -8.99596 -8.90010 -8.62951 -7.04286 -5.85179 -3.14586 0.67321 0.84211 2.23168 2.40205 3.08258 3.31928 3.37652 3.42954 3.44984 3.96997 4.05439 4.19481 4.20753 4.35985 4.51253 4.52563 4.58253 4.71050 4.77574 4.93641 5.01176 5.03355 5.13205 5.29168 5.34126 5.37557 5.43021 5.52321 5.60757 5.64816 5.75685 5.79648 5.82939 5.92953 6.04094 6.18401 6.24737 6.27401 6.38906 6.54091 6.60813 6.90836 7.00454 7.40259 7.61548 8.07984 8.32930 9.44319 10.01266 10.35378 11.36957 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002014 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.601890 B =13902.415727 C =14770.706057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.098 0.902 15 N -0.700 5.700 16 C 0.522 3.478 17 O -0.517 6.517 18 C 0.076 3.924 19 H 0.102 0.898 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.173 4.173 23 C -0.054 4.054 24 C -0.186 4.186 25 C 0.131 3.869 26 F -0.135 7.135 27 C -0.184 4.184 28 C 0.166 3.834 29 O -0.284 6.284 30 C -0.159 4.159 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.401 0.599 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.065 0.935 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.289 -21.417 -1.644 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.055 3.945 11 H 0.092 0.908 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.116 0.884 15 N -0.352 5.352 16 C 0.306 3.694 17 O -0.391 6.391 18 C 0.016 3.984 19 H 0.119 0.881 20 C -0.190 4.190 21 C -0.112 4.112 22 C -0.174 4.174 23 C -0.072 4.072 24 C -0.205 4.205 25 C 0.112 3.888 26 F -0.113 7.113 27 C -0.203 4.203 28 C 0.120 3.880 29 O -0.196 6.196 30 C -0.198 4.198 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.083 0.917 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.676 -21.698 -0.923 27.381 hybrid contribution 0.538 0.961 -0.279 1.136 sum 17.214 -20.737 -1.201 26.977 Atomic orbital electron populations 1.69655 1.05147 1.25846 1.57160 1.24781 0.95540 0.97849 1.02659 0.86189 0.78678 0.83764 0.77518 1.21659 1.21718 1.20733 1.19270 0.91026 0.84195 1.43296 0.91118 1.42397 1.05800 0.99828 1.86912 1.21644 0.95037 0.85223 0.92621 0.90846 1.24357 1.02135 0.95036 1.00314 1.21868 0.84451 0.94123 0.98430 0.88444 1.45535 1.22556 1.25012 1.42085 1.19795 0.86469 0.81066 0.82109 1.90756 1.54066 1.62826 1.31474 1.22315 0.94750 0.84204 0.97162 0.88084 1.22257 0.93311 0.99371 1.04037 1.20499 0.98224 0.90535 1.01931 1.19924 0.92782 0.97131 1.07524 1.20738 0.96951 0.93256 0.96256 1.21018 0.97797 0.95619 1.06084 1.17232 0.93809 0.78442 0.99312 1.91520 1.97106 1.33033 1.89686 1.20438 0.98265 0.92850 1.08767 1.18315 0.84123 0.90528 0.95030 1.86081 1.28445 1.35401 1.69661 1.23873 1.01762 0.97099 0.97113 0.93378 0.77967 0.89452 0.92354 0.76407 0.88413 0.89364 0.89049 0.89668 0.84530 0.84497 0.83708 0.91670 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -16.89 5.40 -52.54 -0.28 -17.18 16 10 C 0.17 2.99 4.37 -67.02 -0.29 2.70 16 11 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 12 C -0.18 -2.92 7.69 -25.82 -0.20 -3.12 16 13 C 0.12 1.63 4.32 -67.12 -0.29 1.34 16 14 H 0.10 1.48 7.46 -51.93 -0.39 1.09 16 15 N -0.70 -7.99 5.22 -53.02 -0.28 -8.27 16 16 C 0.52 6.71 7.19 -10.98 -0.08 6.63 16 17 O -0.52 -9.06 16.12 -14.21 -0.23 -9.29 16 18 C 0.08 0.73 3.21 -27.67 -0.09 0.64 16 19 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -1.13 5.46 -26.49 -0.14 -1.28 16 21 C -0.08 -0.44 5.86 -27.82 -0.16 -0.61 16 22 C -0.17 -1.39 5.75 -104.42 -0.60 -1.99 16 23 C -0.05 -0.36 9.66 -39.54 -0.38 -0.74 16 24 C -0.19 -1.38 10.03 -39.54 -0.40 -1.77 16 25 C 0.13 1.22 7.30 -39.49 -0.29 0.93 16 26 F -0.13 -1.33 17.27 2.25 0.04 -1.30 16 27 C -0.18 -1.86 9.91 -39.28 -0.39 -2.25 16 28 C 0.17 1.73 6.47 -39.20 -0.25 1.47 16 29 O -0.28 -3.46 9.46 -39.03 -0.37 -3.83 16 30 C -0.16 -2.33 7.57 -25.92 -0.20 -2.52 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.39 9.81 7.92 -40.82 -0.32 9.48 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.45 8.50 -40.82 -0.35 3.10 16 36 H 0.10 0.56 7.91 -51.93 -0.41 0.15 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -33.08 372.98 -9.89 -42.97 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.08 Total: 8.93 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.01 Total: -7.70 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.16 Total: -52.08 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.60 Total: -13.12 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.08 -9.89 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020394897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.690 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds