Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47083 * 270.00228 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00318 * 3 2 1 6 6 H 1.48505 * 109.47389 * 150.00345 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46496 * 113.68971 * 89.19569 * 13 12 10 16 16 C 1.34784 * 119.99758 * 107.45966 * 15 13 12 17 17 O 1.21285 * 119.99985 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99866 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.68162 * 305.00198 * 18 16 15 20 20 C 1.53405 * 109.68206 * 65.52662 * 18 16 15 21 21 C 1.53058 * 108.30318 * 184.39500 * 20 18 16 22 22 C 1.50776 * 109.71253 * 311.84215 * 21 20 18 23 23 C 1.38524 * 118.73578 * 197.56942 * 22 21 20 24 24 C 1.38057 * 120.35633 * 180.42678 * 23 22 21 25 25 C 1.38522 * 119.95191 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.05038 * 179.89649 * 25 24 23 27 27 C 1.38189 * 119.90327 * 359.91794 * 25 24 23 28 28 C 1.38389 * 121.39358 * 17.83288 * 22 21 20 29 29 O 1.35849 * 121.80312 * 359.45993 * 28 22 21 30 30 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 31 31 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 34 34 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 35 35 H 0.97001 * 120.00688 * 287.46664 * 15 13 12 36 36 H 1.09000 * 109.70081 * 304.13595 * 20 18 16 37 37 H 1.09003 * 109.69919 * 64.74365 * 20 18 16 38 38 H 1.09000 * 109.44182 * 191.75188 * 21 20 18 39 39 H 1.08998 * 109.36432 * 71.88013 * 21 20 18 40 40 H 1.08009 * 119.82513 * 0.41660 * 23 22 21 41 41 H 1.07999 * 120.03107 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.89804 * 180.02562 * 27 25 24 43 43 H 1.09002 * 113.61445 * 139.98212 * 30 13 12 44 44 H 1.09002 * 113.61408 * 270.79943 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1305 -6.4023 0.9530 15 7 3.1217 -6.3290 0.1757 16 6 3.5042 -7.4654 0.7915 17 8 2.7921 -7.9669 1.6355 18 6 4.8159 -8.1133 0.4303 19 1 4.8516 -8.2962 -0.6437 20 6 5.9752 -7.1946 0.8368 21 6 7.2828 -7.8300 0.3580 22 6 7.3172 -9.2839 0.7558 23 6 8.5340 -9.9461 0.7544 24 6 8.6029 -11.2798 1.1044 25 6 7.4509 -11.9619 1.4598 26 9 7.5157 -13.2676 1.8006 27 6 6.2351 -11.3050 1.4649 28 6 6.1645 -9.9610 1.1132 29 8 4.9518 -9.3490 1.1335 30 6 1.2597 -4.8285 -0.5971 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.1221 -4.1590 1.9401 34 1 2.9275 -4.3559 1.9127 35 1 3.6911 -5.9281 -0.4995 36 1 5.8495 -6.2167 0.3720 37 1 5.9956 -7.0867 1.9213 38 1 8.1264 -7.3097 0.8115 39 1 7.3477 -7.7492 -0.7270 40 1 9.4336 -9.4162 0.4778 41 1 9.5542 -11.7910 1.1010 42 1 5.3370 -11.8369 1.7425 43 1 1.5905 -5.1205 -1.5938 44 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020394897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = -82.309765 kcal Electronic energy + Delta-G solvation = -27677.900343 eV Core-core repulsion = 23509.842995 eV Total energy + Delta-G solvation = -4168.057347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.98075 -42.12674 -40.96103 -39.38768 -38.16280 -35.84490 -35.41138 -34.09488 -32.07076 -31.51116 -31.15351 -27.64727 -26.54166 -26.23290 -24.91087 -23.93610 -23.81827 -22.45819 -21.09900 -20.43413 -19.43047 -19.21358 -18.66656 -17.96670 -17.17564 -17.06739 -16.89355 -16.66380 -16.52837 -16.03887 -15.92551 -15.72847 -15.51003 -15.29598 -15.09507 -14.56826 -14.43966 -14.20891 -14.08098 -13.91489 -13.54844 -13.41682 -13.30943 -12.93355 -12.79906 -12.58810 -12.40350 -12.23798 -12.15055 -12.05775 -11.82869 -11.73848 -11.66276 -11.20505 -10.87925 -10.82356 -10.11143 -9.81593 -9.26751 -8.97102 -7.92803 -5.21142 0.04941 0.21653 1.38511 1.42427 1.49925 1.51118 1.59250 2.39541 2.54516 2.58416 3.33454 3.38710 3.44100 3.46122 3.63854 3.70089 3.76226 3.82791 3.88713 3.97716 4.00274 4.11335 4.20506 4.33793 4.35053 4.43600 4.50793 4.71968 4.80287 4.91190 4.92736 4.93610 4.99384 5.05065 5.11067 5.14614 5.17437 5.20087 5.23678 5.36219 5.53015 5.65748 5.70142 6.22282 6.29051 6.47674 7.11622 7.35426 8.12604 8.34037 9.30436 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002014 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.601890 B =13902.415727 C =14770.706057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.728 5.728 10 C 0.155 3.845 11 H 0.091 0.909 12 C -0.174 4.174 13 C 0.134 3.866 14 H 0.086 0.914 15 N -0.684 5.684 16 C 0.521 3.479 17 O -0.571 6.571 18 C 0.077 3.923 19 H 0.132 0.868 20 C -0.149 4.149 21 C -0.071 4.071 22 C -0.170 4.170 23 C -0.047 4.047 24 C -0.180 4.180 25 C 0.113 3.887 26 F -0.144 7.144 27 C -0.205 4.205 28 C 0.142 3.858 29 O -0.317 6.317 30 C -0.142 4.142 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.420 0.580 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.091 0.909 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.919 -21.243 -3.283 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.109 0.891 12 C -0.216 4.216 13 C 0.028 3.972 14 H 0.104 0.896 15 N -0.337 5.337 16 C 0.307 3.693 17 O -0.450 6.450 18 C 0.018 3.982 19 H 0.150 0.850 20 C -0.186 4.186 21 C -0.107 4.107 22 C -0.171 4.171 23 C -0.064 4.064 24 C -0.199 4.199 25 C 0.094 3.906 26 F -0.123 7.123 27 C -0.224 4.224 28 C 0.097 3.903 29 O -0.231 6.231 30 C -0.181 4.181 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.192 0.808 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.110 0.890 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.382 -21.559 -2.590 29.781 hybrid contribution -0.548 0.796 0.265 1.002 sum 19.833 -20.764 -2.325 28.808 Atomic orbital electron populations 1.69816 1.06685 1.25956 1.59675 1.25586 0.96345 1.01228 1.03998 0.85167 0.77730 0.79615 0.77404 1.21312 1.22845 1.19257 1.19719 0.91680 0.85203 1.40616 0.90010 1.42620 1.05466 1.01142 1.87246 1.22015 0.95880 0.83804 0.93786 0.89136 1.24202 1.01336 0.96378 0.99646 1.21516 0.85480 0.92920 0.97332 0.89570 1.45339 1.21745 1.24536 1.42087 1.20454 0.87155 0.80730 0.80952 1.90736 1.55958 1.64322 1.33946 1.22440 0.93349 0.83947 0.98457 0.85041 1.22292 0.93262 1.00029 1.03048 1.20619 0.97723 0.88732 1.03653 1.20271 0.92248 0.98366 1.06229 1.21163 0.97663 0.92859 0.94743 1.21363 0.97826 0.96116 1.04592 1.17447 0.94361 0.78305 1.00476 1.91490 1.97155 1.33688 1.89956 1.20501 0.98461 0.93496 1.09965 1.18505 0.84435 0.90664 0.96718 1.86018 1.29892 1.36513 1.70657 1.23679 1.00969 0.95022 0.98472 0.94178 0.79485 0.91476 0.92252 0.74224 0.86116 0.91407 0.86892 0.87005 0.80811 0.82209 0.85048 0.89046 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.24 -12.58 9.97 84.03 0.84 -11.74 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -34.32 5.40 -320.15 -1.73 -36.05 16 10 C 0.16 5.31 4.37 45.58 0.20 5.51 16 11 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 12 C -0.17 -5.65 7.69 31.18 0.24 -5.41 16 13 C 0.13 3.60 4.32 45.52 0.20 3.80 16 14 H 0.09 2.61 7.46 -2.39 -0.02 2.60 16 15 N -0.68 -14.13 5.22 -440.03 -2.29 -16.42 16 16 C 0.52 12.89 7.19 87.66 0.63 13.52 16 17 O -0.57 -20.46 16.12 15.85 0.26 -20.21 16 18 C 0.08 1.36 3.21 29.98 0.10 1.45 16 19 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.15 -1.77 5.46 30.75 0.17 -1.60 16 21 C -0.07 -0.52 5.86 29.89 0.18 -0.35 16 22 C -0.17 -2.25 5.75 -19.74 -0.11 -2.37 16 23 C -0.05 -0.44 9.66 22.29 0.22 -0.23 16 24 C -0.18 -2.23 10.03 22.29 0.22 -2.00 16 25 C 0.11 2.08 7.30 22.33 0.16 2.24 16 26 F -0.14 -2.90 17.27 44.97 0.78 -2.13 16 27 C -0.20 -4.33 9.91 22.47 0.22 -4.11 16 28 C 0.14 2.88 6.47 22.51 0.15 3.03 16 29 O -0.32 -7.78 9.46 -72.96 -0.69 -8.47 16 30 C -0.14 -3.91 7.57 31.12 0.24 -3.68 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.37 19.27 7.92 -92.71 -0.73 18.54 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.42 5.65 8.50 -92.71 -0.79 4.86 16 36 H 0.12 0.86 7.91 -2.39 -0.02 0.84 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -75.11 372.98 2.25 -72.86 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.48 Total: 27.63 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.10 Total: -5.89 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -3.74 Total: -110.33 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.44 Total: -28.68 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.11 2.25 -72.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020394897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.447 kcal (2) G-P(sol) polarization free energy of solvation -75.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds