Wall clock time and date at job start Tue Mar 31 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00159 * 179.97438 * 9 7 2 11 11 H 1.08991 * 112.84730 * 25.32998 * 10 9 7 12 12 C 1.53780 * 113.61363 * 156.53227 * 10 9 7 13 13 C 1.53784 * 87.08255 * 139.97916 * 12 10 9 14 14 H 1.08997 * 113.61053 * 89.19483 * 13 12 10 15 15 N 1.46497 * 113.61673 * 220.01495 * 13 12 10 16 16 C 1.34769 * 120.00242 * 205.00202 * 15 13 12 17 17 O 1.21282 * 120.00056 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99969 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.70011 * 299.43177 * 18 16 15 20 20 C 1.53415 * 109.70128 * 60.00179 * 18 16 15 21 21 O 1.42820 * 108.38960 * 184.41313 * 20 18 16 22 22 C 1.35854 * 117.87792 * 310.87068 * 21 20 18 23 23 C 1.39100 * 118.48162 * 197.12663 * 22 21 20 24 24 C 1.38189 * 120.19781 * 180.25607 * 23 22 21 25 25 F 1.35105 * 120.04678 * 179.97438 * 24 23 22 26 26 C 1.38518 * 119.90593 * 359.97438 * 24 23 22 27 27 C 1.38066 * 119.95715 * 359.90816 * 26 24 23 28 28 C 1.38401 * 121.79766 * 17.19040 * 22 21 20 29 29 C 1.50775 * 121.39439 * 359.45169 * 28 22 21 30 30 C 1.53779 * 113.61232 * 254.13660 * 10 9 7 31 31 H 0.96993 * 120.00105 * 180.02562 * 1 2 3 32 32 H 0.97008 * 120.00358 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61255 * 254.52929 * 12 10 9 34 34 H 1.09001 * 113.61501 * 25.34590 * 12 10 9 35 35 H 0.97003 * 119.99591 * 25.00159 * 15 13 12 36 36 H 1.08995 * 109.67721 * 304.13247 * 20 18 16 37 37 H 1.08999 * 109.68198 * 64.68276 * 20 18 16 38 38 H 1.07998 * 119.90511 * 0.22597 * 23 22 21 39 39 H 1.08004 * 120.02413 * 179.88946 * 26 24 23 40 40 H 1.07990 * 119.83189 * 180.02562 * 27 26 24 41 41 H 1.09003 * 109.43904 * 257.87144 * 29 28 22 42 42 H 1.09002 * 109.43532 * 137.99431 * 29 28 22 43 43 H 1.08996 * 113.61629 * 334.56717 * 30 10 9 44 44 H 1.08996 * 113.61839 * 105.47288 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0559 -3.5694 0.4303 12 6 1.2468 -4.8365 0.5617 13 6 1.8605 -5.6903 -0.5605 14 1 2.8042 -6.1608 -0.2846 15 7 0.9138 -6.6280 -1.1691 16 6 1.3652 -7.7475 -1.7686 17 8 2.5552 -7.9784 -1.8046 18 6 0.3912 -8.7124 -2.3941 19 1 -0.2914 -9.0906 -1.6331 20 6 -0.4052 -8.0018 -3.4961 21 8 -1.3878 -8.9086 -3.9980 22 6 -0.9825 -10.1597 -4.3386 23 6 -1.8115 -10.9277 -5.1497 24 6 -1.4366 -12.2071 -5.5135 25 9 -2.2443 -12.9506 -6.3010 26 6 -0.2315 -12.7261 -5.0696 27 6 0.5934 -11.9641 -4.2664 28 6 0.2223 -10.6807 -3.9000 29 6 1.1546 -9.8776 -3.0286 30 6 2.0325 -4.3828 -1.3548 31 1 -0.4850 -0.8400 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.5552 -5.1422 1.5614 34 1 0.1682 -4.7061 0.4728 35 1 -0.0381 -6.4432 -1.1406 36 1 -0.8959 -7.1201 -3.0839 37 1 0.2666 -7.7056 -4.3017 38 1 -2.7511 -10.5232 -5.4958 39 1 0.0626 -13.7265 -5.3513 40 1 1.5326 -12.3706 -3.9219 41 1 1.9725 -9.4881 -3.6349 42 1 1.5583 -10.5170 -2.2436 43 1 1.1693 -4.1289 -1.9700 44 1 2.9743 -4.3229 -1.9002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022078689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:18 Heat of formation + Delta-G solvation = -66.739835 kcal Electronic energy + Delta-G solvation = -27540.290350 eV Core-core repulsion = 23372.908165 eV Total energy + Delta-G solvation = -4167.382185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.29649 -41.40685 -39.94319 -38.25104 -37.72542 -34.55588 -34.45244 -33.03620 -30.95881 -30.81684 -29.58735 -26.13371 -25.34194 -25.30107 -24.00956 -23.38056 -22.47150 -21.15714 -20.23491 -19.40137 -18.77391 -17.83113 -17.47316 -17.30219 -16.49310 -16.22163 -16.06959 -15.75426 -15.45308 -15.19653 -15.08819 -14.85407 -14.31656 -14.10326 -13.94018 -13.76551 -13.63725 -13.53573 -13.32934 -13.03557 -12.33984 -12.14049 -12.09896 -11.98740 -11.67366 -11.33152 -11.14840 -11.08095 -10.93450 -10.72233 -10.55770 -10.37862 -10.04393 -9.90869 -9.23128 -9.21279 -9.02465 -8.91042 -8.66381 -7.12250 -6.18379 -3.19067 0.65350 0.81056 2.34505 2.62295 2.97093 3.12047 3.48378 3.52582 3.66671 3.91663 4.01927 4.13557 4.21535 4.34749 4.54941 4.56153 4.62277 4.68797 4.85301 4.90646 4.93952 5.04606 5.05675 5.09302 5.19516 5.40730 5.44502 5.48220 5.60354 5.64325 5.69150 5.73212 5.74338 5.91812 5.94778 6.05835 6.12239 6.24807 6.27545 6.44809 6.55595 6.86125 6.88408 7.37638 7.74736 8.02410 8.67325 9.12842 9.99285 10.13415 11.29644 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001888 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.926080 B =14825.077767 C =15464.952487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.081 0.919 12 C -0.160 4.160 13 C 0.118 3.882 14 H 0.111 0.889 15 N -0.712 5.712 16 C 0.521 3.479 17 O -0.535 6.535 18 C -0.149 4.149 19 H 0.113 0.887 20 C 0.072 3.928 21 O -0.304 6.304 22 C 0.159 3.841 23 C -0.185 4.185 24 C 0.129 3.871 25 F -0.135 7.135 26 C -0.184 4.184 27 C -0.053 4.053 28 C -0.165 4.165 29 C -0.058 4.058 30 C -0.176 4.176 31 H 0.255 0.745 32 H 0.368 0.632 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -25.893 -7.840 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.099 0.901 12 C -0.200 4.200 13 C 0.013 3.987 14 H 0.129 0.871 15 N -0.362 5.362 16 C 0.306 3.694 17 O -0.412 6.412 18 C -0.171 4.171 19 H 0.131 0.869 20 C -0.003 4.003 21 O -0.218 6.218 22 C 0.113 3.887 23 C -0.204 4.204 24 C 0.110 3.890 25 F -0.114 7.114 26 C -0.203 4.203 27 C -0.071 4.071 28 C -0.166 4.166 29 C -0.095 4.095 30 C -0.218 4.218 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.185 -24.257 -7.867 25.528 hybrid contribution -0.617 -1.789 -0.119 1.896 sum -1.802 -26.046 -7.986 27.302 Atomic orbital electron populations 1.70869 1.06063 1.28409 1.53399 1.25817 0.97042 1.01144 1.00175 0.83191 0.73912 0.75225 0.76306 1.22249 1.22068 1.21347 1.20132 0.92185 0.85772 1.48670 0.91508 1.42361 1.04690 1.00757 1.88299 1.21280 0.95409 0.84460 0.92694 0.90149 1.23862 1.00963 0.97459 0.97666 1.22561 0.93439 0.87590 0.95102 0.87099 1.46100 1.10781 1.22069 1.57203 1.20109 0.89107 0.81657 0.78492 1.90714 1.16581 1.75237 1.58674 1.22053 0.98673 0.96883 0.99478 0.86856 1.23020 0.90806 0.90860 0.95658 1.86047 1.36863 1.20032 1.78818 1.18311 0.92432 0.84904 0.93069 1.20421 1.03159 0.93953 1.02860 1.17247 0.89576 0.89321 0.92887 1.91521 1.72306 1.75878 1.71682 1.21031 0.94401 1.02003 1.02820 1.20757 0.99040 0.92169 0.95171 1.19946 0.96421 0.96750 1.03505 1.20309 0.96310 0.94562 0.98362 1.24355 1.01859 0.94917 1.00665 0.93412 0.79842 0.91326 0.90076 0.76563 0.86474 0.90485 0.83812 0.84440 0.84424 0.88797 0.89004 0.90311 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.45 13.70 55.49 0.76 -27.69 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.21 9.97 -15.06 -0.15 -9.36 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.23 5.41 -52.64 -0.28 -17.51 16 10 C 0.17 3.25 4.47 -67.12 -0.30 2.95 16 11 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 12 C -0.16 -2.32 7.58 -25.92 -0.20 -2.52 16 13 C 0.12 1.59 4.24 -67.03 -0.28 1.31 16 14 H 0.11 1.59 7.46 -51.93 -0.39 1.21 16 15 N -0.71 -7.75 5.24 -52.93 -0.28 -8.02 16 16 C 0.52 5.91 7.16 -10.99 -0.08 5.83 16 17 O -0.54 -8.03 15.40 5.56 0.09 -7.95 16 18 C -0.15 -1.26 2.76 -91.52 -0.25 -1.51 16 19 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 20 C 0.07 0.58 6.25 37.37 0.23 0.81 16 21 O -0.30 -2.89 10.27 -19.28 -0.20 -3.09 16 22 C 0.16 1.50 6.47 -39.20 -0.25 1.24 16 23 C -0.18 -1.68 9.91 -39.28 -0.39 -2.07 16 24 C 0.13 1.14 7.30 -39.50 -0.29 0.85 16 25 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.18 -1.37 10.03 -39.54 -0.40 -1.77 16 27 C -0.05 -0.39 9.66 -39.54 -0.38 -0.77 16 28 C -0.17 -1.41 5.75 -104.42 -0.60 -2.01 16 29 C -0.06 -0.49 4.65 -27.81 -0.13 -0.62 16 30 C -0.18 -2.88 7.69 -25.83 -0.20 -3.07 16 31 H 0.25 7.51 6.77 -40.82 -0.28 7.23 16 32 H 0.37 8.97 6.74 -40.82 -0.28 8.70 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 35 H 0.40 3.43 8.13 -40.82 -0.33 3.09 16 36 H 0.12 0.76 7.50 -51.93 -0.39 0.37 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -32.80 369.28 -9.07 -41.87 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.91 Total: 9.71 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.76 Total: -12.05 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.20 Total: -53.23 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.11 Total: -11.04 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.80 -9.07 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022078689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.865 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds