Wall clock time and date at job start Tue Mar 31 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00159 * 179.97438 * 9 7 2 11 11 H 1.08991 * 112.84730 * 25.32998 * 10 9 7 12 12 C 1.53780 * 113.61363 * 156.53227 * 10 9 7 13 13 C 1.53784 * 87.08255 * 139.97916 * 12 10 9 14 14 H 1.08997 * 113.61053 * 89.19483 * 13 12 10 15 15 N 1.46497 * 113.61673 * 220.01495 * 13 12 10 16 16 C 1.34769 * 120.00242 * 205.00202 * 15 13 12 17 17 O 1.21282 * 120.00056 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99969 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.70011 * 299.43177 * 18 16 15 20 20 C 1.53415 * 109.70128 * 60.00179 * 18 16 15 21 21 O 1.42820 * 108.38960 * 184.41313 * 20 18 16 22 22 C 1.35854 * 117.87792 * 310.87068 * 21 20 18 23 23 C 1.39100 * 118.48162 * 197.12663 * 22 21 20 24 24 C 1.38189 * 120.19781 * 180.25607 * 23 22 21 25 25 F 1.35105 * 120.04678 * 179.97438 * 24 23 22 26 26 C 1.38518 * 119.90593 * 359.97438 * 24 23 22 27 27 C 1.38066 * 119.95715 * 359.90816 * 26 24 23 28 28 C 1.38401 * 121.79766 * 17.19040 * 22 21 20 29 29 C 1.50775 * 121.39439 * 359.45169 * 28 22 21 30 30 C 1.53779 * 113.61232 * 254.13660 * 10 9 7 31 31 H 0.96993 * 120.00105 * 180.02562 * 1 2 3 32 32 H 0.97008 * 120.00358 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61255 * 254.52929 * 12 10 9 34 34 H 1.09001 * 113.61501 * 25.34590 * 12 10 9 35 35 H 0.97003 * 119.99591 * 25.00159 * 15 13 12 36 36 H 1.08995 * 109.67721 * 304.13247 * 20 18 16 37 37 H 1.08999 * 109.68198 * 64.68276 * 20 18 16 38 38 H 1.07998 * 119.90511 * 0.22597 * 23 22 21 39 39 H 1.08004 * 120.02413 * 179.88946 * 26 24 23 40 40 H 1.07990 * 119.83189 * 180.02562 * 27 26 24 41 41 H 1.09003 * 109.43904 * 257.87144 * 29 28 22 42 42 H 1.09002 * 109.43532 * 137.99431 * 29 28 22 43 43 H 1.08996 * 113.61629 * 334.56717 * 30 10 9 44 44 H 1.08996 * 113.61839 * 105.47288 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0559 -3.5694 0.4303 12 6 1.2468 -4.8365 0.5617 13 6 1.8605 -5.6903 -0.5605 14 1 2.8042 -6.1608 -0.2846 15 7 0.9138 -6.6280 -1.1691 16 6 1.3652 -7.7475 -1.7686 17 8 2.5552 -7.9784 -1.8046 18 6 0.3912 -8.7124 -2.3941 19 1 -0.2914 -9.0906 -1.6331 20 6 -0.4052 -8.0018 -3.4961 21 8 -1.3878 -8.9086 -3.9980 22 6 -0.9825 -10.1597 -4.3386 23 6 -1.8115 -10.9277 -5.1497 24 6 -1.4366 -12.2071 -5.5135 25 9 -2.2443 -12.9506 -6.3010 26 6 -0.2315 -12.7261 -5.0696 27 6 0.5934 -11.9641 -4.2664 28 6 0.2223 -10.6807 -3.9000 29 6 1.1546 -9.8776 -3.0286 30 6 2.0325 -4.3828 -1.3548 31 1 -0.4850 -0.8400 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.5552 -5.1422 1.5614 34 1 0.1682 -4.7061 0.4728 35 1 -0.0381 -6.4432 -1.1406 36 1 -0.8959 -7.1201 -3.0839 37 1 0.2666 -7.7056 -4.3017 38 1 -2.7511 -10.5232 -5.4958 39 1 0.0626 -13.7265 -5.3513 40 1 1.5326 -12.3706 -3.9219 41 1 1.9725 -9.4881 -3.6349 42 1 1.5583 -10.5170 -2.2436 43 1 1.1693 -4.1289 -1.9700 44 1 2.9743 -4.3229 -1.9002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022078689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:17 Heat of formation + Delta-G solvation = -87.401923 kcal Electronic energy + Delta-G solvation = -27541.186325 eV Core-core repulsion = 23372.908165 eV Total energy + Delta-G solvation = -4168.278160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98304 -42.13051 -40.94808 -39.47046 -38.39461 -36.13853 -35.30054 -34.37840 -31.86409 -31.54202 -31.13978 -26.80098 -26.64063 -26.43675 -25.56365 -24.13331 -23.69586 -22.06982 -21.19991 -20.57485 -19.48463 -19.43437 -18.60801 -18.08120 -17.42851 -17.14859 -16.81478 -16.66337 -16.43976 -16.12683 -15.97842 -15.86669 -15.63190 -15.49314 -15.10358 -14.76886 -14.57835 -14.42186 -14.20686 -13.99015 -13.66870 -13.39711 -12.86539 -12.77488 -12.70987 -12.62883 -12.34368 -12.21266 -12.13521 -11.96010 -11.87396 -11.81450 -11.72843 -11.21997 -10.92812 -10.84429 -10.08308 -9.84369 -9.31215 -9.09572 -8.39167 -5.33200 0.01074 0.19150 1.43707 1.59199 1.68884 1.83198 1.92515 2.10207 2.47972 2.71485 3.28346 3.33628 3.37499 3.43565 3.52227 3.60648 3.70696 3.76980 3.84050 3.87859 3.98048 4.06640 4.11475 4.21923 4.25247 4.35656 4.40923 4.45769 4.67229 4.79279 4.81109 4.82294 4.88211 4.98381 4.99472 5.05068 5.07933 5.13451 5.28587 5.32637 5.55149 5.63227 5.63715 6.21514 6.46344 6.50933 7.09234 7.12357 8.00085 8.10478 9.12842 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001888 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.926080 B =14825.077767 C =15464.952487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.104 4.104 3 Si 1.128 2.872 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.293 1.293 7 C -0.334 4.334 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.151 3.849 11 H 0.073 0.927 12 C -0.140 4.140 13 C 0.140 3.860 14 H 0.109 0.891 15 N -0.703 5.703 16 C 0.526 3.474 17 O -0.571 6.571 18 C -0.138 4.138 19 H 0.132 0.868 20 C 0.071 3.929 21 O -0.313 6.313 22 C 0.143 3.857 23 C -0.195 4.195 24 C 0.116 3.884 25 F -0.142 7.142 26 C -0.180 4.180 27 C -0.051 4.051 28 C -0.168 4.168 29 C -0.056 4.056 30 C -0.169 4.169 31 H 0.246 0.754 32 H 0.363 0.637 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -27.455 -7.679 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.296 4.296 3 Si 0.953 3.047 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.220 1.220 7 C -0.465 4.465 8 H 0.084 0.916 9 N -0.376 5.376 10 C 0.041 3.959 11 H 0.091 0.909 12 C -0.180 4.180 13 C 0.034 3.966 14 H 0.127 0.873 15 N -0.354 5.354 16 C 0.313 3.687 17 O -0.450 6.450 18 C -0.159 4.159 19 H 0.150 0.850 20 C -0.004 4.004 21 O -0.227 6.227 22 C 0.097 3.903 23 C -0.215 4.215 24 C 0.097 3.903 25 F -0.120 7.120 26 C -0.198 4.198 27 C -0.069 4.069 28 C -0.169 4.169 29 C -0.093 4.093 30 C -0.211 4.211 31 H 0.056 0.944 32 H 0.195 0.805 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.701 -25.883 -7.713 27.016 hybrid contribution -0.717 -1.414 -0.200 1.598 sum -1.418 -27.296 -7.913 28.456 Atomic orbital electron populations 1.70968 1.07082 1.28008 1.56255 1.27131 0.97178 1.04588 1.00672 0.82609 0.73595 0.71748 0.76752 1.21358 1.19905 1.21977 1.20454 0.92395 0.87199 1.46478 0.91630 1.42502 1.04589 1.01596 1.88866 1.21623 0.95561 0.83847 0.94872 0.90850 1.23664 1.00850 0.94872 0.98583 1.22135 0.93841 0.86969 0.93660 0.87336 1.45944 1.11168 1.21494 1.56770 1.20512 0.88968 0.81600 0.77643 1.90708 1.18333 1.76020 1.59964 1.21983 0.98073 0.96055 0.99801 0.85043 1.23109 0.90803 0.91108 0.95421 1.86040 1.37314 1.20266 1.79034 1.18456 0.93030 0.85047 0.93740 1.20529 1.03459 0.94306 1.03159 1.17445 0.90194 0.89394 0.93298 1.91503 1.72618 1.75984 1.71942 1.21304 0.93594 1.02890 1.02032 1.21057 0.99781 0.91562 0.94481 1.20029 0.96055 0.97303 1.03541 1.20279 0.95952 0.94654 0.98404 1.24174 1.01265 0.96331 0.99326 0.94368 0.80455 0.89931 0.89227 0.74875 0.84834 0.90987 0.83648 0.82342 0.81998 0.89899 0.88234 0.90869 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.65 13.70 21.65 0.30 -59.35 16 2 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 3 Si 1.13 51.33 29.92 68.60 2.05 53.38 16 4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.33 -18.32 9.97 84.03 0.84 -17.48 16 8 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.74 -35.23 5.41 -320.46 -1.73 -36.97 16 10 C 0.15 5.56 4.47 45.52 0.20 5.77 16 11 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 12 C -0.14 -3.81 7.58 31.12 0.24 -3.58 16 13 C 0.14 3.54 4.24 45.58 0.19 3.73 16 14 H 0.11 2.92 7.46 -2.39 -0.02 2.91 16 15 N -0.70 -13.71 5.24 -439.77 -2.30 -16.01 16 16 C 0.53 10.88 7.16 87.66 0.63 11.51 16 17 O -0.57 -16.32 15.40 -3.04 -0.05 -16.37 16 18 C -0.14 -2.03 2.76 -11.38 -0.03 -2.06 16 19 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 20 C 0.07 1.03 6.25 72.12 0.45 1.48 16 21 O -0.31 -5.57 10.27 -91.91 -0.94 -6.52 16 22 C 0.14 2.54 6.47 22.52 0.15 2.68 16 23 C -0.20 -3.44 9.91 22.47 0.22 -3.21 16 24 C 0.12 1.94 7.30 22.32 0.16 2.10 16 25 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 26 C -0.18 -2.32 10.03 22.30 0.22 -2.09 16 27 C -0.05 -0.62 9.66 22.30 0.22 -0.41 16 28 C -0.17 -2.58 5.75 -19.73 -0.11 -2.70 16 29 C -0.06 -0.85 4.65 29.90 0.14 -0.71 16 30 C -0.17 -5.40 7.69 31.18 0.24 -5.16 16 31 H 0.25 14.81 6.77 -92.71 -0.63 14.18 16 32 H 0.36 17.88 6.74 -92.70 -0.62 17.26 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.41 5.94 8.13 -92.71 -0.75 5.19 16 36 H 0.13 1.45 7.50 -2.39 -0.02 1.43 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.16 1.14 8.06 -2.92 -0.02 1.12 16 41 H 0.08 1.47 7.71 -2.39 -0.02 1.45 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.81 369.28 2.13 -68.68 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.19 Total: 30.57 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.22 Total: -15.61 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -3.74 Total: -112.33 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.99 Total: -22.89 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -70.81 2.13 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022078689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.720 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds