Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47270 * 269.99411 * 3 2 1 5 5 H 1.48497 * 109.47431 * 29.99493 * 3 2 1 6 6 H 1.48508 * 109.47036 * 149.99617 * 3 2 1 7 7 C 1.38813 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99617 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99910 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99873 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.84959 * 312.92645 * 10 9 7 12 12 C 1.53781 * 113.61503 * 84.12276 * 10 9 7 13 13 C 1.53779 * 87.07962 * 89.11820 * 12 10 9 14 14 H 1.08996 * 113.61763 * 140.06288 * 13 12 10 15 15 N 1.46501 * 113.61654 * 270.88512 * 13 12 10 16 16 C 1.34773 * 120.00278 * 202.27167 * 15 13 12 17 17 O 1.21283 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00319 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.69620 * 300.56604 * 18 16 15 20 20 C 1.53409 * 109.69632 * 61.15745 * 18 16 15 21 21 O 1.42820 * 108.37781 * 184.42483 * 20 18 16 22 22 C 1.35902 * 117.85687 * 310.82044 * 21 20 18 23 23 C 1.39128 * 118.47139 * 197.31648 * 22 21 20 24 24 C 1.37971 * 120.25296 * 180.55709 * 23 22 21 25 25 C 1.38487 * 119.93025 * 359.46503 * 24 23 22 26 26 F 1.35092 * 120.03687 * 180.15195 * 25 24 23 27 27 C 1.38295 * 119.92356 * 0.16993 * 25 24 23 28 28 C 1.38356 * 121.79265 * 17.20880 * 22 21 20 29 29 C 1.50768 * 121.41148 * 359.52486 * 28 22 21 30 30 C 1.53779 * 87.08441 * 25.43182 * 13 12 10 31 31 H 0.97002 * 120.00047 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00102 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61656 * 334.57014 * 12 10 9 34 34 H 1.09004 * 113.61371 * 203.66274 * 12 10 9 35 35 H 0.97002 * 119.99591 * 22.26639 * 15 13 12 36 36 H 1.09000 * 109.68748 * 304.15029 * 20 18 16 37 37 H 1.09001 * 109.68322 * 64.66638 * 20 18 16 38 38 H 1.07999 * 119.87778 * 0.32338 * 23 22 21 39 39 H 1.07997 * 120.04037 * 179.73514 * 24 23 22 40 40 H 1.08005 * 119.84676 * 180.02562 * 27 25 24 41 41 H 1.09005 * 109.43165 * 137.87887 * 29 28 22 42 42 H 1.08995 * 109.43890 * 257.74944 * 29 28 22 43 43 H 1.08998 * 113.61487 * 89.11588 * 30 13 12 44 44 H 1.09000 * 113.61902 * 220.02153 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.7311 -3.1796 0.7363 12 6 4.2958 -3.0760 -1.4006 13 6 5.5977 -2.2631 -1.4952 14 1 6.4169 -2.8040 -1.9689 15 7 5.4111 -0.9180 -2.0450 16 6 6.4519 -0.2668 -2.6009 17 8 7.5432 -0.7942 -2.6456 18 6 6.2599 1.1165 -3.1670 19 1 5.5081 1.0896 -3.9557 20 6 5.8094 2.0723 -2.0548 21 8 5.5364 3.3465 -2.6393 22 6 6.4722 3.8781 -3.4691 23 6 6.4099 5.2385 -3.7540 24 6 7.3344 5.8144 -4.6009 25 6 8.3353 5.0386 -5.1615 26 9 9.2435 5.6008 -5.9886 27 6 8.4038 3.6876 -4.8738 28 6 7.4744 3.1051 -4.0279 29 6 7.5852 1.6304 -3.7346 30 6 5.6400 -2.2999 0.0416 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.5334 -2.7640 -2.1143 34 1 4.4541 -4.1545 -1.3932 35 1 4.5384 -0.4962 -2.0089 36 1 4.9075 1.6850 -1.5807 37 1 6.6012 2.1705 -1.3121 38 1 5.6327 5.8454 -3.3136 39 1 7.2803 6.8698 -4.8231 40 1 9.1852 3.0838 -5.3113 41 1 7.8179 1.0942 -4.6547 42 1 8.3800 1.4639 -3.0076 43 1 6.1657 -3.1662 0.4433 44 1 5.9626 -1.3613 0.4922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022431529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = -75.442189 kcal Electronic energy + Delta-G solvation = -29035.790404 eV Core-core repulsion = 24868.030857 eV Total energy + Delta-G solvation = -4167.759547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.87597 -42.19232 -41.09835 -39.51206 -38.39980 -35.59533 -35.38708 -34.22182 -32.56936 -31.76987 -31.00633 -27.06876 -26.70857 -26.42873 -25.66606 -23.96747 -23.83879 -22.15350 -20.98566 -20.51835 -19.51543 -19.08745 -18.82194 -18.13868 -17.85578 -17.02339 -16.69979 -16.59446 -16.49403 -16.13696 -16.07939 -15.78445 -15.52789 -15.38852 -14.87580 -14.76609 -14.56483 -14.34341 -14.28711 -14.02456 -13.89495 -13.62049 -13.34071 -13.23920 -12.83946 -12.56552 -12.43575 -12.27635 -12.13378 -11.94925 -11.93230 -11.81116 -11.76505 -11.11083 -10.98636 -10.87093 -10.09115 -10.02559 -9.30131 -9.19280 -8.01727 -5.36540 0.04843 0.09844 1.33017 1.38187 1.38654 1.46562 1.93630 2.12059 2.45484 2.46661 3.13807 3.26761 3.28956 3.38094 3.45600 3.55041 3.64629 3.71343 3.75419 3.87037 3.97077 4.03529 4.16183 4.23025 4.23643 4.31913 4.34210 4.51950 4.73369 4.76839 4.82879 4.89055 4.92077 4.95518 5.03301 5.03811 5.08441 5.19235 5.23121 5.32611 5.57421 5.62426 5.82972 6.21017 6.22624 6.42148 7.04591 7.07452 7.82462 8.00653 9.19418 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.003636 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.171020 B = 7698.703082 C = 9436.860702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.057 4.057 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.303 1.303 6 H -0.251 1.251 7 C -0.226 4.226 8 H 0.060 0.940 9 N -0.734 5.734 10 C 0.145 3.855 11 H 0.056 0.944 12 C -0.163 4.163 13 C 0.124 3.876 14 H 0.103 0.897 15 N -0.705 5.705 16 C 0.529 3.471 17 O -0.560 6.560 18 C -0.144 4.144 19 H 0.121 0.879 20 C 0.066 3.934 21 O -0.317 6.317 22 C 0.100 3.900 23 C -0.122 4.122 24 C -0.114 4.114 25 C 0.056 3.944 26 F -0.145 7.145 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.052 4.052 30 C -0.147 4.147 31 H 0.257 0.743 32 H 0.364 0.636 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.405 0.595 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.542 6.422 -8.731 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.249 4.249 3 Si 0.756 3.244 4 H -0.184 1.184 5 H -0.230 1.230 6 H -0.175 1.175 7 C -0.357 4.357 8 H 0.078 0.922 9 N -0.378 5.378 10 C 0.036 3.964 11 H 0.074 0.926 12 C -0.203 4.203 13 C 0.019 3.981 14 H 0.121 0.879 15 N -0.356 5.356 16 C 0.315 3.685 17 O -0.439 6.439 18 C -0.165 4.165 19 H 0.139 0.861 20 C -0.009 4.009 21 O -0.231 6.231 22 C 0.055 3.945 23 C -0.140 4.140 24 C -0.133 4.133 25 C 0.036 3.964 26 F -0.124 7.124 27 C -0.135 4.135 28 C -0.132 4.132 29 C -0.089 4.089 30 C -0.185 4.185 31 H 0.066 0.934 32 H 0.198 0.802 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.242 0.758 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.949 6.047 -8.719 21.717 hybrid contribution -0.528 1.094 0.057 1.216 sum 18.421 7.140 -8.662 21.572 Atomic orbital electron populations 1.69863 1.07142 1.26549 1.59558 1.25405 0.95913 1.00779 1.02788 0.85848 0.78953 0.80369 0.79228 1.18400 1.22984 1.17540 1.18952 0.82288 0.93404 1.41059 0.92184 1.42512 1.02359 1.03217 1.89749 1.21458 0.91514 0.87675 0.95734 0.92649 1.23920 0.96073 1.00632 0.99718 1.21862 0.99063 0.82774 0.94358 0.87885 1.46047 1.12789 1.17808 1.58991 1.20288 0.83940 0.87129 0.77124 1.90671 1.25642 1.69046 1.58542 1.21999 1.01937 0.92211 1.00363 0.86077 1.23031 1.03137 0.80833 0.93929 1.86085 1.42253 1.35244 1.59506 1.19086 0.89959 0.92984 0.92500 1.20687 1.01246 0.91502 1.00566 1.21169 0.93387 1.01791 0.96931 1.17653 0.91043 0.92131 0.95533 1.91482 1.65550 1.85402 1.69935 1.21003 1.00112 0.93567 0.98804 1.19688 0.96952 0.96190 1.00417 1.20278 0.95521 0.89772 1.03348 1.23709 0.95540 1.03466 0.95831 0.93412 0.80225 0.92467 0.86734 0.75767 0.88092 0.89649 0.82777 0.81661 0.82762 0.87950 0.88891 0.85881 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.21 13.97 21.65 0.30 -59.91 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 3 Si 0.93 41.51 26.77 68.60 1.84 43.34 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 7 C -0.23 -11.83 10.47 84.03 0.88 -10.95 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.73 -30.26 4.16 -320.44 -1.33 -31.59 16 10 C 0.14 4.76 4.53 45.52 0.21 4.97 16 11 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 12 C -0.16 -4.60 7.62 31.12 0.24 -4.36 16 13 C 0.12 3.30 4.29 45.52 0.20 3.49 16 14 H 0.10 2.62 7.53 -2.39 -0.02 2.60 16 15 N -0.71 -19.59 4.86 -440.05 -2.14 -21.73 16 16 C 0.53 14.15 7.15 87.66 0.63 14.78 16 17 O -0.56 -17.28 15.42 -3.04 -0.05 -17.33 16 18 C -0.14 -3.31 2.76 -11.38 -0.03 -3.34 16 19 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 20 C 0.07 1.64 6.26 72.12 0.45 2.09 16 21 O -0.32 -8.36 10.27 -92.45 -0.95 -9.31 16 22 C 0.10 2.29 6.47 22.51 0.15 2.44 16 23 C -0.12 -2.34 9.93 22.42 0.22 -2.12 16 24 C -0.11 -1.92 10.02 22.27 0.22 -1.70 16 25 C 0.06 1.05 7.30 22.34 0.16 1.22 16 26 F -0.14 -2.88 17.27 44.97 0.78 -2.11 16 27 C -0.12 -2.16 9.64 22.35 0.22 -1.94 16 28 C -0.13 -2.73 5.75 -19.75 -0.11 -2.85 16 29 C -0.05 -1.07 4.66 29.89 0.14 -0.93 16 30 C -0.15 -3.79 7.57 31.12 0.24 -3.55 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.36 14.31 4.93 -92.71 -0.46 13.85 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.41 12.19 6.66 -92.71 -0.62 11.58 16 36 H 0.10 2.72 6.56 -2.39 -0.02 2.70 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.09 1.97 7.69 -2.39 -0.02 1.95 16 43 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 Total: -1.00 -65.72 362.42 2.63 -63.09 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.08 Total: 40.98 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.26 Total: -5.43 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.17 Total: -113.23 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -1.00 Total: -26.64 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.84 Total: 43.34 kcal Total: -65.72 2.63 -63.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022431529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.351 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds