Wall clock time and date at job start Tue Mar 31 2020 18:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48503 * 109.47051 * 239.99539 * 3 2 1 5 5 H 1.48491 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47092 * 119.99974 * 3 2 1 7 7 C 1.38815 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99648 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.85321 * 336.19367 * 10 9 7 12 12 C 1.53779 * 113.61761 * 107.50244 * 10 9 7 13 13 C 1.53782 * 87.08115 * 139.97855 * 12 10 9 14 14 H 1.08998 * 113.68764 * 89.13374 * 13 12 10 15 15 N 1.46495 * 113.61329 * 220.02000 * 13 12 10 16 16 C 1.34779 * 120.00166 * 252.50117 * 15 13 12 17 17 O 1.21284 * 119.99882 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00050 * 180.02562 * 16 15 13 19 19 H 1.08991 * 109.70882 * 304.44953 * 18 16 15 20 20 C 1.53404 * 109.68515 * 64.99901 * 18 16 15 21 21 C 1.53068 * 108.33256 * 184.46089 * 20 18 16 22 22 C 1.50785 * 109.68900 * 311.76801 * 21 20 18 23 23 C 1.38513 * 118.74395 * 197.79315 * 22 21 20 24 24 C 1.38062 * 120.35237 * 180.12796 * 23 22 21 25 25 C 1.38525 * 119.95747 * 0.04384 * 24 23 22 26 26 F 1.35095 * 120.04769 * 179.97438 * 25 24 23 27 27 C 1.38183 * 119.90103 * 359.93318 * 25 24 23 28 28 C 1.38404 * 121.38663 * 17.81741 * 22 21 20 29 29 O 1.35845 * 121.80249 * 359.49285 * 28 22 21 30 30 C 1.53776 * 87.08109 * 334.56936 * 13 12 10 31 31 H 0.96995 * 119.99675 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00212 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61325 * 25.43301 * 12 10 9 34 34 H 1.08998 * 113.61625 * 254.53346 * 12 10 9 35 35 H 0.96999 * 120.00269 * 72.49895 * 15 13 12 36 36 H 1.09002 * 109.70115 * 64.73596 * 20 18 16 37 37 H 1.09000 * 109.69558 * 304.17876 * 20 18 16 38 38 H 1.08999 * 109.43836 * 71.83748 * 21 20 18 39 39 H 1.08997 * 109.43593 * 191.70550 * 21 20 18 40 40 H 1.08003 * 119.82821 * 0.14621 * 23 22 21 41 41 H 1.07995 * 120.02430 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.90048 * 179.97438 * 27 25 24 43 43 H 1.09002 * 113.61153 * 139.97966 * 30 13 12 44 44 H 1.08997 * 113.61791 * 270.79695 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 3.0655 -3.5640 -0.4060 12 6 1.9990 -4.4023 1.3432 13 6 1.8478 -5.6977 0.5284 14 1 2.7976 -6.1647 0.2682 15 7 0.8873 -6.6432 1.1024 16 6 1.3249 -7.7707 1.6972 17 8 2.5138 -8.0027 1.7569 18 6 0.3368 -8.7437 2.2872 19 1 -0.3000 -8.2298 3.0072 20 6 -0.5263 -9.3448 1.1704 21 6 -1.5892 -10.2399 1.8123 22 6 -0.9409 -11.1570 2.8184 23 6 -1.6319 -12.2824 3.2362 24 6 -1.0708 -13.1433 4.1582 25 6 0.1895 -12.8824 4.6707 26 9 0.7400 -13.7233 5.5734 27 6 0.8829 -11.7612 4.2566 28 6 0.3198 -10.8943 3.3257 29 8 1.0361 -9.8078 2.9363 30 6 1.2600 -4.8288 -0.5960 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.1207 -4.1571 1.9404 34 1 2.9270 -4.3503 1.9125 35 1 -0.0636 -6.4579 1.0544 36 1 0.0983 -9.9374 0.5019 37 1 -1.0096 -8.5452 0.6090 38 1 -2.3319 -9.6191 2.3132 39 1 -2.0763 -10.8353 1.0401 40 1 -2.6148 -12.4877 2.8384 41 1 -1.6141 -14.0194 4.4799 42 1 1.8653 -11.5576 4.6564 43 1 1.5916 -5.1212 -1.5924 44 1 0.1795 -4.7014 -0.5300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022432580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:56 Heat of formation + Delta-G solvation = -63.326059 kcal Electronic energy + Delta-G solvation = -27482.071797 eV Core-core repulsion = 23314.837645 eV Total energy + Delta-G solvation = -4167.234152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.26649 -41.35631 -39.81460 -38.23521 -37.32496 -34.90482 -34.10708 -32.81738 -31.05272 -30.70492 -29.82917 -26.91008 -25.19922 -24.48183 -24.28232 -23.21230 -22.50808 -21.01697 -20.38251 -19.41514 -18.72954 -17.80566 -17.21592 -17.13866 -16.39664 -16.29720 -15.98583 -15.91165 -15.30183 -15.02859 -14.88605 -14.64064 -14.40017 -14.20615 -14.03186 -13.58958 -13.46159 -13.38122 -13.08322 -12.91393 -12.29862 -12.21805 -11.99183 -11.86097 -11.61029 -11.52286 -11.31501 -11.04614 -10.95723 -10.68309 -10.56463 -10.39837 -10.12047 -9.80297 -9.63095 -9.18857 -8.97325 -8.87470 -8.63107 -7.03706 -5.84476 -3.13532 0.66983 0.84057 2.25407 2.42711 3.08172 3.34554 3.40671 3.45395 3.46188 3.96722 4.03931 4.18897 4.19811 4.35104 4.51706 4.55007 4.58511 4.70379 4.76207 4.96667 4.99072 5.02248 5.15125 5.25564 5.29520 5.30988 5.42057 5.49708 5.58394 5.64187 5.75468 5.79984 5.86022 5.92128 6.03887 6.18079 6.23411 6.26904 6.38374 6.55440 6.64813 6.90271 7.00313 7.43947 7.64657 8.09305 8.34013 9.45471 10.01311 10.35835 11.37753 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.001833 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.126474 B =15270.313388 C =15563.756269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.709 5.709 10 C 0.169 3.831 11 H 0.081 0.919 12 C -0.177 4.177 13 C 0.119 3.881 14 H 0.111 0.889 15 N -0.707 5.707 16 C 0.520 3.480 17 O -0.519 6.519 18 C 0.074 3.926 19 H 0.102 0.898 20 C -0.150 4.150 21 C -0.075 4.075 22 C -0.174 4.174 23 C -0.054 4.054 24 C -0.187 4.187 25 C 0.132 3.868 26 F -0.135 7.135 27 C -0.184 4.184 28 C 0.167 3.833 29 O -0.283 6.283 30 C -0.158 4.158 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 -26.510 4.829 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.056 3.944 11 H 0.099 0.901 12 C -0.219 4.219 13 C 0.015 3.985 14 H 0.129 0.871 15 N -0.359 5.359 16 C 0.304 3.696 17 O -0.394 6.394 18 C 0.014 3.986 19 H 0.120 0.880 20 C -0.188 4.188 21 C -0.112 4.112 22 C -0.175 4.175 23 C -0.072 4.072 24 C -0.206 4.206 25 C 0.113 3.887 26 F -0.113 7.113 27 C -0.203 4.203 28 C 0.120 3.880 29 O -0.196 6.196 30 C -0.198 4.198 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.235 0.765 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.086 0.914 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.604 -26.466 4.903 27.494 hybrid contribution -0.455 0.830 0.254 0.980 sum -6.059 -25.636 5.157 26.842 Atomic orbital electron populations 1.69644 1.05149 1.25938 1.57364 1.24771 0.95555 0.97846 1.02661 0.86243 0.78539 0.83323 0.77936 1.21168 1.21677 1.21183 1.19274 0.91145 0.84133 1.43150 0.91003 1.42338 1.05659 0.99738 1.86996 1.21341 0.95544 0.84936 0.92557 0.90132 1.24359 1.02006 0.94918 1.00630 1.22574 0.93121 0.87205 0.95648 0.87108 1.45912 1.10782 1.20848 1.58316 1.19831 0.89042 0.81892 0.78870 1.90750 1.16597 1.75372 1.56644 1.22370 0.93064 0.87501 0.95677 0.88048 1.22241 0.98036 1.01047 0.97507 1.20499 0.97293 0.96615 0.96782 1.19915 0.95430 0.99565 1.02552 1.20728 0.99314 0.92136 0.95031 1.21017 0.95152 1.02774 1.01609 1.17232 0.92442 0.88885 0.90183 1.91520 1.85562 1.69507 1.64737 1.20445 1.03201 0.95756 1.00922 1.18326 0.90099 0.87285 0.92258 1.86105 1.35412 1.25326 1.72734 1.23875 1.01250 0.97237 0.97415 0.93382 0.78093 0.90111 0.92100 0.76504 0.89471 0.88580 0.89656 0.89131 0.84555 0.84498 0.83687 0.91363 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -16.92 5.40 -52.63 -0.28 -17.20 16 10 C 0.17 3.14 4.48 -67.12 -0.30 2.84 16 11 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 12 C -0.18 -2.94 7.68 -25.92 -0.20 -3.14 16 13 C 0.12 1.65 4.24 -67.12 -0.28 1.37 16 14 H 0.11 1.65 7.46 -51.93 -0.39 1.26 16 15 N -0.71 -8.07 5.28 -53.02 -0.28 -8.35 16 16 C 0.52 6.73 7.20 -10.98 -0.08 6.65 16 17 O -0.52 -9.11 16.12 -14.18 -0.23 -9.34 16 18 C 0.07 0.72 3.22 -27.67 -0.09 0.64 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.15 -1.04 5.45 -26.49 -0.14 -1.18 16 21 C -0.08 -0.42 5.86 -27.81 -0.16 -0.58 16 22 C -0.17 -1.38 5.75 -104.42 -0.60 -1.98 16 23 C -0.05 -0.35 9.66 -39.54 -0.38 -0.74 16 24 C -0.19 -1.38 10.03 -39.54 -0.40 -1.77 16 25 C 0.13 1.23 7.30 -39.50 -0.29 0.95 16 26 F -0.13 -1.34 17.27 2.25 0.04 -1.31 16 27 C -0.18 -1.89 9.91 -39.28 -0.39 -2.28 16 28 C 0.17 1.74 6.47 -39.20 -0.25 1.49 16 29 O -0.28 -3.50 9.47 -38.99 -0.37 -3.87 16 30 C -0.16 -2.29 7.58 -25.92 -0.20 -2.48 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.39 9.64 7.92 -40.82 -0.32 9.32 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.43 8.48 -40.82 -0.35 3.08 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.47 7.85 -51.93 -0.41 0.06 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -33.12 372.99 -9.89 -43.02 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.08 Total: 8.59 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.01 Total: -7.46 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.16 Total: -52.17 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.60 Total: -13.21 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.12 -9.89 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022432580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.310 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds