Wall clock time and date at job start Tue Mar 31 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48503 * 109.47051 * 239.99539 * 3 2 1 5 5 H 1.48491 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47092 * 119.99974 * 3 2 1 7 7 C 1.38815 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99648 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.85321 * 336.19367 * 10 9 7 12 12 C 1.53779 * 113.61761 * 107.50244 * 10 9 7 13 13 C 1.53782 * 87.08115 * 139.97855 * 12 10 9 14 14 H 1.08998 * 113.68764 * 89.13374 * 13 12 10 15 15 N 1.46495 * 113.61329 * 220.02000 * 13 12 10 16 16 C 1.34779 * 120.00166 * 252.50117 * 15 13 12 17 17 O 1.21284 * 119.99882 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00050 * 180.02562 * 16 15 13 19 19 H 1.08991 * 109.70882 * 304.44953 * 18 16 15 20 20 C 1.53404 * 109.68515 * 64.99901 * 18 16 15 21 21 C 1.53068 * 108.33256 * 184.46089 * 20 18 16 22 22 C 1.50785 * 109.68900 * 311.76801 * 21 20 18 23 23 C 1.38513 * 118.74395 * 197.79315 * 22 21 20 24 24 C 1.38062 * 120.35237 * 180.12796 * 23 22 21 25 25 C 1.38525 * 119.95747 * 0.04384 * 24 23 22 26 26 F 1.35095 * 120.04769 * 179.97438 * 25 24 23 27 27 C 1.38183 * 119.90103 * 359.93318 * 25 24 23 28 28 C 1.38404 * 121.38663 * 17.81741 * 22 21 20 29 29 O 1.35845 * 121.80249 * 359.49285 * 28 22 21 30 30 C 1.53776 * 87.08109 * 334.56936 * 13 12 10 31 31 H 0.96995 * 119.99675 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00212 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61325 * 25.43301 * 12 10 9 34 34 H 1.08998 * 113.61625 * 254.53346 * 12 10 9 35 35 H 0.96999 * 120.00269 * 72.49895 * 15 13 12 36 36 H 1.09002 * 109.70115 * 64.73596 * 20 18 16 37 37 H 1.09000 * 109.69558 * 304.17876 * 20 18 16 38 38 H 1.08999 * 109.43836 * 71.83748 * 21 20 18 39 39 H 1.08997 * 109.43593 * 191.70550 * 21 20 18 40 40 H 1.08003 * 119.82821 * 0.14621 * 23 22 21 41 41 H 1.07995 * 120.02430 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.90048 * 179.97438 * 27 25 24 43 43 H 1.09002 * 113.61153 * 139.97966 * 30 13 12 44 44 H 1.08997 * 113.61791 * 270.79695 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 3.0655 -3.5640 -0.4060 12 6 1.9990 -4.4023 1.3432 13 6 1.8478 -5.6977 0.5284 14 1 2.7976 -6.1647 0.2682 15 7 0.8873 -6.6432 1.1024 16 6 1.3249 -7.7707 1.6972 17 8 2.5138 -8.0027 1.7569 18 6 0.3368 -8.7437 2.2872 19 1 -0.3000 -8.2298 3.0072 20 6 -0.5263 -9.3448 1.1704 21 6 -1.5892 -10.2399 1.8123 22 6 -0.9409 -11.1570 2.8184 23 6 -1.6319 -12.2824 3.2362 24 6 -1.0708 -13.1433 4.1582 25 6 0.1895 -12.8824 4.6707 26 9 0.7400 -13.7233 5.5734 27 6 0.8829 -11.7612 4.2566 28 6 0.3198 -10.8943 3.3257 29 8 1.0361 -9.8078 2.9363 30 6 1.2600 -4.8288 -0.5960 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.1207 -4.1571 1.9404 34 1 2.9270 -4.3503 1.9125 35 1 -0.0636 -6.4579 1.0544 36 1 0.0983 -9.9374 0.5019 37 1 -1.0096 -8.5452 0.6090 38 1 -2.3319 -9.6191 2.3132 39 1 -2.0763 -10.8353 1.0401 40 1 -2.6148 -12.4877 2.8384 41 1 -1.6141 -14.0194 4.4799 42 1 1.8653 -11.5576 4.6564 43 1 1.5916 -5.1212 -1.5924 44 1 0.1795 -4.7014 -0.5300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022432580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:55 Heat of formation + Delta-G solvation = -84.016122 kcal Electronic energy + Delta-G solvation = -27482.968985 eV Core-core repulsion = 23314.837645 eV Total energy + Delta-G solvation = -4168.131341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98793 -42.10469 -40.87904 -39.39849 -38.16992 -35.86856 -35.41411 -34.22437 -32.07363 -31.52256 -31.18488 -27.69613 -26.53753 -26.20094 -24.90839 -23.90506 -23.82140 -21.98464 -21.24232 -20.70704 -19.45945 -19.21120 -18.56563 -17.97163 -17.49059 -17.05205 -16.87197 -16.66414 -16.36076 -16.18074 -15.91834 -15.70222 -15.65032 -15.14104 -14.93699 -14.61633 -14.56475 -14.31293 -14.05884 -13.90461 -13.60452 -13.29328 -13.15381 -12.94195 -12.79958 -12.41289 -12.28594 -12.27085 -12.14907 -12.05514 -12.04457 -11.77125 -11.66414 -11.50566 -10.87922 -10.78489 -10.07122 -9.82214 -9.27157 -8.97674 -7.94805 -5.22283 0.04455 0.21144 1.38640 1.46749 1.49109 1.50700 1.56719 2.40286 2.54096 2.59085 3.33207 3.36685 3.44752 3.46928 3.63840 3.68776 3.75840 3.81641 3.89741 3.97630 3.99941 4.11177 4.19827 4.27839 4.32128 4.43413 4.50818 4.71702 4.80053 4.89987 4.91885 4.93090 4.98742 5.04743 5.10855 5.12531 5.16422 5.17104 5.33607 5.35725 5.50837 5.63770 5.69054 6.22555 6.27940 6.49364 7.12187 7.34899 8.10575 8.34148 9.27805 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.001833 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.126474 B =15270.313388 C =15563.756269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.148 3.852 11 H 0.077 0.923 12 C -0.172 4.172 13 C 0.137 3.863 14 H 0.104 0.896 15 N -0.692 5.692 16 C 0.519 3.481 17 O -0.573 6.573 18 C 0.074 3.926 19 H 0.124 0.876 20 C -0.145 4.145 21 C -0.072 4.072 22 C -0.170 4.170 23 C -0.046 4.046 24 C -0.180 4.180 25 C 0.113 3.887 26 F -0.144 7.144 27 C -0.206 4.206 28 C 0.141 3.859 29 O -0.318 6.318 30 C -0.135 4.135 31 H 0.251 0.749 32 H 0.377 0.623 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.418 0.582 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.176 0.824 41 H 0.161 0.839 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -27.801 4.004 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.038 3.962 11 H 0.095 0.905 12 C -0.214 4.214 13 C 0.031 3.969 14 H 0.122 0.878 15 N -0.344 5.344 16 C 0.305 3.695 17 O -0.451 6.451 18 C 0.015 3.985 19 H 0.142 0.858 20 C -0.183 4.183 21 C -0.108 4.108 22 C -0.171 4.171 23 C -0.064 4.064 24 C -0.199 4.199 25 C 0.094 3.906 26 F -0.123 7.123 27 C -0.226 4.226 28 C 0.096 3.904 29 O -0.232 6.232 30 C -0.175 4.175 31 H 0.060 0.940 32 H 0.210 0.790 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.148 0.852 43 H 0.103 0.897 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.920 -27.802 4.077 29.194 hybrid contribution 0.312 1.136 0.542 1.297 sum -7.609 -26.665 4.619 28.112 Atomic orbital electron populations 1.69779 1.06373 1.26114 1.59374 1.25509 0.96406 1.00903 1.03753 0.85273 0.77263 0.79522 0.78069 1.20421 1.22153 1.20792 1.19647 0.91516 0.85480 1.41190 0.90793 1.42462 1.05400 1.00648 1.87448 1.21662 0.95808 0.84282 0.94459 0.90541 1.24202 1.01291 0.96336 0.99589 1.22173 0.93534 0.86647 0.94504 0.87799 1.45690 1.11337 1.19924 1.57473 1.20457 0.88913 0.82204 0.77921 1.90727 1.19081 1.76574 1.58717 1.22483 0.92170 0.86791 0.97098 0.85840 1.22281 0.97786 1.01853 0.96364 1.20633 0.96886 0.96454 0.96826 1.20287 0.94262 1.00287 1.02306 1.21171 1.00455 0.90826 0.93925 1.21370 0.94053 1.03514 1.00965 1.17452 0.93500 0.88838 0.90817 1.91489 1.85915 1.69716 1.65190 1.20504 1.03172 0.96890 1.02007 1.18527 0.91451 0.87110 0.93310 1.86039 1.37173 1.26395 1.73563 1.23657 1.01305 0.94374 0.98124 0.93997 0.79040 0.90638 0.93165 0.74365 0.90904 0.85915 0.87361 0.86546 0.80693 0.82169 0.85195 0.89744 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.31 9.97 84.03 0.84 -12.47 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -34.38 5.40 -320.43 -1.73 -36.11 16 10 C 0.15 5.43 4.48 45.52 0.20 5.64 16 11 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 12 C -0.17 -5.67 7.68 31.12 0.24 -5.43 16 13 C 0.14 3.64 4.24 45.52 0.19 3.83 16 14 H 0.10 3.02 7.46 -2.39 -0.02 3.00 16 15 N -0.69 -14.51 5.28 -440.04 -2.33 -16.83 16 16 C 0.52 13.04 7.20 87.66 0.63 13.67 16 17 O -0.57 -20.55 16.12 15.83 0.26 -20.29 16 18 C 0.07 1.34 3.22 29.98 0.10 1.44 16 19 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 20 C -0.15 -1.56 5.45 30.75 0.17 -1.39 16 21 C -0.07 -0.49 5.86 29.90 0.18 -0.31 16 22 C -0.17 -2.25 5.75 -19.73 -0.11 -2.36 16 23 C -0.05 -0.43 9.66 22.29 0.22 -0.22 16 24 C -0.18 -2.25 10.03 22.30 0.22 -2.02 16 25 C 0.11 2.12 7.30 22.33 0.16 2.28 16 26 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 27 C -0.21 -4.48 9.91 22.47 0.22 -4.26 16 28 C 0.14 2.93 6.47 22.52 0.15 3.07 16 29 O -0.32 -8.00 9.47 -72.94 -0.69 -8.69 16 30 C -0.14 -3.64 7.58 31.12 0.24 -3.41 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.38 18.90 7.92 -92.71 -0.73 18.17 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.42 5.86 8.48 -92.71 -0.79 5.08 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.65 7.85 -2.39 -0.02 0.63 16 38 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 Total: -1.00 -74.95 372.99 2.22 -72.73 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.48 Total: 26.48 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.10 Total: -5.59 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.77 Total: -109.79 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.44 Total: -28.98 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.95 2.22 -72.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022432580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.286 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds