Wall clock time and date at job start Tue Mar 31 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38811 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99662 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99901 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99845 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84956 * 334.66602 * 10 9 7 12 12 C 1.53773 * 113.61511 * 105.86272 * 10 9 7 13 13 C 1.54049 * 86.98826 * 89.16244 * 12 10 9 14 14 H 1.09004 * 113.61848 * 139.97649 * 13 12 10 15 15 N 1.46499 * 113.68924 * 270.87275 * 13 12 10 16 16 C 1.34772 * 120.00166 * 252.52621 * 15 13 12 17 17 O 1.21286 * 119.99964 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99942 * 180.02562 * 16 15 13 19 19 H 1.08998 * 109.67879 * 55.00156 * 18 16 15 20 20 C 1.53411 * 109.68043 * 294.47691 * 18 16 15 21 21 C 1.53053 * 108.30105 * 175.60337 * 20 18 16 22 22 C 1.50778 * 109.71394 * 48.16200 * 21 20 18 23 23 C 1.38521 * 118.73767 * 162.42976 * 22 21 20 24 24 C 1.38059 * 120.35543 * 179.56954 * 23 22 21 25 25 C 1.38529 * 119.95266 * 0.02637 * 24 23 22 26 26 F 1.35095 * 120.04912 * 180.09816 * 25 24 23 27 27 C 1.38184 * 119.90193 * 0.08466 * 25 24 23 28 28 C 1.38393 * 121.39154 * 342.16298 * 22 21 20 29 29 O 1.35841 * 121.80257 * 0.54344 * 28 22 21 30 30 C 1.53784 * 87.07661 * 25.43083 * 13 12 10 31 31 H 0.96993 * 120.00251 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00431 * 359.97438 * 9 7 2 33 33 H 1.09011 * 113.61861 * 203.66526 * 12 10 9 34 34 H 1.08999 * 113.61941 * 334.56600 * 12 10 9 35 35 H 0.97006 * 119.99324 * 72.52829 * 15 13 12 36 36 H 1.08992 * 109.69992 * 295.26103 * 20 18 16 37 37 H 1.08998 * 109.69613 * 55.86330 * 20 18 16 38 38 H 1.09006 * 109.40460 * 288.10108 * 21 20 18 39 39 H 1.08995 * 109.44498 * 168.24866 * 21 20 18 40 40 H 1.08009 * 119.82599 * 359.58078 * 23 22 21 41 41 H 1.08002 * 120.02711 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.89684 * 179.97438 * 27 25 24 43 43 H 1.08997 * 113.61569 * 220.02270 * 30 13 12 44 44 H 1.09005 * 113.68993 * 89.12935 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5378 -3.2911 0.4291 12 6 4.7532 -2.8119 -1.3565 13 6 5.9928 -2.0349 -0.8741 14 1 6.9372 -2.5044 -1.1497 15 7 5.9532 -0.6058 -1.1943 16 6 6.7525 -0.1090 -2.1590 17 8 7.5043 -0.8450 -2.7623 18 6 6.7121 1.3612 -2.4879 19 1 6.8897 1.9445 -1.5845 20 6 5.3413 1.7218 -3.0747 21 6 5.2956 3.2359 -3.2939 22 6 6.5461 3.6846 -4.0068 23 6 6.5520 4.9244 -4.6246 24 6 7.6819 5.3723 -5.2793 25 6 8.8173 4.5796 -5.3207 26 9 9.9247 5.0168 -5.9591 27 6 8.8154 3.3411 -4.7078 28 6 7.6773 2.8884 -4.0484 29 8 7.7130 1.6642 -3.4608 30 6 5.5398 -2.3577 0.5596 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3619 -0.0014 33 1 4.9338 -3.8775 -1.4984 34 1 4.2501 -2.3502 -2.2061 35 1 5.3516 -0.0173 -0.7119 36 1 5.2027 1.2092 -4.0266 37 1 4.5551 1.4266 -2.3799 38 1 5.2274 3.7395 -2.3295 39 1 4.4237 3.4891 -3.8969 40 1 5.6679 5.5441 -4.5939 41 1 7.6808 6.3400 -5.7589 42 1 9.7004 2.7230 -4.7405 43 1 5.6711 -1.5296 1.2560 44 1 5.9344 -3.2991 0.9421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022432581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:59 Heat of formation + Delta-G solvation = -70.034383 kcal Electronic energy + Delta-G solvation = -28994.147112 eV Core-core repulsion = 24826.622066 eV Total energy + Delta-G solvation = -4167.525047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.00339 -42.22381 -41.12566 -39.53121 -38.22514 -35.70487 -35.47754 -34.21350 -32.57461 -31.68191 -31.32497 -27.78343 -26.56983 -26.17423 -25.01894 -24.16529 -23.87064 -22.16548 -21.25872 -20.87913 -19.59529 -19.35804 -18.75537 -18.04037 -17.16269 -17.11515 -16.91706 -16.69190 -16.50871 -16.17867 -16.09159 -15.84093 -15.50274 -15.37776 -15.19053 -14.71799 -14.61933 -14.38581 -14.16469 -14.05779 -13.82917 -13.60043 -13.37199 -13.01546 -12.84756 -12.63059 -12.44345 -12.31029 -12.22216 -12.01553 -11.82063 -11.76881 -11.62335 -11.23341 -10.95184 -10.85325 -10.13843 -9.86509 -9.33044 -9.31983 -7.99185 -5.35736 -0.00134 0.16820 1.26267 1.29347 1.34213 1.45757 1.51603 2.32391 2.47120 2.52098 3.21143 3.29819 3.32019 3.33627 3.52357 3.55496 3.65285 3.71083 3.75608 3.82980 3.94297 4.02697 4.11014 4.25330 4.29688 4.34324 4.38362 4.67972 4.73978 4.83359 4.88099 4.88519 4.92738 4.97081 4.99882 5.03051 5.11837 5.19259 5.27135 5.30793 5.52574 5.63100 5.81975 6.12694 6.23622 6.31344 6.95677 7.07981 7.81144 7.99917 9.21912 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003556 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.039878 B = 7872.507231 C = 9568.436747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.231 1.231 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.055 0.945 9 N -0.728 5.728 10 C 0.148 3.852 11 H 0.068 0.932 12 C -0.178 4.178 13 C 0.120 3.880 14 H 0.102 0.898 15 N -0.695 5.695 16 C 0.524 3.476 17 O -0.559 6.559 18 C 0.076 3.924 19 H 0.126 0.874 20 C -0.158 4.158 21 C -0.077 4.077 22 C -0.170 4.170 23 C -0.047 4.047 24 C -0.176 4.176 25 C 0.118 3.882 26 F -0.140 7.140 27 C -0.198 4.198 28 C 0.141 3.859 29 O -0.308 6.308 30 C -0.141 4.141 31 H 0.257 0.743 32 H 0.361 0.639 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.318 10.018 -5.523 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.155 1.155 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.372 5.372 10 C 0.038 3.962 11 H 0.086 0.914 12 C -0.219 4.219 13 C 0.015 3.985 14 H 0.120 0.880 15 N -0.348 5.348 16 C 0.310 3.690 17 O -0.437 6.437 18 C 0.016 3.984 19 H 0.143 0.857 20 C -0.195 4.195 21 C -0.113 4.113 22 C -0.171 4.171 23 C -0.065 4.065 24 C -0.195 4.195 25 C 0.099 3.901 26 F -0.119 7.119 27 C -0.217 4.217 28 C 0.096 3.904 29 O -0.221 6.221 30 C -0.180 4.180 31 H 0.066 0.934 32 H 0.197 0.803 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.188 0.812 41 H 0.181 0.819 42 H 0.156 0.844 43 H 0.096 0.904 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.805 9.264 -5.987 20.101 hybrid contribution -0.259 0.938 -0.009 0.973 sum 16.546 10.202 -5.996 20.342 Atomic orbital electron populations 1.69903 1.07475 1.26787 1.59311 1.25629 0.96188 1.01725 1.02382 0.85561 0.79239 0.79220 0.78301 1.20586 1.15526 1.21963 1.19015 0.82354 0.93550 1.41657 0.92741 1.42435 1.02296 1.03033 1.89393 1.21457 0.91835 0.88289 0.94589 0.91377 1.24246 0.97033 1.00988 0.99681 1.22005 0.99202 0.79818 0.97454 0.88039 1.45743 1.41235 1.10249 1.37595 1.20232 0.79808 0.89430 0.79539 1.90697 1.40631 1.60991 1.51383 1.22362 0.89401 0.93559 0.93032 0.85662 1.22355 0.95135 0.98878 1.03179 1.20601 0.95407 0.93061 1.02243 1.20132 0.95006 0.96917 1.05085 1.21118 0.98729 0.93671 0.92984 1.21346 0.91814 1.02120 1.04223 1.17379 0.84028 0.93120 0.95559 1.91497 1.51534 1.89366 1.79509 1.20472 0.98978 0.97098 1.05161 1.18517 0.93334 0.84416 0.94141 1.86003 1.51369 1.30806 1.53950 1.23772 0.95346 1.04313 0.94557 0.93379 0.80336 0.87479 0.93604 0.75888 0.90691 0.88484 0.87811 0.87240 0.81225 0.81883 0.84360 0.90404 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.84 13.97 21.65 0.30 -59.53 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 38.85 27.74 68.60 1.90 40.75 16 4 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.23 -7.34 4.58 99.48 0.46 -6.89 16 6 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.23 -12.32 10.45 84.03 0.88 -11.44 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 N -0.73 -29.57 4.97 -320.45 -1.59 -31.16 16 10 C 0.15 4.86 4.55 45.52 0.21 5.07 16 11 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 12 C -0.18 -5.39 7.70 31.21 0.24 -5.15 16 13 C 0.12 3.27 4.33 45.61 0.20 3.47 16 14 H 0.10 2.76 7.46 -2.38 -0.02 2.74 16 15 N -0.69 -19.54 5.09 -439.59 -2.24 -21.78 16 16 C 0.52 16.02 7.19 87.66 0.63 16.65 16 17 O -0.56 -21.21 16.12 15.85 0.26 -20.95 16 18 C 0.08 1.93 3.21 29.99 0.10 2.02 16 19 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 20 C -0.16 -3.70 5.46 30.75 0.17 -3.54 16 21 C -0.08 -1.37 5.86 29.89 0.18 -1.19 16 22 C -0.17 -3.34 5.75 -19.74 -0.11 -3.45 16 23 C -0.05 -0.70 9.66 22.29 0.22 -0.48 16 24 C -0.18 -2.75 10.03 22.30 0.22 -2.53 16 25 C 0.12 2.43 7.30 22.33 0.16 2.60 16 26 F -0.14 -3.01 17.27 44.97 0.78 -2.23 16 27 C -0.20 -4.65 9.91 22.47 0.22 -4.43 16 28 C 0.14 3.48 6.47 22.52 0.15 3.63 16 29 O -0.31 -8.93 9.46 -72.87 -0.69 -9.62 16 30 C -0.14 -3.40 7.58 31.12 0.24 -3.16 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.36 13.30 3.24 -92.71 -0.30 13.00 16 33 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.40 10.91 5.67 -92.70 -0.53 10.38 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 2.38 6.24 -2.39 -0.01 2.36 16 38 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -71.33 360.75 2.84 -68.49 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -0.03 Total: 41.20 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.15 Total: -5.16 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.53 Total: -112.47 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.43 Total: -30.57 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.75 kcal Total: -71.33 2.84 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022432581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.547 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds