Wall clock time and date at job start Tue Mar 31 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48501 * 109.46939 * 274.89389 * 3 2 1 5 5 H 1.48502 * 109.46835 * 34.89010 * 3 2 1 6 6 H 1.48495 * 109.47308 * 154.89138 * 3 2 1 7 7 C 1.38814 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 339.75461 * 7 2 1 9 9 N 1.36937 * 120.00035 * 159.75527 * 7 2 1 10 10 C 1.46932 * 120.63126 * 332.79739 * 9 7 2 11 11 C 1.53185 * 108.77704 * 233.59023 * 10 9 7 12 12 C 1.53049 * 109.31207 * 305.36262 * 11 10 9 13 13 C 1.53039 * 109.53483 * 61.36887 * 12 11 10 14 14 H 1.08995 * 109.50256 * 58.61948 * 13 12 11 15 15 C 1.53001 * 109.49606 * 178.68552 * 13 12 11 16 16 N 1.46501 * 109.47172 * 184.99889 * 15 13 12 17 17 C 1.34778 * 119.99901 * 179.97438 * 16 15 13 18 18 O 1.21700 * 119.99945 * 0.02562 * 17 16 15 19 19 C 1.46580 * 119.99896 * 179.97438 * 17 16 15 20 20 C 1.35871 * 125.41722 * 179.97438 * 19 17 16 21 21 C 1.39173 * 113.99995 * 180.02562 * 20 19 17 22 22 C 1.34370 * 113.99586 * 0.02562 * 21 20 19 23 23 S 1.71478 * 111.07863 * 359.97438 * 22 21 20 24 24 C 1.52369 * 110.38105 * 179.97438 * 22 21 20 25 25 C 1.54163 * 104.90674 * 342.45829 * 24 22 21 26 26 C 1.52815 * 136.18782 * 180.02562 * 21 20 19 27 27 C 1.46922 * 120.63343 * 152.77743 * 9 7 2 28 28 H 0.96998 * 119.99538 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58667 * 113.79784 * 10 9 7 30 30 H 1.08999 * 109.58485 * 353.38007 * 10 9 7 31 31 H 1.08997 * 109.49925 * 185.41251 * 11 10 9 32 32 H 1.08995 * 109.52883 * 65.32893 * 11 10 9 33 33 H 1.08995 * 109.46102 * 301.34586 * 12 11 10 34 34 H 1.09003 * 109.44675 * 181.38011 * 12 11 10 35 35 H 1.08998 * 109.47386 * 64.99365 * 15 13 12 36 36 H 1.09003 * 109.46505 * 304.99615 * 15 13 12 37 37 H 0.96995 * 120.00047 * 359.97438 * 16 15 13 38 38 H 1.07994 * 122.99812 * 0.02804 * 20 19 17 39 39 H 1.09000 * 110.35395 * 223.59706 * 24 22 21 40 40 H 1.09007 * 110.44399 * 101.36487 * 24 22 21 41 41 H 1.08996 * 110.95768 * 268.58806 * 25 24 22 42 42 H 1.09005 * 110.95761 * 144.84880 * 25 24 22 43 43 H 1.08993 * 110.33361 * 316.49543 * 26 21 20 44 44 H 1.09001 * 110.33325 * 78.62392 * 26 21 20 45 45 H 1.09003 * 109.58619 * 6.62545 * 27 9 7 46 46 H 1.08994 * 109.58902 * 246.20067 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3943 2.1061 -1.3950 5 1 1.5032 2.6206 0.8009 6 1 3.5956 1.4126 0.5941 7 6 2.0103 -1.2022 0.0005 8 1 1.5204 -2.1084 0.3246 9 7 3.3162 -1.2389 -0.4098 10 6 3.8269 -0.2523 -1.3714 11 6 4.4784 -0.9957 -2.5416 12 6 5.5410 -1.9562 -2.0024 13 6 4.8805 -2.9864 -1.0834 14 1 4.1174 -3.5324 -1.6380 15 6 5.9383 -3.9659 -0.5709 16 7 5.2889 -5.0207 0.2113 17 6 6.0290 -6.0016 0.7650 18 8 7.2368 -6.0108 0.6156 19 6 5.3793 -7.0567 1.5481 20 6 6.0157 -8.0941 2.1522 21 6 5.1658 -8.9593 2.8349 22 6 3.8690 -8.6130 2.7733 23 16 3.6559 -7.1814 1.8537 24 6 3.0157 -9.6124 3.5446 25 6 3.9125 -10.8554 3.7096 26 6 5.3225 -10.2359 3.6601 27 6 4.2335 -2.2655 0.1034 28 1 -0.4849 0.8401 -0.0004 29 1 4.5668 0.3832 -0.8848 30 1 3.0031 0.3590 -1.7400 31 1 4.9457 -0.2767 -3.2145 32 1 3.7190 -1.5600 -3.0828 33 1 6.2871 -1.3941 -1.4409 34 1 6.0231 -2.4685 -2.8351 35 1 6.6517 -3.4338 0.0583 36 1 6.4616 -4.4110 -1.4172 37 1 4.3264 -5.0132 0.3307 38 1 7.0855 -8.2348 2.1066 39 1 2.1199 -9.8638 2.9767 40 1 2.7443 -9.2084 4.5200 41 1 3.7651 -11.5546 2.8866 42 1 3.7330 -11.3410 4.6689 43 1 6.0191 -10.9184 3.1732 44 1 5.6681 -9.9969 4.6658 45 1 3.6781 -2.9826 0.7078 46 1 5.0066 -1.7943 0.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023738097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:41 Heat of formation + Delta-G solvation = 10.734137 kcal Electronic energy + Delta-G solvation = -25983.611444 eV Core-core repulsion = 22385.801959 eV Total energy + Delta-G solvation = -3597.809485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.03744 -39.34371 -38.06385 -35.06994 -34.53076 -33.06380 -31.05011 -30.78543 -28.88903 -28.43335 -26.00940 -25.28788 -23.53591 -22.13731 -21.92807 -21.37131 -20.43359 -19.45928 -18.78708 -18.00861 -16.81095 -16.30540 -15.98266 -15.78756 -15.48066 -15.29655 -14.70325 -14.37943 -13.96896 -13.88860 -13.47388 -13.25386 -13.23576 -13.05862 -12.69873 -12.59104 -12.46450 -12.25026 -12.15242 -12.01259 -11.67880 -11.54117 -11.49882 -11.16987 -11.03362 -10.84305 -10.62358 -10.55412 -10.20289 -10.08536 -9.87168 -9.68100 -9.45801 -9.12294 -8.79432 -8.64561 -8.52301 -7.00636 -5.97577 -3.33693 0.38082 1.18313 1.76728 2.13908 3.10784 3.15806 3.30712 3.47278 3.50074 4.15656 4.19417 4.50893 4.61782 4.66952 4.78792 4.93723 5.11811 5.13380 5.17653 5.20144 5.25488 5.32484 5.40091 5.40684 5.51543 5.56500 5.59931 5.68726 5.77853 5.78915 5.80807 5.99449 6.05588 6.08013 6.09877 6.15612 6.27089 6.34811 6.39439 6.53838 6.54613 6.66519 6.68613 6.94454 7.43695 7.92408 8.11759 8.29077 8.90574 9.69242 10.07021 11.18245 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.002763 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.978145 B =10130.793087 C =11498.602474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.121 4.121 14 H 0.079 0.921 15 C 0.128 3.872 16 N -0.720 5.720 17 C 0.592 3.408 18 O -0.536 6.536 19 C -0.266 4.266 20 C -0.039 4.039 21 C -0.142 4.142 22 C -0.223 4.223 23 S 0.233 5.767 24 C -0.045 4.045 25 C -0.118 4.118 26 C -0.057 4.057 27 C 0.156 3.844 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.149 0.851 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 -19.392 4.139 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.138 4.138 13 C -0.141 4.141 14 H 0.097 0.903 15 C 0.005 3.995 16 N -0.371 5.371 17 C 0.378 3.622 18 O -0.415 6.415 19 C -0.387 4.387 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.342 4.342 23 S 0.503 5.497 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.096 4.096 27 C 0.029 3.971 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.167 0.833 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.789 -18.350 3.605 20.663 hybrid contribution 1.144 0.242 0.446 1.252 sum 9.933 -18.108 4.051 21.047 Atomic orbital electron populations 1.69829 1.05718 1.26560 1.53027 1.25261 0.95221 0.97607 0.99439 0.86937 0.80127 0.84626 0.76912 1.21695 1.23222 1.19467 1.18903 0.84697 0.94738 1.40580 0.89709 1.44329 1.08397 1.32759 1.47387 1.21355 0.97157 0.92001 0.89638 1.21997 0.98060 0.98544 0.98744 1.21341 0.97744 0.96685 0.98065 1.21969 0.97017 0.95870 0.99274 0.90284 1.21494 0.95603 0.87537 0.94870 1.45945 1.11044 1.26472 1.53609 1.16866 0.86382 0.80457 0.78541 1.90812 1.13430 1.76219 1.61009 1.24272 0.97901 1.04043 1.12441 1.20163 1.01153 0.91485 0.94458 1.20370 0.92308 1.00021 1.02787 1.25714 1.00597 1.02331 1.05586 1.83137 1.02746 1.18625 1.45171 1.20882 0.97059 0.91747 0.98773 1.22285 0.94027 0.96655 1.02719 1.20981 0.97758 0.92129 0.98688 1.20933 0.92478 0.91235 0.92427 0.92766 0.95658 0.91097 0.92642 0.91694 0.92255 0.92694 0.91203 0.91464 0.76357 0.83316 0.90369 0.89646 0.90620 0.90012 0.90692 0.90231 0.92280 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.97 55.49 0.78 -26.73 16 2 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 3 Si 0.88 22.27 24.35 -169.99 -4.14 18.13 16 4 H -0.29 -7.05 6.70 56.52 0.38 -6.67 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.69 6.45 56.52 0.36 -6.32 16 7 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 8 H 0.09 2.44 8.05 -52.49 -0.42 2.02 16 9 N -0.61 -13.98 2.77 -172.32 -0.48 -14.45 16 10 C 0.12 2.65 4.19 -3.71 -0.02 2.63 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 12 C -0.10 -1.48 5.17 -26.69 -0.14 -1.62 16 13 C -0.12 -1.85 2.37 -90.50 -0.21 -2.07 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 16 N -0.72 -9.94 5.33 -61.65 -0.33 -10.27 16 17 C 0.59 8.82 7.78 -12.90 -0.10 8.72 16 18 O -0.54 -9.49 16.82 5.19 0.09 -9.40 16 19 C -0.27 -3.45 6.41 -37.07 -0.24 -3.69 16 20 C -0.04 -0.47 9.99 -40.08 -0.40 -0.87 16 21 C -0.14 -1.46 6.49 -104.58 -0.68 -2.14 16 22 C -0.22 -2.25 7.10 -34.84 -0.25 -2.49 16 23 S 0.23 2.57 22.15 -107.50 -2.38 0.19 16 24 C -0.05 -0.33 6.80 -26.45 -0.18 -0.51 16 25 C -0.12 -0.69 7.11 -25.56 -0.18 -0.87 16 26 C -0.06 -0.41 6.81 -26.26 -0.18 -0.58 16 27 C 0.16 2.93 5.60 -3.71 -0.02 2.91 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.54 6.98 -51.93 -0.36 0.18 16 30 H 0.07 1.67 4.50 -51.93 -0.23 1.44 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.40 5.19 6.81 -40.82 -0.28 4.91 16 38 H 0.15 1.70 8.04 -52.49 -0.42 1.27 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -32.37 371.74 -11.08 -43.46 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.20 Total: 1.41 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.02 Total: -7.94 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.03 Total: -51.45 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.38 Total: 0.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.37 -11.08 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023738097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.190 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds