Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48501 * 109.46939 * 274.89389 * 3 2 1 5 5 H 1.48502 * 109.46835 * 34.89010 * 3 2 1 6 6 H 1.48495 * 109.47308 * 154.89138 * 3 2 1 7 7 C 1.38814 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 339.75461 * 7 2 1 9 9 N 1.36937 * 120.00035 * 159.75527 * 7 2 1 10 10 C 1.46932 * 120.63126 * 332.79739 * 9 7 2 11 11 C 1.53185 * 108.77704 * 233.59023 * 10 9 7 12 12 C 1.53049 * 109.31207 * 305.36262 * 11 10 9 13 13 C 1.53039 * 109.53483 * 61.36887 * 12 11 10 14 14 H 1.08995 * 109.50256 * 58.61948 * 13 12 11 15 15 C 1.53001 * 109.49606 * 178.68552 * 13 12 11 16 16 N 1.46501 * 109.47172 * 184.99889 * 15 13 12 17 17 C 1.34778 * 119.99901 * 179.97438 * 16 15 13 18 18 O 1.21700 * 119.99945 * 0.02562 * 17 16 15 19 19 C 1.46580 * 119.99896 * 179.97438 * 17 16 15 20 20 C 1.35871 * 125.41722 * 179.97438 * 19 17 16 21 21 C 1.39173 * 113.99995 * 180.02562 * 20 19 17 22 22 C 1.34370 * 113.99586 * 0.02562 * 21 20 19 23 23 S 1.71478 * 111.07863 * 359.97438 * 22 21 20 24 24 C 1.52369 * 110.38105 * 179.97438 * 22 21 20 25 25 C 1.54163 * 104.90674 * 342.45829 * 24 22 21 26 26 C 1.52815 * 136.18782 * 180.02562 * 21 20 19 27 27 C 1.46922 * 120.63343 * 152.77743 * 9 7 2 28 28 H 0.96998 * 119.99538 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58667 * 113.79784 * 10 9 7 30 30 H 1.08999 * 109.58485 * 353.38007 * 10 9 7 31 31 H 1.08997 * 109.49925 * 185.41251 * 11 10 9 32 32 H 1.08995 * 109.52883 * 65.32893 * 11 10 9 33 33 H 1.08995 * 109.46102 * 301.34586 * 12 11 10 34 34 H 1.09003 * 109.44675 * 181.38011 * 12 11 10 35 35 H 1.08998 * 109.47386 * 64.99365 * 15 13 12 36 36 H 1.09003 * 109.46505 * 304.99615 * 15 13 12 37 37 H 0.96995 * 120.00047 * 359.97438 * 16 15 13 38 38 H 1.07994 * 122.99812 * 0.02804 * 20 19 17 39 39 H 1.09000 * 110.35395 * 223.59706 * 24 22 21 40 40 H 1.09007 * 110.44399 * 101.36487 * 24 22 21 41 41 H 1.08996 * 110.95768 * 268.58806 * 25 24 22 42 42 H 1.09005 * 110.95761 * 144.84880 * 25 24 22 43 43 H 1.08993 * 110.33361 * 316.49543 * 26 21 20 44 44 H 1.09001 * 110.33325 * 78.62392 * 26 21 20 45 45 H 1.09003 * 109.58619 * 6.62545 * 27 9 7 46 46 H 1.08994 * 109.58902 * 246.20067 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3943 2.1061 -1.3950 5 1 1.5032 2.6206 0.8009 6 1 3.5956 1.4126 0.5941 7 6 2.0103 -1.2022 0.0005 8 1 1.5204 -2.1084 0.3246 9 7 3.3162 -1.2389 -0.4098 10 6 3.8269 -0.2523 -1.3714 11 6 4.4784 -0.9957 -2.5416 12 6 5.5410 -1.9562 -2.0024 13 6 4.8805 -2.9864 -1.0834 14 1 4.1174 -3.5324 -1.6380 15 6 5.9383 -3.9659 -0.5709 16 7 5.2889 -5.0207 0.2113 17 6 6.0290 -6.0016 0.7650 18 8 7.2368 -6.0108 0.6156 19 6 5.3793 -7.0567 1.5481 20 6 6.0157 -8.0941 2.1522 21 6 5.1658 -8.9593 2.8349 22 6 3.8690 -8.6130 2.7733 23 16 3.6559 -7.1814 1.8537 24 6 3.0157 -9.6124 3.5446 25 6 3.9125 -10.8554 3.7096 26 6 5.3225 -10.2359 3.6601 27 6 4.2335 -2.2655 0.1034 28 1 -0.4849 0.8401 -0.0004 29 1 4.5668 0.3832 -0.8848 30 1 3.0031 0.3590 -1.7400 31 1 4.9457 -0.2767 -3.2145 32 1 3.7190 -1.5600 -3.0828 33 1 6.2871 -1.3941 -1.4409 34 1 6.0231 -2.4685 -2.8351 35 1 6.6517 -3.4338 0.0583 36 1 6.4616 -4.4110 -1.4172 37 1 4.3264 -5.0132 0.3307 38 1 7.0855 -8.2348 2.1066 39 1 2.1199 -9.8638 2.9767 40 1 2.7443 -9.2084 4.5200 41 1 3.7651 -11.5546 2.8866 42 1 3.7330 -11.3410 4.6689 43 1 6.0191 -10.9184 3.1732 44 1 5.6681 -9.9969 4.6658 45 1 3.6781 -2.9826 0.7078 46 1 5.0066 -1.7943 0.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023738097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = -8.799380 kcal Electronic energy + Delta-G solvation = -25984.458481 eV Core-core repulsion = 22385.801959 eV Total energy + Delta-G solvation = -3598.656522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.08321 -40.24282 -39.49871 -36.43570 -35.34133 -34.75252 -32.87031 -32.24662 -29.62566 -29.21846 -27.41923 -26.90819 -24.56060 -23.68709 -22.99309 -22.50456 -21.48398 -20.77249 -19.69084 -18.95553 -18.71113 -17.37999 -17.20220 -16.88165 -16.79190 -16.43835 -15.88355 -15.53033 -15.51297 -15.12416 -15.01543 -14.85502 -14.25749 -14.03509 -13.90780 -13.77031 -13.56329 -13.34462 -13.30327 -13.19690 -12.96601 -12.70688 -12.56468 -12.20571 -12.14575 -12.05049 -11.87630 -11.72619 -11.71218 -11.57574 -11.42612 -11.28767 -11.14844 -10.68183 -10.27386 -9.68081 -9.35039 -8.93538 -8.16647 -5.48066 -0.53535 0.31491 0.90713 1.25595 1.29005 1.40770 1.49196 2.02106 2.07687 2.41151 3.04982 3.29279 3.45495 3.56157 3.79184 3.84768 3.92760 3.99155 4.15938 4.18111 4.23931 4.36082 4.37238 4.50437 4.61717 4.62852 4.73226 4.75720 4.80318 4.81158 4.84987 4.90469 4.96661 4.97337 5.07396 5.09722 5.15513 5.23204 5.24939 5.27570 5.33356 5.35854 5.38303 5.55554 5.86054 6.12367 6.30975 6.91226 6.97739 7.62172 8.02932 9.02987 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.002763 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.978145 B =10130.793087 C =11498.602474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.314 1.314 6 H -0.262 1.262 7 C -0.246 4.246 8 H 0.056 0.944 9 N -0.619 5.619 10 C 0.115 3.885 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.136 3.864 16 N -0.717 5.717 17 C 0.592 3.408 18 O -0.570 6.570 19 C -0.294 4.294 20 C -0.040 4.040 21 C -0.154 4.154 22 C -0.220 4.220 23 S 0.228 5.772 24 C -0.049 4.049 25 C -0.111 4.111 26 C -0.057 4.057 27 C 0.152 3.848 28 H 0.261 0.739 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.405 0.595 38 H 0.148 0.852 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.063 -20.675 4.108 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.243 1.243 6 H -0.186 1.186 7 C -0.376 4.376 8 H 0.074 0.926 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.126 4.126 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.368 5.368 17 C 0.379 3.621 18 O -0.452 6.452 19 C -0.414 4.414 20 C -0.074 4.074 21 C -0.166 4.166 22 C -0.340 4.340 23 S 0.499 5.501 24 C -0.088 4.088 25 C -0.149 4.149 26 C -0.096 4.096 27 C 0.027 3.973 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.166 0.834 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.499 -19.643 3.555 22.554 hybrid contribution 0.601 0.514 0.504 0.938 sum 11.100 -19.128 4.060 22.485 Atomic orbital electron populations 1.69953 1.07304 1.27104 1.55909 1.25862 0.95804 1.00801 1.00472 0.85939 0.78821 0.80515 0.77307 1.20305 1.24288 1.18623 1.18887 0.86461 0.93583 1.38644 0.92596 1.44467 1.07572 1.34027 1.48302 1.21451 0.96605 0.92053 0.90846 1.21909 0.98354 0.99126 0.97204 1.21362 0.97120 0.96131 0.98921 1.21766 0.97089 0.95976 0.97773 0.90826 1.21412 0.94930 0.87192 0.95205 1.45945 1.11204 1.26283 1.53340 1.17097 0.86014 0.80702 0.78247 1.90780 1.14740 1.77169 1.62488 1.24152 0.98984 1.04425 1.13848 1.20369 1.01464 0.91457 0.94087 1.20725 0.91970 1.01038 1.02910 1.26204 1.01442 1.01726 1.04642 1.83098 1.01530 1.19757 1.45740 1.21093 0.97309 0.91570 0.98875 1.22324 0.92371 0.95955 1.04270 1.21114 0.99080 0.90761 0.98600 1.21090 0.91871 0.90397 0.93985 0.93024 0.95048 0.93566 0.89821 0.92637 0.91323 0.89590 0.91338 0.90260 0.75965 0.83406 0.89434 0.88586 0.90097 0.87690 0.89770 0.89287 0.92823 0.95298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.73 13.97 21.65 0.30 -59.43 16 2 C -0.03 -2.01 5.24 84.86 0.44 -1.57 16 3 Si 0.94 46.61 24.35 68.60 1.67 48.28 16 4 H -0.28 -12.90 6.70 99.48 0.67 -12.23 16 5 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 6 H -0.26 -12.39 6.45 99.48 0.64 -11.74 16 7 C -0.25 -13.71 10.04 84.03 0.84 -12.87 16 8 H 0.06 3.36 8.05 -2.91 -0.02 3.34 16 9 N -0.62 -28.36 2.77 -699.10 -1.94 -30.30 16 10 C 0.12 4.74 4.19 86.36 0.36 5.10 16 11 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 12 C -0.10 -2.55 5.17 30.62 0.16 -2.39 16 13 C -0.11 -3.05 2.37 -10.71 -0.03 -3.08 16 14 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 15 C 0.14 3.57 5.07 86.38 0.44 4.01 16 16 N -0.72 -19.53 5.33 -467.17 -2.49 -22.02 16 17 C 0.59 17.70 7.78 86.42 0.67 18.37 16 18 O -0.57 -20.25 16.82 -4.35 -0.07 -20.32 16 19 C -0.29 -7.66 6.41 23.90 0.15 -7.51 16 20 C -0.04 -0.94 9.99 21.94 0.22 -0.72 16 21 C -0.15 -2.98 6.49 -19.84 -0.13 -3.11 16 22 C -0.22 -4.17 7.10 25.34 0.18 -3.99 16 23 S 0.23 5.02 22.15 -56.49 -1.25 3.76 16 24 C -0.05 -0.60 6.80 30.78 0.21 -0.39 16 25 C -0.11 -0.95 7.11 31.36 0.22 -0.72 16 26 C -0.06 -0.68 6.81 30.90 0.21 -0.47 16 27 C 0.15 5.59 5.60 86.36 0.48 6.07 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.03 1.26 6.98 -2.39 -0.02 1.25 16 30 H 0.05 2.13 4.50 -2.39 -0.01 2.12 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.40 10.49 6.81 -92.71 -0.63 9.86 16 38 H 0.15 3.41 8.04 -2.91 -0.02 3.39 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 2.00 7.14 -2.39 -0.02 1.98 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.43 371.74 1.10 -70.33 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.25 Total: 16.77 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.63 Total: -7.06 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.13 Total: -111.75 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.32 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.67 Total: 48.28 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.25 Total: 3.76 kcal Total: -71.43 1.10 -70.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023738097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.526 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds