Wall clock time and date at job start Tue Mar 31 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00391 * 2 1 4 4 H 1.48498 * 109.47525 * 270.00738 * 3 2 1 5 5 H 1.48509 * 109.46893 * 30.00527 * 3 2 1 6 6 H 1.48493 * 109.47029 * 150.00152 * 3 2 1 7 7 C 1.38811 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65047 * 14.86479 * 9 7 2 11 11 C 1.54905 * 104.83552 * 155.83642 * 10 9 7 12 12 C 1.55161 * 101.57987 * 37.01214 * 11 10 9 13 13 C 1.47027 * 125.64737 * 194.82331 * 9 7 2 14 14 H 1.08993 * 109.88744 * 300.66681 * 13 9 7 15 15 C 1.53005 * 109.88087 * 61.68117 * 13 9 7 16 16 N 1.46498 * 109.47038 * 184.49481 * 15 13 9 17 17 C 1.34779 * 120.00182 * 185.10424 * 16 15 13 18 18 O 1.21286 * 119.99458 * 359.72795 * 17 16 15 19 19 C 1.50696 * 120.00127 * 179.72401 * 17 16 15 20 20 H 1.09000 * 110.66488 * 55.70049 * 19 17 16 21 21 C 1.54703 * 110.74853 * 292.48301 * 19 17 16 22 22 C 1.51946 * 101.79818 * 216.50701 * 21 19 17 23 23 C 1.37753 * 132.07078 * 195.83962 * 22 21 19 24 24 C 1.38538 * 119.95604 * 178.84778 * 23 22 21 25 25 F 1.35098 * 120.14164 * 180.02562 * 24 23 22 26 26 C 1.38473 * 119.71278 * 359.97438 * 24 23 22 27 27 C 1.37933 * 120.32467 * 0.19300 * 26 24 23 28 28 C 1.38863 * 107.11369 * 15.14346 * 22 21 19 29 29 O 1.36196 * 111.22179 * 1.24359 * 28 22 21 30 30 H 0.97002 * 119.99546 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36874 * 274.67956 * 10 9 7 32 32 H 1.09003 * 110.36685 * 36.88902 * 10 9 7 33 33 H 1.08995 * 111.00891 * 155.08614 * 11 10 9 34 34 H 1.08998 * 111.00614 * 278.89791 * 11 10 9 35 35 H 1.09004 * 110.71786 * 206.13827 * 12 11 10 36 36 H 1.08992 * 110.72044 * 82.86503 * 12 11 10 37 37 H 1.08998 * 109.47386 * 64.48917 * 15 13 9 38 38 H 1.09001 * 109.46878 * 304.49485 * 15 13 9 39 39 H 0.97000 * 119.99722 * 4.83237 * 16 15 13 40 40 H 1.08994 * 110.94153 * 334.55247 * 21 19 17 41 41 H 1.09004 * 110.93590 * 98.23404 * 21 19 17 42 42 H 1.08000 * 120.02233 * 358.87455 * 23 22 21 43 43 H 1.07995 * 119.83812 * 180.17012 * 26 24 23 44 44 H 1.08005 * 119.85989 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1070 -2.5531 -0.3073 11 6 -0.2449 -4.0224 -0.7785 12 6 0.7641 -4.7443 0.1533 13 6 1.8974 -3.7077 0.3046 14 1 2.7041 -3.9325 -0.3930 15 6 2.4300 -3.7249 1.7389 16 7 3.0928 -5.0054 1.9983 17 6 3.5510 -5.2890 3.2337 18 8 3.4190 -4.4820 4.1294 19 6 4.2272 -6.6087 3.5020 20 1 5.0676 -6.7553 2.8235 21 6 3.2181 -7.7755 3.3847 22 6 3.6947 -8.7101 4.4838 23 6 3.4330 -10.0371 4.7448 24 6 4.0333 -10.6608 5.8265 25 9 3.7798 -11.9622 6.0856 26 6 4.8951 -9.9448 6.6402 27 6 5.1543 -8.6151 6.3807 28 6 4.5507 -7.9803 5.2981 29 8 4.6576 -6.6914 4.8713 30 1 -0.4849 0.8401 0.0004 31 1 -0.7083 -2.3831 0.5858 32 1 -0.4062 -1.8688 -1.1012 33 1 -1.2580 -4.3909 -0.6174 34 1 0.0446 -4.1262 -1.8241 35 1 1.1357 -5.6564 -0.3137 36 1 0.3091 -4.9622 1.1194 37 1 1.6017 -3.5968 2.4357 38 1 3.1447 -2.9126 1.8708 39 1 3.1984 -5.6508 1.2818 40 1 2.2019 -7.4327 3.5792 41 1 3.2863 -8.2526 2.4070 42 1 2.7608 -10.5911 4.1064 43 1 5.3662 -10.4297 7.4823 44 1 5.8280 -8.0639 7.0201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028178759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:00 Heat of formation + Delta-G solvation = -57.381031 kcal Electronic energy + Delta-G solvation = -28008.960579 eV Core-core repulsion = 23841.984223 eV Total energy + Delta-G solvation = -4166.976356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.17289 -41.68407 -39.37518 -37.80166 -37.26784 -34.45237 -33.21160 -32.52713 -30.52958 -30.02499 -29.54594 -28.50640 -25.43014 -24.64423 -23.55654 -22.74295 -22.25162 -20.67508 -20.20356 -19.61229 -18.04710 -17.85838 -17.47427 -17.43206 -16.67799 -15.92263 -15.86883 -15.54457 -15.08710 -14.74217 -14.63145 -14.51728 -13.98662 -13.85611 -13.78461 -13.48134 -13.33159 -13.20968 -13.03506 -12.72889 -12.31057 -12.13262 -11.95133 -11.79170 -11.44687 -11.36259 -11.13597 -10.99204 -10.82195 -10.32856 -10.15556 -10.02665 -9.91043 -9.80233 -9.67778 -9.48166 -8.82601 -8.62912 -8.41991 -6.89858 -5.81894 -3.19034 0.68996 0.77680 2.41059 2.61150 3.06395 3.35990 3.39626 3.43487 3.44900 3.77576 3.97235 4.17301 4.39630 4.44538 4.54170 4.63438 4.67946 4.84263 5.05058 5.22405 5.26613 5.29553 5.32797 5.43117 5.44383 5.55864 5.65383 5.72580 5.73853 5.87484 5.96567 6.04454 6.15906 6.16417 6.38334 6.45771 6.50413 6.60685 6.69658 6.73869 6.97000 7.45738 7.54607 7.58475 7.74268 8.19658 8.26361 9.12053 9.72592 10.39280 11.30012 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002275 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.264484 B =12302.879193 C =13263.482011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.511 3.489 18 O -0.516 6.516 19 C 0.063 3.937 20 H 0.115 0.885 21 C -0.098 4.098 22 C -0.146 4.146 23 C -0.100 4.100 24 C 0.066 3.934 25 F -0.138 7.138 26 C -0.115 4.115 27 C -0.109 4.109 28 C 0.103 3.897 29 O -0.269 6.269 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 -22.413 5.969 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.293 3.707 18 O -0.390 6.390 19 C 0.003 3.997 20 H 0.132 0.868 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.119 4.119 24 C 0.047 3.953 25 F -0.117 7.117 26 C -0.134 4.134 27 C -0.127 4.127 28 C 0.057 3.943 29 O -0.181 6.181 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.229 -21.359 6.732 23.533 hybrid contribution 0.381 0.317 -0.276 0.568 sum 7.610 -21.042 6.456 23.289 Atomic orbital electron populations 1.69937 1.05046 1.25419 1.55600 1.24932 0.95693 0.97943 1.01201 0.86142 0.78845 0.83331 0.77589 1.21484 1.21547 1.20478 1.18976 0.90400 0.82142 1.44969 0.90613 1.44490 1.06514 1.01026 1.79170 1.21466 0.84780 0.90193 0.98899 1.23003 0.97588 0.99596 0.98545 1.22613 0.97120 0.96951 0.99729 1.21142 0.94580 0.88234 0.91704 0.94395 1.22358 0.96924 0.82751 0.99548 1.46020 1.59633 1.21117 1.09999 1.19900 0.79787 0.87360 0.83618 1.90784 1.55543 1.48669 1.44022 1.23287 0.97890 0.94902 0.83573 0.86759 1.21838 1.00324 0.92540 0.98817 1.20566 0.99986 0.94439 0.99734 1.20194 1.00863 0.93483 0.97346 1.17362 1.01191 0.79211 0.97572 1.91503 1.93157 1.33317 1.93738 1.20854 0.98681 0.93699 1.00181 1.20088 1.01583 0.93378 0.97677 1.19654 0.94790 0.84172 0.95728 1.87011 1.81942 1.22730 1.26429 0.93533 0.95554 0.90928 0.92317 0.92267 0.92354 0.91818 0.91412 0.91147 0.76960 0.87919 0.87475 0.84235 0.83755 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 10.58 55.49 0.59 -25.61 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.32 9.72 -15.06 -0.15 -6.46 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.59 -14.06 3.13 -162.57 -0.51 -14.57 16 10 C 0.17 3.95 5.41 -2.53 -0.01 3.94 16 11 C -0.15 -2.57 7.09 -24.58 -0.17 -2.75 16 12 C -0.13 -1.93 6.20 -24.89 -0.15 -2.08 16 13 C 0.15 2.80 3.19 -66.95 -0.21 2.59 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 1.97 5.10 -4.04 -0.02 1.95 16 16 N -0.71 -9.51 5.36 -60.29 -0.32 -9.83 16 17 C 0.51 7.50 7.13 -10.99 -0.08 7.42 16 18 O -0.52 -10.38 16.57 -13.51 -0.22 -10.60 16 19 C 0.06 0.68 4.04 -26.99 -0.11 0.57 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 21 C -0.10 -0.81 6.66 -26.37 -0.18 -0.99 16 22 C -0.15 -1.38 6.28 -103.95 -0.65 -2.04 16 23 C -0.10 -0.85 10.02 -39.65 -0.40 -1.24 16 24 C 0.07 0.59 7.31 -39.38 -0.29 0.30 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.12 -0.92 10.00 -39.61 -0.40 -1.31 16 27 C -0.11 -0.98 10.06 -39.31 -0.40 -1.37 16 28 C 0.10 1.13 7.04 -38.97 -0.27 0.86 16 29 O -0.27 -3.59 10.39 -39.43 -0.41 -4.00 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.97 7.78 -51.93 -0.40 0.56 16 37 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 38 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 39 H 0.40 3.78 8.39 -40.82 -0.34 3.43 16 40 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -33.23 369.01 -10.00 -43.23 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.11 Total: 1.04 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.58 Total: -0.73 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.24 Total: -50.01 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.63 Total: -14.61 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.23 -10.00 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028178759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.153 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds