Wall clock time and date at job start Tue Mar 31 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00391 * 2 1 4 4 H 1.48498 * 109.47525 * 270.00738 * 3 2 1 5 5 H 1.48509 * 109.46893 * 30.00527 * 3 2 1 6 6 H 1.48493 * 109.47029 * 150.00152 * 3 2 1 7 7 C 1.38811 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65047 * 14.86479 * 9 7 2 11 11 C 1.54905 * 104.83552 * 155.83642 * 10 9 7 12 12 C 1.55161 * 101.57987 * 37.01214 * 11 10 9 13 13 C 1.47027 * 125.64737 * 194.82331 * 9 7 2 14 14 H 1.08993 * 109.88744 * 300.66681 * 13 9 7 15 15 C 1.53005 * 109.88087 * 61.68117 * 13 9 7 16 16 N 1.46498 * 109.47038 * 184.49481 * 15 13 9 17 17 C 1.34779 * 120.00182 * 185.10424 * 16 15 13 18 18 O 1.21286 * 119.99458 * 359.72795 * 17 16 15 19 19 C 1.50696 * 120.00127 * 179.72401 * 17 16 15 20 20 H 1.09000 * 110.66488 * 55.70049 * 19 17 16 21 21 C 1.54703 * 110.74853 * 292.48301 * 19 17 16 22 22 C 1.51946 * 101.79818 * 216.50701 * 21 19 17 23 23 C 1.37753 * 132.07078 * 195.83962 * 22 21 19 24 24 C 1.38538 * 119.95604 * 178.84778 * 23 22 21 25 25 F 1.35098 * 120.14164 * 180.02562 * 24 23 22 26 26 C 1.38473 * 119.71278 * 359.97438 * 24 23 22 27 27 C 1.37933 * 120.32467 * 0.19300 * 26 24 23 28 28 C 1.38863 * 107.11369 * 15.14346 * 22 21 19 29 29 O 1.36196 * 111.22179 * 1.24359 * 28 22 21 30 30 H 0.97002 * 119.99546 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36874 * 274.67956 * 10 9 7 32 32 H 1.09003 * 110.36685 * 36.88902 * 10 9 7 33 33 H 1.08995 * 111.00891 * 155.08614 * 11 10 9 34 34 H 1.08998 * 111.00614 * 278.89791 * 11 10 9 35 35 H 1.09004 * 110.71786 * 206.13827 * 12 11 10 36 36 H 1.08992 * 110.72044 * 82.86503 * 12 11 10 37 37 H 1.08998 * 109.47386 * 64.48917 * 15 13 9 38 38 H 1.09001 * 109.46878 * 304.49485 * 15 13 9 39 39 H 0.97000 * 119.99722 * 4.83237 * 16 15 13 40 40 H 1.08994 * 110.94153 * 334.55247 * 21 19 17 41 41 H 1.09004 * 110.93590 * 98.23404 * 21 19 17 42 42 H 1.08000 * 120.02233 * 358.87455 * 23 22 21 43 43 H 1.07995 * 119.83812 * 180.17012 * 26 24 23 44 44 H 1.08005 * 119.85989 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1070 -2.5531 -0.3073 11 6 -0.2449 -4.0224 -0.7785 12 6 0.7641 -4.7443 0.1533 13 6 1.8974 -3.7077 0.3046 14 1 2.7041 -3.9325 -0.3930 15 6 2.4300 -3.7249 1.7389 16 7 3.0928 -5.0054 1.9983 17 6 3.5510 -5.2890 3.2337 18 8 3.4190 -4.4820 4.1294 19 6 4.2272 -6.6087 3.5020 20 1 5.0676 -6.7553 2.8235 21 6 3.2181 -7.7755 3.3847 22 6 3.6947 -8.7101 4.4838 23 6 3.4330 -10.0371 4.7448 24 6 4.0333 -10.6608 5.8265 25 9 3.7798 -11.9622 6.0856 26 6 4.8951 -9.9448 6.6402 27 6 5.1543 -8.6151 6.3807 28 6 4.5507 -7.9803 5.2981 29 8 4.6576 -6.6914 4.8713 30 1 -0.4849 0.8401 0.0004 31 1 -0.7083 -2.3831 0.5858 32 1 -0.4062 -1.8688 -1.1012 33 1 -1.2580 -4.3909 -0.6174 34 1 0.0446 -4.1262 -1.8241 35 1 1.1357 -5.6564 -0.3137 36 1 0.3091 -4.9622 1.1194 37 1 1.6017 -3.5968 2.4357 38 1 3.1447 -2.9126 1.8708 39 1 3.1984 -5.6508 1.2818 40 1 2.2019 -7.4327 3.5792 41 1 3.2863 -8.2526 2.4070 42 1 2.7608 -10.5911 4.1064 43 1 5.3662 -10.4297 7.4823 44 1 5.8280 -8.0639 7.0201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028178759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:59 Heat of formation + Delta-G solvation = -78.437181 kcal Electronic energy + Delta-G solvation = -28009.873642 eV Core-core repulsion = 23841.984223 eV Total energy + Delta-G solvation = -4167.889420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.85568 -42.49013 -40.58695 -39.25428 -38.13789 -35.86836 -34.45881 -33.90017 -31.65531 -31.13762 -30.71846 -29.83918 -26.81372 -26.16798 -24.83772 -23.46882 -22.91961 -22.08347 -21.61572 -21.13814 -19.10334 -18.79861 -18.45860 -18.18890 -18.09964 -17.30844 -16.65996 -16.60176 -16.50511 -16.20355 -15.72801 -15.67602 -15.23887 -15.11239 -14.66958 -14.48760 -14.19077 -14.04019 -13.96765 -13.90626 -13.65372 -13.54410 -13.38803 -13.04344 -12.92905 -12.87691 -12.65256 -12.13643 -12.04189 -11.86628 -11.81854 -11.72272 -11.47941 -11.37451 -10.97561 -10.68008 -10.16652 -10.10066 -9.14339 -8.85913 -7.89642 -5.26893 0.03149 0.11843 1.37994 1.43068 1.45607 1.53392 1.57000 2.32294 2.46559 2.55560 3.04554 3.25642 3.30456 3.44924 3.63392 3.79214 3.81536 3.94239 3.97413 4.01003 4.06782 4.21104 4.29189 4.41023 4.46130 4.55583 4.65486 4.68752 4.74713 4.83085 4.96851 5.02565 5.03709 5.08565 5.16492 5.21502 5.22053 5.32336 5.47859 5.49370 5.57742 5.67569 5.79400 6.00166 6.22891 6.48548 7.08461 7.15593 7.76253 8.41467 9.21250 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002275 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.264484 B =12302.879193 C =13263.482011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.058 0.942 15 C 0.129 3.871 16 N -0.692 5.692 17 C 0.510 3.490 18 O -0.580 6.580 19 C 0.068 3.932 20 H 0.151 0.849 21 C -0.089 4.089 22 C -0.147 4.147 23 C -0.098 4.098 24 C 0.057 3.943 25 F -0.142 7.142 26 C -0.111 4.111 27 C -0.114 4.114 28 C 0.073 3.927 29 O -0.304 6.304 30 H 0.247 0.753 31 H -0.010 1.010 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.422 0.578 40 H 0.095 0.905 41 H 0.151 0.849 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -26.049 4.932 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.346 5.346 17 C 0.296 3.704 18 O -0.459 6.459 19 C 0.009 3.991 20 H 0.169 0.831 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.117 4.117 24 C 0.038 3.962 25 F -0.121 7.121 26 C -0.130 4.130 27 C -0.133 4.133 28 C 0.028 3.972 29 O -0.218 6.218 30 H 0.056 0.944 31 H 0.008 0.992 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.260 0.740 40 H 0.113 0.887 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.391 -25.077 5.659 27.043 hybrid contribution 0.076 1.368 0.112 1.375 sum 8.467 -23.709 5.770 25.829 Atomic orbital electron populations 1.70141 1.06277 1.25346 1.57576 1.25686 0.96498 1.01023 1.02252 0.85208 0.77681 0.79637 0.77619 1.20776 1.22361 1.19818 1.19302 0.90782 0.83614 1.43080 0.90421 1.44759 1.06932 1.02273 1.79584 1.21282 0.84127 0.93711 0.96221 1.22865 0.99762 0.95089 0.99491 1.22623 0.94964 0.97497 0.99859 1.21386 0.96333 0.86681 0.91525 0.92419 1.21762 0.95179 0.84030 0.98812 1.45620 1.58520 1.19783 1.10722 1.20694 0.78669 0.88328 0.82755 1.90760 1.57983 1.51110 1.46005 1.23391 0.99423 0.92751 0.83524 0.83139 1.21910 0.98854 0.91158 1.00708 1.20682 0.99645 0.94708 0.99811 1.20401 1.00745 0.93167 0.97367 1.17576 1.01504 0.79148 0.98014 1.91497 1.93213 1.33590 1.93797 1.21093 0.98171 0.93181 1.00533 1.20320 1.01678 0.93872 0.97416 1.19976 0.96492 0.83681 0.97083 1.86959 1.82557 1.24453 1.27825 0.94367 0.99240 0.94732 0.90049 0.90996 0.87000 0.91642 0.94510 0.94828 0.74006 0.88656 0.83076 0.82023 0.81502 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.58 21.65 0.23 -56.57 16 2 C -0.06 -3.46 5.47 84.86 0.46 -2.99 16 3 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.05 9.72 84.03 0.82 -12.23 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.61 -29.63 3.13 -668.25 -2.09 -31.72 16 10 C 0.17 8.11 5.41 86.85 0.47 8.58 16 11 C -0.13 -4.30 7.09 31.99 0.23 -4.07 16 12 C -0.11 -2.99 6.20 31.78 0.20 -2.79 16 13 C 0.15 5.21 3.19 45.34 0.14 5.35 16 14 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.13 4.66 5.10 86.38 0.44 5.10 16 16 N -0.69 -17.02 5.36 -463.05 -2.48 -19.50 16 17 C 0.51 14.53 7.13 87.66 0.62 15.16 16 18 O -0.58 -24.12 16.57 15.18 0.25 -23.87 16 19 C 0.07 1.31 4.04 30.43 0.12 1.43 16 20 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 21 C -0.09 -1.16 6.66 30.83 0.21 -0.95 16 22 C -0.15 -2.39 6.28 -19.43 -0.12 -2.51 16 23 C -0.10 -1.37 10.02 22.23 0.22 -1.14 16 24 C 0.06 0.87 7.31 22.40 0.16 1.04 16 25 F -0.14 -2.35 17.27 44.97 0.78 -1.58 16 26 C -0.11 -1.54 10.00 22.25 0.22 -1.31 16 27 C -0.11 -1.91 10.06 22.44 0.23 -1.68 16 28 C 0.07 1.51 7.04 22.67 0.16 1.67 16 29 O -0.30 -7.95 10.39 -77.56 -0.81 -8.75 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H -0.01 -0.56 8.06 -2.38 -0.02 -0.58 16 32 H 0.03 1.86 6.94 -2.39 -0.02 1.84 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.06 1.77 7.78 -2.39 -0.02 1.75 16 37 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 38 H 0.03 1.46 7.86 -2.39 -0.02 1.44 16 39 H 0.42 6.18 8.39 -92.71 -0.78 5.40 16 40 H 0.10 1.42 7.92 -2.39 -0.02 1.40 16 41 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -79.65 369.01 2.74 -76.91 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.25 Total: 8.24 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.58 Total: 8.63 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.34 Total: -107.80 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.55 Total: -32.63 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.78 Total: -1.58 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.65 2.74 -76.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028178759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds