Wall clock time and date at job start Tue Mar 31 2020 18:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99422 * 2 1 4 4 H 1.48498 * 109.47191 * 264.33710 * 3 2 1 5 5 H 1.48498 * 109.47492 * 24.34120 * 3 2 1 6 6 H 1.48512 * 109.46696 * 144.33948 * 3 2 1 7 7 C 1.38809 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00128 * 339.97796 * 7 2 1 9 9 N 1.36937 * 119.99967 * 159.97440 * 7 2 1 10 10 C 1.47424 * 125.64789 * 335.54871 * 9 7 2 11 11 C 1.54910 * 104.83303 * 204.17501 * 10 9 7 12 12 C 1.55155 * 101.57965 * 322.98929 * 11 10 9 13 13 C 1.47019 * 125.64986 * 155.60679 * 9 7 2 14 14 H 1.08998 * 110.01240 * 59.40426 * 13 9 7 15 15 C 1.53003 * 109.88138 * 298.31197 * 13 9 7 16 16 N 1.46500 * 109.47147 * 62.48585 * 15 13 9 17 17 C 1.34780 * 120.00271 * 181.31764 * 16 15 13 18 18 O 1.21277 * 119.99597 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00191 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.66624 * 53.23551 * 19 17 16 21 21 C 1.54706 * 110.75100 * 289.81761 * 19 17 16 22 22 C 1.51654 * 101.94674 * 266.90383 * 21 19 17 23 23 C 1.37747 * 132.13267 * 164.40480 * 22 21 19 24 24 C 1.38534 * 119.95988 * 180.87184 * 23 22 21 25 25 F 1.35095 * 120.14794 * 179.97438 * 24 23 22 26 26 C 1.38478 * 119.71068 * 0.02562 * 24 23 22 27 27 C 1.37928 * 120.32612 * 359.81053 * 26 24 23 28 28 C 1.38861 * 107.05357 * 344.85898 * 22 21 19 29 29 O 1.36189 * 111.21250 * 358.57074 * 28 22 21 30 30 H 0.97001 * 120.00264 * 359.97438 * 1 2 3 31 31 H 1.09011 * 110.36677 * 85.33686 * 10 9 7 32 32 H 1.08996 * 110.46652 * 323.06632 * 10 9 7 33 33 H 1.09006 * 111.00355 * 204.91898 * 11 10 9 34 34 H 1.08996 * 111.03842 * 81.08014 * 11 10 9 35 35 H 1.08991 * 110.72773 * 277.13751 * 12 11 10 36 36 H 1.09007 * 110.71674 * 153.86079 * 12 11 10 37 37 H 1.09005 * 109.46875 * 302.49177 * 15 13 9 38 38 H 1.09000 * 109.47489 * 182.49030 * 15 13 9 39 39 H 0.97002 * 119.99952 * 1.32350 * 16 15 13 40 40 H 1.08997 * 110.93564 * 148.74284 * 21 19 17 41 41 H 1.08997 * 110.93412 * 25.06621 * 21 19 17 42 42 H 1.08004 * 120.02579 * 0.89088 * 23 22 21 43 43 H 1.08002 * 119.83581 * 179.79121 * 26 24 23 44 44 H 1.08004 * 119.86859 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6172 1.9775 -1.3932 5 1 1.3928 2.6843 0.5770 6 1 3.4828 1.4778 0.8163 7 6 2.0103 -1.2021 0.0005 8 1 1.5194 -2.1090 0.3212 9 7 3.3176 -1.2380 -0.4055 10 6 3.9622 -0.2717 -1.3134 11 6 5.1532 -1.0440 -1.9337 12 6 5.6298 -1.9000 -0.7306 13 6 4.3105 -2.2473 -0.0094 14 1 3.9739 -3.2396 -0.3096 15 6 4.5191 -2.2053 1.5058 16 7 3.2637 -2.5430 2.1812 17 6 3.2016 -2.5433 3.5275 18 8 4.1850 -2.2635 4.1799 19 6 1.9104 -2.8912 4.2222 20 1 1.5288 -3.8488 3.8678 21 6 0.8618 -1.7713 4.0233 22 6 1.0779 -0.9162 5.2570 23 6 0.6839 0.3651 5.5738 24 6 1.0425 0.9178 6.7925 25 9 0.6586 2.1743 7.1069 26 6 1.7972 0.1771 7.6866 27 6 2.1888 -1.1072 7.3706 28 6 1.8279 -1.6709 6.1493 29 8 2.0886 -2.9103 5.6488 30 1 -0.4850 0.8400 0.0004 31 1 4.3204 0.5930 -0.7547 32 1 3.2668 0.0421 -2.0919 33 1 5.9357 -0.3588 -2.2600 34 1 4.8228 -1.6770 -2.7571 35 1 6.2841 -1.3201 -0.0797 36 1 6.1305 -2.8048 -1.0754 37 1 4.8329 -1.2042 1.8017 38 1 5.2880 -2.9250 1.7869 39 1 2.4771 -2.7665 1.6594 40 1 -0.1478 -2.1817 4.0058 41 1 1.0658 -1.2037 3.1154 42 1 0.0955 0.9385 4.8728 43 1 2.0808 0.6072 8.6358 44 1 2.7769 -1.6784 8.0737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028178761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:07 Heat of formation + Delta-G solvation = -54.969543 kcal Electronic energy + Delta-G solvation = -29677.109616 eV Core-core repulsion = 25510.237829 eV Total energy + Delta-G solvation = -4166.871786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.76222 -41.36589 -39.04277 -37.94072 -36.91549 -34.10535 -32.84562 -32.67266 -30.23586 -30.10495 -29.59718 -28.84329 -25.40120 -24.47490 -23.41699 -22.38949 -21.77982 -21.19798 -20.04785 -19.64014 -17.85344 -17.37174 -17.20307 -16.82590 -16.60779 -15.83724 -15.53273 -15.32531 -15.20784 -15.03677 -14.33892 -14.22491 -14.02912 -13.52366 -13.36296 -13.16837 -12.97540 -12.90674 -12.77609 -12.64194 -12.55867 -12.25193 -11.81966 -11.59982 -11.39057 -11.28237 -11.23583 -11.04153 -10.79776 -10.73989 -10.60424 -10.14599 -10.08399 -9.60711 -9.41834 -8.99401 -8.84938 -8.48762 -7.95863 -7.18332 -6.14627 -3.49290 1.14857 1.22861 2.84684 3.07261 3.24789 3.39876 3.43345 3.62345 3.68731 4.16963 4.39890 4.51585 4.60706 4.78452 4.86575 4.98983 5.05970 5.10209 5.16607 5.18734 5.29031 5.32317 5.47796 5.53595 5.70678 5.77650 5.83031 5.84552 6.01483 6.03225 6.06159 6.12744 6.16743 6.17415 6.22466 6.31247 6.35613 6.56188 6.57566 6.68806 6.74773 6.94848 7.11986 7.54382 7.98107 8.10054 8.56797 8.64913 9.49099 10.02803 10.99696 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.004427 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.356595 B = 6322.669666 C = 7497.627119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.033 3.967 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.088 0.912 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.146 3.854 14 H 0.051 0.949 15 C 0.115 3.885 16 N -0.696 5.696 17 C 0.493 3.507 18 O -0.542 6.542 19 C 0.065 3.935 20 H 0.141 0.859 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.100 4.100 24 C 0.065 3.935 25 F -0.141 7.141 26 C -0.122 4.122 27 C -0.108 4.108 28 C 0.105 3.895 29 O -0.274 6.274 30 H 0.265 0.735 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.412 0.588 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -4.617 6.946 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.105 0.895 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.038 3.962 14 H 0.069 0.931 15 C -0.010 4.010 16 N -0.351 5.351 17 C 0.277 3.723 18 O -0.420 6.420 19 C 0.006 3.994 20 H 0.159 0.841 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.119 4.119 24 C 0.046 3.954 25 F -0.119 7.119 26 C -0.141 4.141 27 C -0.127 4.127 28 C 0.060 3.940 29 O -0.187 6.187 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.252 0.748 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.322 -4.489 7.546 9.787 hybrid contribution -0.049 1.369 -0.327 1.408 sum 4.273 -3.121 7.219 8.950 Atomic orbital electron populations 1.69798 1.05404 1.26885 1.52268 1.25061 0.95113 0.97395 0.99151 0.86976 0.79383 0.84563 0.77936 1.21158 1.23026 1.20135 1.18348 0.83154 0.94233 1.41529 0.89466 1.44856 1.07284 1.29220 1.51443 1.21942 0.93668 0.92702 0.92984 1.22718 0.98041 0.98811 0.97349 1.22520 0.96502 0.99882 0.97308 1.21327 0.89804 0.94393 0.90643 0.93149 1.21957 0.85160 1.00053 0.93875 1.46060 1.15403 1.68277 1.05311 1.20704 0.89850 0.78416 0.83349 1.90679 1.36978 1.48790 1.65532 1.23342 0.93788 1.02359 0.79954 0.84148 1.21882 0.99603 0.94452 0.98052 1.20581 1.00396 0.95085 0.97557 1.20265 1.01287 0.94501 0.95830 1.17357 1.01972 0.80881 0.95202 1.91479 1.89739 1.37661 1.93052 1.20762 0.99329 0.93952 1.00008 1.19996 1.02377 0.94451 0.95839 1.19553 0.94437 0.85214 0.94812 1.86901 1.85886 1.25947 1.19921 0.92509 0.95883 0.92400 0.91707 0.91195 0.91382 0.91239 0.92062 0.92662 0.74825 0.87428 0.86203 0.84188 0.84092 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.97 55.49 0.78 -23.87 16 2 C 0.03 0.86 5.45 -17.43 -0.09 0.77 16 3 Si 0.88 21.57 24.33 -169.99 -4.14 17.43 16 4 H -0.28 -6.80 6.68 56.52 0.38 -6.42 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -6.91 6.75 56.52 0.38 -6.53 16 7 C -0.25 -5.86 8.85 -15.06 -0.13 -6.00 16 8 H 0.09 2.10 6.54 -52.49 -0.34 1.76 16 9 N -0.60 -12.68 2.86 -162.57 -0.47 -13.14 16 10 C 0.11 2.23 4.73 -2.53 -0.01 2.22 16 11 C -0.13 -1.98 7.08 -24.58 -0.17 -2.15 16 12 C -0.12 -1.77 6.48 -24.90 -0.16 -1.93 16 13 C 0.15 2.50 3.35 -66.95 -0.22 2.27 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C 0.12 2.04 5.16 -4.04 -0.02 2.01 16 16 N -0.70 -12.26 4.93 -60.29 -0.30 -12.55 16 17 C 0.49 9.00 7.03 -10.99 -0.08 8.93 16 18 O -0.54 -11.77 16.45 -13.48 -0.22 -12.00 16 19 C 0.07 0.99 4.11 -26.99 -0.11 0.88 16 20 H 0.14 1.62 8.14 -51.93 -0.42 1.19 16 21 C -0.10 -1.59 6.64 -26.52 -0.18 -1.76 16 22 C -0.14 -2.21 6.26 -104.10 -0.65 -2.86 16 23 C -0.10 -1.58 10.01 -39.65 -0.40 -1.98 16 24 C 0.07 0.97 7.31 -39.38 -0.29 0.68 16 25 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 26 C -0.12 -1.60 10.00 -39.61 -0.40 -1.99 16 27 C -0.11 -1.51 10.06 -39.31 -0.40 -1.90 16 28 C 0.11 1.71 6.82 -38.97 -0.27 1.44 16 29 O -0.27 -4.51 10.44 -39.38 -0.41 -4.92 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.02 0.50 5.44 -51.92 -0.28 0.22 16 32 H 0.06 1.23 7.18 -51.93 -0.37 0.86 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.41 7.10 5.75 -40.82 -0.23 6.86 16 40 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.12 2.17 7.91 -51.93 -0.41 1.76 16 42 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 43 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -30.60 358.41 -8.78 -39.37 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.88 Total: 7.71 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.58 Total: -1.37 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.01 Total: -49.56 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.63 Total: -16.92 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.60 -8.78 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028178761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.595 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds