Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99422 * 2 1 4 4 H 1.48498 * 109.47191 * 264.33710 * 3 2 1 5 5 H 1.48498 * 109.47492 * 24.34120 * 3 2 1 6 6 H 1.48512 * 109.46696 * 144.33948 * 3 2 1 7 7 C 1.38809 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00128 * 339.97796 * 7 2 1 9 9 N 1.36937 * 119.99967 * 159.97440 * 7 2 1 10 10 C 1.47424 * 125.64789 * 335.54871 * 9 7 2 11 11 C 1.54910 * 104.83303 * 204.17501 * 10 9 7 12 12 C 1.55155 * 101.57965 * 322.98929 * 11 10 9 13 13 C 1.47019 * 125.64986 * 155.60679 * 9 7 2 14 14 H 1.08998 * 110.01240 * 59.40426 * 13 9 7 15 15 C 1.53003 * 109.88138 * 298.31197 * 13 9 7 16 16 N 1.46500 * 109.47147 * 62.48585 * 15 13 9 17 17 C 1.34780 * 120.00271 * 181.31764 * 16 15 13 18 18 O 1.21277 * 119.99597 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00191 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.66624 * 53.23551 * 19 17 16 21 21 C 1.54706 * 110.75100 * 289.81761 * 19 17 16 22 22 C 1.51654 * 101.94674 * 266.90383 * 21 19 17 23 23 C 1.37747 * 132.13267 * 164.40480 * 22 21 19 24 24 C 1.38534 * 119.95988 * 180.87184 * 23 22 21 25 25 F 1.35095 * 120.14794 * 179.97438 * 24 23 22 26 26 C 1.38478 * 119.71068 * 0.02562 * 24 23 22 27 27 C 1.37928 * 120.32612 * 359.81053 * 26 24 23 28 28 C 1.38861 * 107.05357 * 344.85898 * 22 21 19 29 29 O 1.36189 * 111.21250 * 358.57074 * 28 22 21 30 30 H 0.97001 * 120.00264 * 359.97438 * 1 2 3 31 31 H 1.09011 * 110.36677 * 85.33686 * 10 9 7 32 32 H 1.08996 * 110.46652 * 323.06632 * 10 9 7 33 33 H 1.09006 * 111.00355 * 204.91898 * 11 10 9 34 34 H 1.08996 * 111.03842 * 81.08014 * 11 10 9 35 35 H 1.08991 * 110.72773 * 277.13751 * 12 11 10 36 36 H 1.09007 * 110.71674 * 153.86079 * 12 11 10 37 37 H 1.09005 * 109.46875 * 302.49177 * 15 13 9 38 38 H 1.09000 * 109.47489 * 182.49030 * 15 13 9 39 39 H 0.97002 * 119.99952 * 1.32350 * 16 15 13 40 40 H 1.08997 * 110.93564 * 148.74284 * 21 19 17 41 41 H 1.08997 * 110.93412 * 25.06621 * 21 19 17 42 42 H 1.08004 * 120.02579 * 0.89088 * 23 22 21 43 43 H 1.08002 * 119.83581 * 179.79121 * 26 24 23 44 44 H 1.08004 * 119.86859 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6172 1.9775 -1.3932 5 1 1.3928 2.6843 0.5770 6 1 3.4828 1.4778 0.8163 7 6 2.0103 -1.2021 0.0005 8 1 1.5194 -2.1090 0.3212 9 7 3.3176 -1.2380 -0.4055 10 6 3.9622 -0.2717 -1.3134 11 6 5.1532 -1.0440 -1.9337 12 6 5.6298 -1.9000 -0.7306 13 6 4.3105 -2.2473 -0.0094 14 1 3.9739 -3.2396 -0.3096 15 6 4.5191 -2.2053 1.5058 16 7 3.2637 -2.5430 2.1812 17 6 3.2016 -2.5433 3.5275 18 8 4.1850 -2.2635 4.1799 19 6 1.9104 -2.8912 4.2222 20 1 1.5288 -3.8488 3.8678 21 6 0.8618 -1.7713 4.0233 22 6 1.0779 -0.9162 5.2570 23 6 0.6839 0.3651 5.5738 24 6 1.0425 0.9178 6.7925 25 9 0.6586 2.1743 7.1069 26 6 1.7972 0.1771 7.6866 27 6 2.1888 -1.1072 7.3706 28 6 1.8279 -1.6709 6.1493 29 8 2.0886 -2.9103 5.6488 30 1 -0.4850 0.8400 0.0004 31 1 4.3204 0.5930 -0.7547 32 1 3.2668 0.0421 -2.0919 33 1 5.9357 -0.3588 -2.2600 34 1 4.8228 -1.6770 -2.7571 35 1 6.2841 -1.3201 -0.0797 36 1 6.1305 -2.8048 -1.0754 37 1 4.8329 -1.2042 1.8017 38 1 5.2880 -2.9250 1.7869 39 1 2.4771 -2.7665 1.6594 40 1 -0.1478 -2.1817 4.0058 41 1 1.0658 -1.2037 3.1154 42 1 0.0955 0.9385 4.8728 43 1 2.0808 0.6072 8.6358 44 1 2.7769 -1.6784 8.0737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028178761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = -73.475324 kcal Electronic energy + Delta-G solvation = -29677.912087 eV Core-core repulsion = 25510.237829 eV Total energy + Delta-G solvation = -4167.674257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.94801 -42.60344 -40.47488 -39.38740 -38.13881 -35.59162 -34.64434 -33.92300 -31.78650 -31.54409 -30.78757 -30.14684 -26.82356 -26.05890 -24.85731 -23.61626 -22.96482 -22.58737 -21.51692 -21.04987 -19.34663 -18.59376 -18.56041 -18.28830 -17.82785 -17.33921 -17.00870 -16.78904 -16.63616 -16.38445 -15.71076 -15.47895 -15.27006 -15.20472 -14.89447 -14.54750 -14.36806 -14.21663 -14.11369 -14.01179 -13.82465 -13.50971 -13.42457 -13.04599 -12.90237 -12.79730 -12.67154 -12.51308 -12.34606 -12.06087 -11.91278 -11.77010 -11.61736 -11.32858 -10.85277 -10.77713 -10.15852 -9.99308 -9.16984 -8.98434 -8.16367 -5.42954 -0.01724 0.05221 1.23863 1.36499 1.40254 1.44387 1.81924 2.35492 2.40955 2.45732 2.99967 3.10452 3.29202 3.31929 3.46026 3.64455 3.71424 3.85666 3.99117 4.00309 4.05282 4.14766 4.17095 4.29485 4.40231 4.45225 4.57188 4.65234 4.67906 4.73259 4.80082 4.85144 4.98181 5.01214 5.01728 5.02350 5.14240 5.17441 5.27563 5.39719 5.47561 5.51879 5.73969 5.93782 6.11854 6.55765 6.77368 7.17752 7.57058 8.17925 9.01211 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.004427 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.356595 B = 6322.669666 C = 7497.627119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.278 1.278 5 H -0.319 1.319 6 H -0.289 1.289 7 C -0.211 4.211 8 H 0.087 0.913 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.143 3.857 14 H 0.068 0.932 15 C 0.118 3.882 16 N -0.694 5.694 17 C 0.489 3.511 18 O -0.580 6.580 19 C 0.070 3.930 20 H 0.182 0.818 21 C -0.097 4.097 22 C -0.155 4.155 23 C -0.119 4.119 24 C 0.056 3.944 25 F -0.143 7.143 26 C -0.109 4.109 27 C -0.106 4.106 28 C 0.084 3.916 29 O -0.280 6.280 30 H 0.258 0.742 31 H 0.006 0.994 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.177 0.823 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -6.383 7.211 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.249 1.249 6 H -0.216 1.216 7 C -0.340 4.340 8 H 0.104 0.896 9 N -0.344 5.344 10 C -0.024 4.024 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.037 3.963 14 H 0.085 0.915 15 C -0.008 4.008 16 N -0.348 5.348 17 C 0.275 3.725 18 O -0.461 6.461 19 C 0.011 3.989 20 H 0.199 0.801 21 C -0.134 4.134 22 C -0.156 4.156 23 C -0.137 4.137 24 C 0.037 3.963 25 F -0.121 7.121 26 C -0.127 4.127 27 C -0.125 4.125 28 C 0.039 3.961 29 O -0.192 6.192 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.153 0.847 43 H 0.195 0.805 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.107 -6.266 7.781 11.709 hybrid contribution -0.513 1.887 -0.381 1.992 sum 5.593 -4.379 7.400 10.258 Atomic orbital electron populations 1.69856 1.06116 1.26498 1.55835 1.25377 0.95361 0.98761 1.01292 0.86416 0.77712 0.83341 0.77695 1.20477 1.24853 1.21595 1.18486 0.84314 0.93513 1.37643 0.89590 1.45095 1.07233 1.30075 1.52003 1.22023 0.95260 0.92823 0.92342 1.22677 0.96325 0.98844 0.97702 1.22567 0.94924 1.01425 0.96453 1.21567 0.90528 0.93821 0.90409 0.91460 1.21924 0.85704 0.98896 0.94269 1.46084 1.15520 1.67763 1.05411 1.21267 0.90502 0.77433 0.83323 1.90650 1.38635 1.50561 1.66217 1.23511 0.91878 1.03998 0.79488 0.80109 1.21822 1.00961 0.94272 0.96373 1.20733 1.01220 0.95473 0.98181 1.20374 1.02038 0.94740 0.96593 1.17550 1.02439 0.81009 0.95349 1.91472 1.89839 1.37824 1.93014 1.21135 0.97562 0.93293 1.00735 1.20409 1.01828 0.94791 0.95432 1.19900 0.95060 0.85331 0.95796 1.86885 1.86050 1.26096 1.20198 0.93234 0.97656 0.94353 0.89211 0.89853 0.91114 0.87436 0.95189 0.90523 0.74618 0.85119 0.89366 0.84743 0.80522 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.79 13.97 21.65 0.30 -52.48 16 2 C -0.01 -0.62 5.45 84.86 0.46 -0.16 16 3 Si 0.92 45.92 24.33 68.60 1.67 47.59 16 4 H -0.28 -13.40 6.68 99.48 0.66 -12.73 16 5 H -0.32 -16.70 7.11 99.48 0.71 -16.00 16 6 H -0.29 -14.89 6.75 99.48 0.67 -14.22 16 7 C -0.21 -10.08 8.85 84.03 0.74 -9.34 16 8 H 0.09 4.12 6.54 -2.91 -0.02 4.10 16 9 N -0.62 -25.43 2.86 -668.26 -1.91 -27.34 16 10 C 0.10 3.90 4.73 86.86 0.41 4.31 16 11 C -0.12 -3.15 7.08 31.99 0.23 -2.93 16 12 C -0.12 -2.85 6.48 31.78 0.21 -2.65 16 13 C 0.14 4.54 3.35 45.34 0.15 4.69 16 14 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 15 C 0.12 4.00 5.16 86.38 0.45 4.44 16 16 N -0.69 -23.95 4.93 -463.05 -2.28 -26.23 16 17 C 0.49 17.65 7.03 87.65 0.62 18.27 16 18 O -0.58 -25.13 16.45 15.18 0.25 -24.88 16 19 C 0.07 2.07 4.11 30.43 0.13 2.20 16 20 H 0.18 3.73 8.14 -2.39 -0.02 3.71 16 21 C -0.10 -3.02 6.64 30.73 0.20 -2.82 16 22 C -0.16 -5.12 6.26 -19.53 -0.12 -5.24 16 23 C -0.12 -3.86 10.01 22.22 0.22 -3.64 16 24 C 0.06 1.64 7.31 22.40 0.16 1.80 16 25 F -0.14 -4.22 17.27 44.97 0.78 -3.44 16 26 C -0.11 -2.64 10.00 22.25 0.22 -2.42 16 27 C -0.11 -2.77 10.06 22.44 0.23 -2.55 16 28 C 0.08 2.68 6.82 22.67 0.15 2.83 16 29 O -0.28 -8.88 10.44 -77.50 -0.81 -9.69 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.01 0.25 5.44 -2.38 -0.01 0.23 16 32 H 0.04 1.62 7.18 -2.39 -0.02 1.61 16 33 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.74 7.85 -2.39 -0.02 1.72 16 36 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.41 13.92 5.75 -92.71 -0.53 13.39 16 40 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.09 3.33 7.91 -2.39 -0.02 3.31 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -68.53 358.41 2.88 -65.65 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.43 Total: 24.01 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.46 Total: 6.82 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.89 Total: -106.05 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.56 Total: -34.57 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -68.53 2.88 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028178761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.829 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds