Wall clock time and date at job start Tue Mar 31 2020 18:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48501 * 109.46741 * 269.99668 * 3 2 1 5 5 H 1.48495 * 109.47150 * 29.99560 * 3 2 1 6 6 H 1.48500 * 109.47244 * 149.99382 * 3 2 1 7 7 C 1.38815 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64844 * 13.57250 * 9 7 2 11 11 C 1.54910 * 104.83103 * 155.89531 * 10 9 7 12 12 C 1.55161 * 101.58155 * 37.01008 * 11 10 9 13 13 C 1.47022 * 125.64943 * 193.60525 * 9 7 2 14 14 H 1.09007 * 109.87985 * 300.45350 * 13 9 7 15 15 C 1.52996 * 109.88369 * 61.61492 * 13 9 7 16 16 N 1.46504 * 109.46993 * 182.38288 * 15 13 9 17 17 C 1.34775 * 119.99803 * 185.08916 * 16 15 13 18 18 O 1.21642 * 120.00297 * 0.02562 * 17 16 15 19 19 C 1.47195 * 120.00068 * 180.02562 * 17 16 15 20 20 C 1.35624 * 123.18752 * 0.02562 * 19 17 16 21 21 S 1.70262 * 110.84285 * 179.97438 * 20 19 17 22 22 C 1.75586 * 92.62710 * 359.97438 * 21 20 19 23 23 C 1.34006 * 110.59937 * 359.75899 * 22 21 20 24 24 C 1.52022 * 123.46176 * 179.68873 * 23 22 21 25 25 C 1.53057 * 108.81716 * 343.35272 * 24 23 22 26 26 C 1.53160 * 109.20464 * 50.44149 * 25 24 23 27 27 C 1.51611 * 125.04773 * 180.02562 * 22 21 20 28 28 H 0.96999 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.08993 * 110.36495 * 37.05646 * 10 9 7 30 30 H 1.09001 * 110.46026 * 274.77970 * 10 9 7 31 31 H 1.08998 * 111.00734 * 278.93684 * 11 10 9 32 32 H 1.08997 * 111.00645 * 155.08192 * 11 10 9 33 33 H 1.08998 * 110.71740 * 206.13374 * 12 11 10 34 34 H 1.09000 * 110.71866 * 82.86100 * 12 11 10 35 35 H 1.08998 * 109.47299 * 302.38027 * 15 13 9 36 36 H 1.08996 * 109.47453 * 62.38172 * 15 13 9 37 37 H 0.97003 * 120.00271 * 5.09280 * 16 15 13 38 38 H 1.07998 * 124.57818 * 359.96621 * 20 19 17 39 39 H 1.09001 * 109.73134 * 223.45308 * 24 23 22 40 40 H 1.09001 * 109.51218 * 103.11883 * 24 23 22 41 41 H 1.08999 * 109.51344 * 290.52492 * 25 24 23 42 42 H 1.08996 * 109.51289 * 170.36100 * 25 24 23 43 43 H 1.09001 * 109.54108 * 169.75437 * 26 25 24 44 44 H 1.09001 * 109.54061 * 49.49744 * 26 25 24 45 45 H 1.09002 * 109.59715 * 283.14785 * 27 22 21 46 46 H 1.08996 * 109.59790 * 43.61346 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1125 -2.5500 -0.2811 11 6 -0.2596 -4.0145 -0.7640 12 6 0.7665 -4.7456 0.1416 13 6 1.9026 -3.7107 0.2821 14 1 2.6944 -3.9298 -0.4344 15 6 2.4619 -3.7420 1.7058 16 7 3.0848 -5.0440 1.9572 17 6 3.5569 -5.3394 3.1845 18 8 3.4654 -4.5252 4.0836 19 6 4.1833 -6.6473 3.4370 20 6 4.3194 -7.6017 2.4831 21 16 5.0855 -8.9848 3.1150 22 6 5.2345 -8.2714 4.7125 23 6 4.7191 -7.0345 4.7265 24 6 4.6889 -6.1530 5.9646 25 6 4.9297 -7.0262 7.1984 26 6 6.1758 -7.8872 6.9708 27 6 5.8631 -8.9500 5.9138 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4258 -1.8592 -1.0638 30 1 -0.6986 -2.3882 0.6236 31 1 0.0111 -4.1082 -1.8157 32 1 -1.2696 -4.3845 -0.5877 33 1 1.1290 -5.6531 -0.3412 34 1 0.3295 -4.9729 1.1139 35 1 3.2067 -2.9546 1.8210 36 1 1.6521 -3.5831 2.4179 37 1 3.1575 -5.6934 1.2403 38 1 3.9867 -7.4985 1.4609 39 1 3.7172 -5.6658 6.0459 40 1 5.4716 -5.3978 5.8931 41 1 4.0664 -7.6712 7.3621 42 1 5.0808 -6.3903 8.0706 43 1 6.4585 -8.3735 7.9044 44 1 6.9952 -7.2579 6.6233 45 1 5.1679 -9.6814 6.3258 46 1 6.7846 -9.4477 5.6119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028301784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:38 Heat of formation + Delta-G solvation = -1.210618 kcal Electronic energy + Delta-G solvation = -26340.055865 eV Core-core repulsion = 22741.728417 eV Total energy + Delta-G solvation = -3598.327448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.99182 -38.51405 -37.50880 -35.10824 -34.20861 -32.48264 -30.93292 -29.97074 -29.32067 -28.35210 -25.38749 -24.57775 -23.57872 -23.39775 -21.89773 -20.32808 -19.87330 -19.40249 -18.36669 -17.71178 -17.01163 -16.47161 -15.70309 -15.11914 -14.91001 -14.61534 -14.55472 -14.31495 -14.02912 -13.87970 -13.68221 -13.38701 -13.13608 -12.82158 -12.78961 -12.36861 -12.08619 -11.90019 -11.79885 -11.66512 -11.59384 -11.31018 -11.03354 -10.95574 -10.86605 -10.78697 -10.53985 -10.24929 -10.11297 -9.94833 -9.84964 -9.72628 -9.53139 -8.80674 -8.68195 -8.59116 -8.37585 -6.85899 -5.76883 -3.13640 0.65922 1.35538 1.77501 1.92814 3.38554 3.44776 3.46754 3.49034 3.52879 4.33831 4.48485 4.60179 4.67066 4.74896 4.97780 5.03316 5.17072 5.30187 5.33662 5.37999 5.39252 5.40281 5.49804 5.57498 5.61358 5.69464 5.73597 5.79745 5.88351 5.98826 6.05188 6.09666 6.13030 6.15928 6.23045 6.44705 6.47159 6.54809 6.61849 6.70252 6.81200 7.04999 7.51405 7.59689 7.78710 7.79905 8.24856 8.49570 9.16846 9.77352 10.44198 11.34790 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.002709 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.444564 B =10335.056317 C =11337.388046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.717 5.717 17 C 0.567 3.433 18 O -0.534 6.534 19 C -0.139 4.139 20 C -0.216 4.216 21 S 0.170 5.830 22 C -0.211 4.211 23 C -0.050 4.050 24 C -0.054 4.054 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.042 4.042 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.393 0.607 38 H 0.169 0.831 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -21.619 8.298 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.014 4.014 16 N -0.368 5.368 17 C 0.352 3.648 18 O -0.412 6.412 19 C -0.157 4.157 20 C -0.354 4.354 21 S 0.440 5.560 22 C -0.327 4.327 23 C -0.061 4.061 24 C -0.094 4.094 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.082 4.082 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.226 0.774 38 H 0.187 0.813 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.913 -22.154 8.244 25.632 hybrid contribution -0.032 1.998 -0.011 1.999 sum 9.881 -20.155 8.233 23.909 Atomic orbital electron populations 1.69934 1.05017 1.25310 1.55948 1.24901 0.95687 0.97868 1.01423 0.86138 0.78825 0.83377 0.77559 1.21537 1.21569 1.20503 1.18991 0.90407 0.82180 1.44615 0.90620 1.44489 1.05778 1.00753 1.80261 1.21474 0.84648 0.90278 0.98915 1.23008 0.97460 0.99621 0.98629 1.22607 0.97112 0.96915 0.99801 1.21125 0.94398 0.88088 0.92057 0.94558 1.22254 0.97441 0.82332 0.99416 1.46017 1.60506 1.19243 1.11021 1.17637 0.78470 0.85750 0.82987 1.90777 1.57293 1.49544 1.43624 1.20280 1.05734 0.96094 0.93611 1.25406 1.06753 0.99230 1.04050 1.82790 1.55799 1.15766 1.01671 1.24650 1.10093 0.98855 0.99139 1.20427 0.97395 0.93863 0.94415 1.20540 1.04189 0.95748 0.88880 1.21634 0.97930 0.98494 0.97919 1.21589 0.98555 0.97317 0.98078 1.20286 0.99629 0.97266 0.90969 0.93593 0.90735 0.95677 0.92306 0.92338 0.92514 0.91803 0.91426 0.91438 0.77371 0.81313 0.88927 0.90271 0.91726 0.91203 0.91209 0.91418 0.90368 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.53 55.49 0.58 -26.13 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.42 9.77 -15.06 -0.15 -6.56 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.63 3.13 -162.57 -0.51 -15.14 16 10 C 0.17 4.10 5.43 -2.53 -0.01 4.09 16 11 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 12 C -0.13 -2.11 6.10 -24.90 -0.15 -2.26 16 13 C 0.15 3.00 3.22 -66.96 -0.22 2.79 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.16 5.07 -4.04 -0.02 2.14 16 16 N -0.72 -11.22 5.29 -61.46 -0.33 -11.55 16 17 C 0.57 9.48 7.79 -12.62 -0.10 9.38 16 18 O -0.53 -10.79 14.60 5.24 0.08 -10.71 16 19 C -0.14 -1.89 5.97 -104.56 -0.62 -2.51 16 20 C -0.22 -2.30 10.35 29.80 0.31 -1.99 16 21 S 0.17 1.52 22.99 -107.50 -2.47 -0.95 16 22 C -0.21 -2.17 6.32 -35.35 -0.22 -2.39 16 23 C -0.05 -0.63 5.95 -102.82 -0.61 -1.25 16 24 C -0.05 -0.67 5.07 -27.20 -0.14 -0.81 16 25 C -0.12 -1.10 5.91 -26.62 -0.16 -1.26 16 26 C -0.12 -0.88 5.93 -26.59 -0.16 -1.03 16 27 C -0.04 -0.32 6.26 -27.37 -0.17 -0.49 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.98 6.85 -51.93 -0.36 1.62 16 30 H 0.03 0.65 8.08 -51.93 -0.42 0.24 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 36 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 37 H 0.39 4.91 6.80 -40.82 -0.28 4.63 16 38 H 0.17 1.41 6.97 -52.49 -0.37 1.04 16 39 H 0.09 1.33 6.94 -51.93 -0.36 0.97 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -31.83 374.18 -11.93 -43.76 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.21 Total: 3.13 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.69 Total: -5.21 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.25 Total: -52.82 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.47 Total: -0.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.83 -11.93 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028301784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.545 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds