Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48501 * 109.46741 * 269.99668 * 3 2 1 5 5 H 1.48495 * 109.47150 * 29.99560 * 3 2 1 6 6 H 1.48500 * 109.47244 * 149.99382 * 3 2 1 7 7 C 1.38815 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64844 * 13.57250 * 9 7 2 11 11 C 1.54910 * 104.83103 * 155.89531 * 10 9 7 12 12 C 1.55161 * 101.58155 * 37.01008 * 11 10 9 13 13 C 1.47022 * 125.64943 * 193.60525 * 9 7 2 14 14 H 1.09007 * 109.87985 * 300.45350 * 13 9 7 15 15 C 1.52996 * 109.88369 * 61.61492 * 13 9 7 16 16 N 1.46504 * 109.46993 * 182.38288 * 15 13 9 17 17 C 1.34775 * 119.99803 * 185.08916 * 16 15 13 18 18 O 1.21642 * 120.00297 * 0.02562 * 17 16 15 19 19 C 1.47195 * 120.00068 * 180.02562 * 17 16 15 20 20 C 1.35624 * 123.18752 * 0.02562 * 19 17 16 21 21 S 1.70262 * 110.84285 * 179.97438 * 20 19 17 22 22 C 1.75586 * 92.62710 * 359.97438 * 21 20 19 23 23 C 1.34006 * 110.59937 * 359.75899 * 22 21 20 24 24 C 1.52022 * 123.46176 * 179.68873 * 23 22 21 25 25 C 1.53057 * 108.81716 * 343.35272 * 24 23 22 26 26 C 1.53160 * 109.20464 * 50.44149 * 25 24 23 27 27 C 1.51611 * 125.04773 * 180.02562 * 22 21 20 28 28 H 0.96999 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.08993 * 110.36495 * 37.05646 * 10 9 7 30 30 H 1.09001 * 110.46026 * 274.77970 * 10 9 7 31 31 H 1.08998 * 111.00734 * 278.93684 * 11 10 9 32 32 H 1.08997 * 111.00645 * 155.08192 * 11 10 9 33 33 H 1.08998 * 110.71740 * 206.13374 * 12 11 10 34 34 H 1.09000 * 110.71866 * 82.86100 * 12 11 10 35 35 H 1.08998 * 109.47299 * 302.38027 * 15 13 9 36 36 H 1.08996 * 109.47453 * 62.38172 * 15 13 9 37 37 H 0.97003 * 120.00271 * 5.09280 * 16 15 13 38 38 H 1.07998 * 124.57818 * 359.96621 * 20 19 17 39 39 H 1.09001 * 109.73134 * 223.45308 * 24 23 22 40 40 H 1.09001 * 109.51218 * 103.11883 * 24 23 22 41 41 H 1.08999 * 109.51344 * 290.52492 * 25 24 23 42 42 H 1.08996 * 109.51289 * 170.36100 * 25 24 23 43 43 H 1.09001 * 109.54108 * 169.75437 * 26 25 24 44 44 H 1.09001 * 109.54061 * 49.49744 * 26 25 24 45 45 H 1.09002 * 109.59715 * 283.14785 * 27 22 21 46 46 H 1.08996 * 109.59790 * 43.61346 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1125 -2.5500 -0.2811 11 6 -0.2596 -4.0145 -0.7640 12 6 0.7665 -4.7456 0.1416 13 6 1.9026 -3.7107 0.2821 14 1 2.6944 -3.9298 -0.4344 15 6 2.4619 -3.7420 1.7058 16 7 3.0848 -5.0440 1.9572 17 6 3.5569 -5.3394 3.1845 18 8 3.4654 -4.5252 4.0836 19 6 4.1833 -6.6473 3.4370 20 6 4.3194 -7.6017 2.4831 21 16 5.0855 -8.9848 3.1150 22 6 5.2345 -8.2714 4.7125 23 6 4.7191 -7.0345 4.7265 24 6 4.6889 -6.1530 5.9646 25 6 4.9297 -7.0262 7.1984 26 6 6.1758 -7.8872 6.9708 27 6 5.8631 -8.9500 5.9138 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4258 -1.8592 -1.0638 30 1 -0.6986 -2.3882 0.6236 31 1 0.0111 -4.1082 -1.8157 32 1 -1.2696 -4.3845 -0.5877 33 1 1.1290 -5.6531 -0.3412 34 1 0.3295 -4.9729 1.1139 35 1 3.2067 -2.9546 1.8210 36 1 1.6521 -3.5831 2.4179 37 1 3.1575 -5.6934 1.2403 38 1 3.9867 -7.4985 1.4609 39 1 3.7172 -5.6658 6.0459 40 1 5.4716 -5.3978 5.8931 41 1 4.0664 -7.6712 7.3621 42 1 5.0808 -6.3903 8.0706 43 1 6.4585 -8.3735 7.9044 44 1 6.9952 -7.2579 6.6233 45 1 5.1679 -9.6814 6.3258 46 1 6.7846 -9.4477 5.6119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028301784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = -20.114753 kcal Electronic energy + Delta-G solvation = -26340.875610 eV Core-core repulsion = 22741.728417 eV Total energy + Delta-G solvation = -3599.147193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17045 -39.68743 -38.98406 -36.08493 -35.64376 -34.41241 -31.70382 -31.53081 -30.80560 -29.60964 -26.89912 -26.25621 -24.86295 -24.22440 -22.85270 -22.02217 -21.32127 -20.80524 -19.21563 -18.90217 -18.45375 -17.85570 -17.21658 -16.57849 -16.37176 -16.02075 -15.70873 -15.45078 -15.28105 -14.90833 -14.79392 -14.65588 -14.21908 -14.02493 -13.89762 -13.68098 -13.62442 -13.40836 -13.12276 -12.99366 -12.89731 -12.67360 -12.50753 -12.37446 -12.05524 -11.88991 -11.77167 -11.72344 -11.63039 -11.50531 -11.43379 -11.25804 -10.85916 -10.70193 -10.16021 -9.56820 -9.21598 -8.89700 -7.90428 -5.28200 -0.21901 0.59135 0.93644 0.94453 1.42091 1.44580 1.52811 2.13722 2.31673 2.48145 3.28756 3.58589 3.68464 3.84426 3.90250 3.95167 4.01789 4.04632 4.10524 4.23055 4.26850 4.34835 4.42017 4.51906 4.59321 4.62680 4.69528 4.70020 4.89779 4.92692 4.96051 4.99053 5.01320 5.09855 5.11461 5.17891 5.20455 5.33158 5.34533 5.43557 5.44469 5.53813 5.60595 5.64418 5.76078 6.20675 6.55678 7.06696 7.22659 7.73638 8.39116 9.20143 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.002709 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.444564 B =10335.056317 C =11337.388046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.053 0.947 15 C 0.132 3.868 16 N -0.702 5.702 17 C 0.564 3.436 18 O -0.582 6.582 19 C -0.175 4.175 20 C -0.211 4.211 21 S 0.250 5.750 22 C -0.212 4.212 23 C -0.083 4.083 24 C -0.054 4.054 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.044 4.044 28 H 0.248 0.752 29 H 0.039 0.961 30 H -0.011 1.011 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.412 0.588 38 H 0.194 0.806 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -25.946 7.558 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.006 3.994 16 N -0.355 5.355 17 C 0.351 3.649 18 O -0.464 6.464 19 C -0.193 4.193 20 C -0.349 4.349 21 S 0.520 5.480 22 C -0.329 4.329 23 C -0.093 4.093 24 C -0.093 4.093 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.249 0.751 38 H 0.211 0.789 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.743 -26.548 7.483 29.978 hybrid contribution -0.529 3.213 0.217 3.263 sum 11.213 -23.335 7.700 27.011 Atomic orbital electron populations 1.70139 1.06269 1.25410 1.57548 1.25679 0.96540 1.01010 1.02148 0.85174 0.77622 0.79467 0.77673 1.20684 1.22104 1.19917 1.19299 0.90727 0.83637 1.43291 0.90614 1.44756 1.06272 1.01901 1.80570 1.21291 0.83931 0.93656 0.96371 1.22871 0.99525 0.95238 0.99464 1.22599 0.95108 0.97397 0.99954 1.21334 0.95991 0.86787 0.91745 0.92945 1.21685 0.95528 0.83490 0.98736 1.45686 1.60055 1.18047 1.11667 1.18227 0.77669 0.86726 0.82305 1.90752 1.59160 1.51420 1.45069 1.20029 1.08676 0.95286 0.95306 1.25804 1.05172 0.99296 1.04649 1.82572 1.53059 1.13009 0.99337 1.25101 1.08475 0.98094 1.01229 1.20469 0.99526 0.95204 0.94137 1.20420 1.01598 0.96114 0.91189 1.21612 0.99136 0.98395 0.96370 1.21588 0.97133 0.97087 0.99398 1.20469 1.00753 0.97275 0.89835 0.94276 0.94249 0.99246 0.90924 0.89912 0.87573 0.91927 0.94916 0.94620 0.75060 0.78863 0.92367 0.92208 0.91449 0.90667 0.88721 0.92159 0.88713 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.81 10.53 21.65 0.23 -57.58 16 2 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 3 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.24 -13.63 9.77 84.03 0.82 -12.81 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -31.14 3.13 -668.26 -2.09 -33.23 16 10 C 0.17 8.50 5.43 86.85 0.47 8.97 16 11 C -0.13 -4.61 7.09 31.99 0.23 -4.38 16 12 C -0.11 -3.46 6.10 31.78 0.19 -3.27 16 13 C 0.15 5.80 3.22 45.34 0.15 5.95 16 14 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 15 C 0.13 5.35 5.07 86.38 0.44 5.79 16 16 N -0.70 -21.84 5.29 -466.59 -2.47 -24.31 16 17 C 0.56 19.46 7.79 86.60 0.67 20.14 16 18 O -0.58 -25.42 14.60 -4.16 -0.06 -25.48 16 19 C -0.17 -4.65 5.97 -19.82 -0.12 -4.76 16 20 C -0.21 -3.83 10.35 67.21 0.70 -3.13 16 21 S 0.25 3.40 22.99 -56.49 -1.30 2.10 16 22 C -0.21 -3.80 6.32 25.01 0.16 -3.65 16 23 C -0.08 -2.08 5.95 -18.70 -0.11 -2.19 16 24 C -0.05 -1.42 5.07 30.29 0.15 -1.26 16 25 C -0.12 -2.09 5.91 30.67 0.18 -1.91 16 26 C -0.11 -1.45 5.93 30.69 0.18 -1.27 16 27 C -0.04 -0.52 6.26 30.18 0.19 -0.33 16 28 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.04 2.18 6.85 -2.39 -0.02 2.17 16 30 H -0.01 -0.58 8.08 -2.39 -0.02 -0.60 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.97 7.81 -2.39 -0.02 1.95 16 35 H 0.03 1.53 7.92 -2.39 -0.02 1.51 16 36 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 37 H 0.41 9.32 6.80 -92.71 -0.63 8.69 16 38 H 0.19 2.36 6.97 -2.91 -0.02 2.34 16 39 H 0.06 1.88 6.94 -2.39 -0.02 1.86 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.30 374.18 1.45 -74.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.35 Total: 15.66 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.76 Total: -1.16 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.33 Total: -115.12 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.30 Total: 2.10 kcal Total: -76.30 1.45 -74.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028301784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.733 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds