Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99819 * 2 1 4 4 H 1.48497 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47063 * 300.00234 * 3 2 1 6 6 H 1.48504 * 109.47089 * 59.99655 * 3 2 1 7 7 C 1.38809 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.47418 * 125.64777 * 345.74651 * 9 7 2 11 11 C 1.54911 * 104.83191 * 204.15023 * 10 9 7 12 12 C 1.55153 * 101.58228 * 322.99126 * 11 10 9 13 13 C 1.47023 * 125.64414 * 165.77272 * 9 7 2 14 14 H 1.09000 * 110.01413 * 59.43254 * 13 9 7 15 15 C 1.52994 * 109.88177 * 298.33538 * 13 9 7 16 16 N 1.46503 * 109.46993 * 176.74244 * 15 13 9 17 17 C 1.34780 * 120.00004 * 174.97297 * 16 15 13 18 18 O 1.21272 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99787 * 179.97438 * 17 16 15 20 20 H 1.09001 * 110.67329 * 304.30393 * 19 17 16 21 21 C 1.54705 * 110.75132 * 67.52541 * 19 17 16 22 22 C 1.51655 * 101.93474 * 143.78340 * 21 19 17 23 23 C 1.37803 * 132.14842 * 164.57721 * 22 21 19 24 24 C 1.38316 * 120.02318 * 180.37515 * 23 22 21 25 25 C 1.38306 * 119.78340 * 0.02562 * 24 23 22 26 26 C 1.38103 * 120.31927 * 359.82659 * 25 24 23 27 27 F 1.35101 * 119.89761 * 180.02562 * 26 25 24 28 28 C 1.38792 * 107.04632 * 344.61201 * 22 21 19 29 29 O 1.36188 * 111.25010 * 358.93734 * 28 22 21 30 30 H 0.97000 * 120.00575 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.36869 * 85.31132 * 10 9 7 32 32 H 1.09006 * 110.37041 * 322.98617 * 10 9 7 33 33 H 1.08998 * 111.00471 * 204.91521 * 11 10 9 34 34 H 1.09001 * 111.00411 * 81.06195 * 11 10 9 35 35 H 1.08997 * 110.72477 * 277.13925 * 12 11 10 36 36 H 1.08997 * 110.87644 * 153.93117 * 12 11 10 37 37 H 1.08991 * 109.47648 * 56.74430 * 15 13 9 38 38 H 1.09007 * 109.47184 * 296.73554 * 15 13 9 39 39 H 0.97002 * 120.00192 * 354.98087 * 16 15 13 40 40 H 1.09008 * 110.93841 * 261.93808 * 21 19 17 41 41 H 1.08997 * 110.94240 * 25.62295 * 21 19 17 42 42 H 1.08003 * 119.98651 * 0.35381 * 23 22 21 43 43 H 1.07998 * 120.11148 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.84048 * 179.81165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1096 -2.5518 0.2927 11 6 -0.2519 -4.0191 0.7687 12 6 0.7657 -4.7449 -0.1505 13 6 1.9004 -3.7089 -0.2959 14 1 2.7000 -3.9335 0.4100 15 6 2.4463 -3.7321 -1.7250 16 7 3.0856 -5.0249 -1.9825 17 6 3.5512 -5.3129 -3.2141 18 8 3.4414 -4.5018 -4.1089 19 6 4.2093 -6.6425 -3.4789 20 1 5.0407 -6.8037 -2.7927 21 6 3.1811 -7.7936 -3.3741 22 6 3.6546 -8.7371 -4.4629 23 6 3.3694 -10.0586 -4.7299 24 6 3.9609 -10.6900 -5.8090 25 6 4.8387 -9.9909 -6.6174 26 6 5.1241 -8.6656 -6.3541 27 9 5.9825 -7.9906 -7.1496 28 6 4.5278 -8.0214 -5.2701 29 8 4.6507 -6.7337 -4.8441 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7026 -2.3855 -0.6066 32 1 -0.4157 -1.8655 1.0823 33 1 -1.2634 -4.3882 0.5999 34 1 0.0288 -4.1186 1.8173 35 1 0.3197 -4.9669 -1.1200 36 1 1.1338 -5.6561 0.3208 37 1 3.1784 -2.9340 -1.8473 38 1 1.6273 -3.5851 -2.4292 39 1 3.1737 -5.6736 -1.2667 40 1 3.2301 -8.2719 -2.3958 41 1 2.1727 -7.4352 -3.5808 42 1 2.6839 -10.6016 -4.0959 43 1 3.7386 -11.7257 -6.0193 44 1 5.3034 -10.4838 -7.4585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028326368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = -79.112227 kcal Electronic energy + Delta-G solvation = -28215.706628 eV Core-core repulsion = 24047.787936 eV Total energy + Delta-G solvation = -4167.918692 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.91867 -42.48543 -40.60248 -39.26998 -38.31291 -35.90040 -34.45988 -33.68220 -31.64794 -31.18554 -30.78969 -29.83416 -26.82835 -26.17595 -24.82758 -23.55907 -22.84037 -22.10335 -21.62602 -21.14423 -19.16893 -18.78364 -18.55216 -18.30266 -17.82763 -17.32521 -16.82157 -16.65132 -16.51686 -16.16612 -15.98712 -15.68872 -15.50932 -15.04283 -14.65914 -14.40163 -14.23443 -14.01500 -13.97469 -13.77925 -13.66048 -13.42420 -13.05829 -12.94367 -12.87432 -12.75685 -12.70068 -12.38968 -12.10475 -12.00085 -11.88126 -11.72764 -11.47925 -11.37440 -11.03474 -10.70540 -10.19831 -9.80515 -9.28371 -8.87329 -7.90600 -5.27685 0.07239 0.12755 1.33893 1.41307 1.44309 1.50949 1.53298 2.32253 2.46706 2.54599 3.08334 3.21163 3.29654 3.43770 3.67580 3.79823 3.85861 3.91961 3.97013 3.99855 4.16547 4.24469 4.28718 4.36960 4.44859 4.55112 4.63246 4.72221 4.74116 4.93767 4.95497 5.02262 5.07213 5.15744 5.20621 5.25933 5.31266 5.34829 5.47324 5.49064 5.56511 5.67715 5.79109 6.00192 6.22045 6.45625 7.07659 7.12701 7.75353 8.40081 9.20251 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.002431 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.555105 B =11513.592414 C =12613.595703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.058 0.942 15 C 0.128 3.872 16 N -0.690 5.690 17 C 0.510 3.490 18 O -0.582 6.582 19 C 0.064 3.936 20 H 0.148 0.852 21 C -0.088 4.088 22 C -0.146 4.146 23 C -0.069 4.069 24 C -0.106 4.106 25 C -0.119 4.119 26 C 0.046 3.954 27 F -0.157 7.157 28 C 0.033 3.967 29 O -0.312 6.312 30 H 0.247 0.753 31 H -0.011 1.011 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.036 0.964 39 H 0.423 0.577 40 H 0.156 0.844 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -29.826 -3.779 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.344 5.344 17 C 0.296 3.704 18 O -0.461 6.461 19 C 0.005 3.995 20 H 0.166 0.834 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.137 4.137 26 C 0.027 3.973 27 F -0.136 7.136 28 C -0.012 4.012 29 O -0.226 6.226 30 H 0.057 0.943 31 H 0.007 0.993 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.261 0.739 40 H 0.174 0.826 41 H 0.114 0.886 42 H 0.190 0.810 43 H 0.197 0.803 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.098 -28.774 -4.516 29.758 hybrid contribution 0.568 2.167 -0.392 2.274 sum 6.666 -26.608 -4.908 27.865 Atomic orbital electron populations 1.70139 1.06235 1.25276 1.57686 1.25662 0.96506 1.00963 1.02316 0.85154 0.78372 0.80039 0.76676 1.19156 1.22473 1.21412 1.19336 0.90767 0.83649 1.42911 0.90485 1.44771 1.06642 1.02142 1.80009 1.21296 0.83978 0.93850 0.96255 1.22863 0.99735 0.95003 0.99534 1.22624 0.94848 0.97463 0.99992 1.21384 0.96346 0.86729 0.91453 0.92424 1.21780 0.95427 0.83643 0.98979 1.45592 1.59070 1.18907 1.10862 1.20675 0.78508 0.88426 0.82813 1.90758 1.58017 1.51283 1.46047 1.23439 0.99567 0.93241 0.83232 0.83444 1.21885 0.98357 0.91043 1.01198 1.20902 0.98549 0.96380 0.98878 1.20894 0.98893 0.91189 0.97650 1.21456 0.95465 1.01970 0.93490 1.21304 1.00105 0.89919 1.02376 1.17597 0.95814 0.91935 0.91977 1.91450 1.68458 1.80759 1.72905 1.20010 0.98793 0.84895 0.97531 1.86975 1.82420 1.24474 1.28707 0.94347 0.99292 0.94601 0.89948 0.90958 0.91632 0.86863 0.94955 0.94535 0.73910 0.82572 0.88574 0.80984 0.80281 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.10 10.56 21.65 0.23 -56.87 16 2 C -0.06 -3.48 5.47 84.86 0.46 -3.02 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.12 9.75 84.03 0.82 -12.30 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -29.89 3.13 -668.27 -2.09 -31.98 16 10 C 0.17 8.11 5.42 86.86 0.47 8.59 16 11 C -0.13 -4.27 7.08 31.99 0.23 -4.04 16 12 C -0.11 -2.98 6.14 31.78 0.20 -2.78 16 13 C 0.15 5.28 3.21 45.34 0.15 5.42 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.13 4.75 5.08 86.38 0.44 5.19 16 16 N -0.69 -17.70 5.34 -463.07 -2.47 -20.17 16 17 C 0.51 15.55 7.13 87.66 0.62 16.17 16 18 O -0.58 -25.68 16.58 15.13 0.25 -25.43 16 19 C 0.06 1.39 4.04 30.43 0.12 1.51 16 20 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 21 C -0.09 -1.17 6.63 30.73 0.20 -0.96 16 22 C -0.15 -2.34 6.27 -19.53 -0.12 -2.46 16 23 C -0.07 -0.63 10.03 22.19 0.22 -0.40 16 24 C -0.11 -0.86 10.07 22.30 0.22 -0.64 16 25 C -0.12 -1.64 9.99 22.25 0.22 -1.41 16 26 C 0.05 1.08 7.32 22.54 0.16 1.24 16 27 F -0.16 -4.45 17.27 44.97 0.78 -3.67 16 28 C 0.03 0.82 7.02 22.70 0.16 0.98 16 29 O -0.31 -9.67 10.41 -77.56 -0.81 -10.47 16 30 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 31 H -0.01 -0.59 8.07 -2.39 -0.02 -0.61 16 32 H 0.04 1.94 6.90 -2.38 -0.02 1.92 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.77 7.80 -2.39 -0.02 1.75 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.03 1.43 7.90 -2.39 -0.02 1.41 16 38 H 0.04 1.58 8.06 -2.38 -0.02 1.56 16 39 H 0.42 6.47 8.36 -92.71 -0.78 5.69 16 40 H 0.16 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.10 1.44 7.92 -2.39 -0.02 1.42 16 42 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 44 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -86.27 368.96 2.75 -83.52 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.25 Total: 5.25 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 4.58 Total: 11.09 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.33 Total: -109.03 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.56 Total: -35.91 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.78 Total: -3.67 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -86.27 2.75 -83.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.408 kcal (2) G-P(sol) polarization free energy of solvation -86.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds