Wall clock time and date at job start Tue Mar 31 2020 18:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00265 * 2 1 4 4 H 1.48493 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46902 * 300.00614 * 3 2 1 6 6 H 1.48507 * 109.46729 * 59.99784 * 3 2 1 7 7 C 1.38815 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.65206 * 345.75572 * 9 7 2 11 11 C 1.54908 * 104.83626 * 204.18040 * 10 9 7 12 12 C 1.55161 * 101.57971 * 322.98861 * 11 10 9 13 13 C 1.47024 * 125.64843 * 165.81357 * 9 7 2 14 14 H 1.09001 * 110.01356 * 59.39905 * 13 9 7 15 15 C 1.53006 * 109.88179 * 298.30962 * 13 9 7 16 16 N 1.46495 * 109.47267 * 176.74255 * 15 13 9 17 17 C 1.34774 * 120.00007 * 174.97414 * 16 15 13 18 18 O 1.21282 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00077 * 179.97438 * 17 16 15 20 20 H 1.09005 * 110.66550 * 53.22592 * 19 17 16 21 21 C 1.54706 * 110.75282 * 289.80163 * 19 17 16 22 22 C 1.51645 * 101.93626 * 266.95376 * 21 19 17 23 23 C 1.37806 * 132.15093 * 164.14413 * 22 21 19 24 24 C 1.38321 * 120.02726 * 180.89174 * 23 22 21 25 25 C 1.38295 * 119.78040 * 0.27267 * 24 23 22 26 26 C 1.38109 * 120.32065 * 359.32396 * 25 24 23 27 27 F 1.35095 * 119.89720 * 180.23807 * 26 25 24 28 28 C 1.38797 * 107.04937 * 344.66062 * 22 21 19 29 29 O 1.36194 * 111.24425 * 358.85788 * 28 22 21 30 30 H 0.96994 * 119.99992 * 0.02562 * 1 2 3 31 31 H 1.08993 * 110.37109 * 85.33784 * 10 9 7 32 32 H 1.09008 * 110.45645 * 323.06338 * 10 9 7 33 33 H 1.09002 * 111.00473 * 204.91559 * 11 10 9 34 34 H 1.08999 * 111.03960 * 81.07392 * 11 10 9 35 35 H 1.09003 * 110.71821 * 277.14055 * 12 11 10 36 36 H 1.08991 * 110.72455 * 153.86468 * 12 11 10 37 37 H 1.09001 * 109.46988 * 56.73704 * 15 13 9 38 38 H 1.09000 * 109.46615 * 296.74000 * 15 13 9 39 39 H 0.97002 * 120.00225 * 354.96194 * 16 15 13 40 40 H 1.08998 * 110.93667 * 148.79071 * 21 19 17 41 41 H 1.08997 * 110.93226 * 25.11027 * 21 19 17 42 42 H 1.07998 * 119.98662 * 0.91546 * 23 22 21 43 43 H 1.07996 * 120.11130 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.84073 * 179.57916 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1097 -2.5518 0.2925 11 6 -0.2520 -4.0188 0.7693 12 6 0.7659 -4.7451 -0.1493 13 6 1.9003 -3.7091 -0.2951 14 1 2.6999 -3.9332 0.4110 15 6 2.4466 -3.7331 -1.7241 16 7 3.0859 -5.0259 -1.9809 17 6 3.5517 -5.3146 -3.2122 18 8 3.4413 -4.5042 -4.1078 19 6 4.2099 -6.6443 -3.4762 20 1 3.5632 -7.4631 -3.1607 21 6 5.5853 -6.7245 -2.7725 22 6 6.5247 -6.2521 -3.8652 23 6 7.8322 -5.8176 -3.8368 24 6 8.4552 -5.4204 -5.0061 25 6 7.7599 -5.4557 -6.2011 26 6 6.4521 -5.8985 -6.2339 27 9 5.7825 -5.9340 -7.4067 28 6 5.8190 -6.3042 -5.0592 29 8 4.5556 -6.7747 -4.8656 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7026 -2.3861 -0.6069 32 1 -0.4178 -1.8651 1.0810 33 1 -1.2635 -4.3881 0.6005 34 1 0.0280 -4.1183 1.8180 35 1 0.3199 -4.9676 -1.1188 36 1 1.1331 -5.6549 0.3254 37 1 3.1787 -2.9349 -1.8467 38 1 1.6278 -3.5864 -2.4285 39 1 3.1741 -5.6742 -1.2647 40 1 5.8134 -7.7491 -2.4788 41 1 5.6219 -6.0568 -1.9118 42 1 8.3708 -5.7876 -2.9012 43 1 9.4796 -5.0793 -4.9853 44 1 8.2432 -5.1394 -7.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028326371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:03 Heat of formation + Delta-G solvation = -56.719418 kcal Electronic energy + Delta-G solvation = -28635.045664 eV Core-core repulsion = 24468.097997 eV Total energy + Delta-G solvation = -4166.947667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.90707 -41.68082 -39.20051 -37.81356 -37.29658 -34.42280 -32.90470 -32.48345 -30.44218 -30.01395 -29.51067 -28.48391 -25.40012 -24.60222 -23.51012 -22.78239 -22.09948 -20.68934 -20.17543 -19.64118 -18.15199 -17.78230 -17.36970 -16.74646 -16.67759 -15.88858 -15.82709 -15.36580 -15.29319 -14.85254 -14.59275 -14.48102 -13.95627 -13.78148 -13.61754 -13.49299 -13.12994 -13.05322 -12.67031 -12.19825 -12.10049 -12.01915 -11.93167 -11.80600 -11.74371 -11.48759 -11.36210 -10.98006 -10.83769 -10.30716 -10.13182 -10.00216 -9.89998 -9.79643 -9.69825 -9.03130 -8.78849 -8.62888 -8.39653 -6.89097 -5.80819 -3.17785 0.82632 0.92417 2.50786 2.76416 3.24085 3.31526 3.37573 3.43788 3.45451 3.92333 4.00189 4.22845 4.43531 4.54995 4.61241 4.80525 4.88469 4.93228 5.03502 5.19623 5.28525 5.32874 5.34757 5.45182 5.57316 5.63560 5.75481 5.79144 5.92338 5.98464 6.04383 6.06629 6.17614 6.18561 6.39987 6.48290 6.53193 6.62710 6.73542 6.81053 6.98834 7.47476 7.56222 7.61490 7.75412 8.20710 8.30468 9.13052 9.73622 10.40253 11.31048 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002937 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.304591 B = 9531.150150 C =10566.889915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.153 3.847 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.716 5.716 17 C 0.489 3.511 18 O -0.519 6.519 19 C 0.062 3.938 20 H 0.144 0.856 21 C -0.098 4.098 22 C -0.147 4.147 23 C -0.078 4.078 24 C -0.120 4.120 25 C -0.122 4.122 26 C 0.088 3.912 27 F -0.134 7.134 28 C 0.081 3.919 29 O -0.267 6.267 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 -17.736 -3.905 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.369 5.369 17 C 0.272 3.728 18 O -0.394 6.394 19 C 0.001 3.999 20 H 0.162 0.838 21 C -0.135 4.135 22 C -0.148 4.148 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.140 4.140 26 C 0.068 3.932 27 F -0.112 7.112 28 C 0.035 3.965 29 O -0.179 6.179 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.134 -16.954 -4.755 21.967 hybrid contribution 0.263 0.679 0.100 0.735 sum 13.397 -16.275 -4.656 21.587 Atomic orbital electron populations 1.69943 1.05035 1.25274 1.55767 1.24914 0.95680 0.97899 1.01275 0.86077 0.78916 0.83655 0.77306 1.20372 1.21556 1.21645 1.19023 0.90413 0.82161 1.44790 0.90588 1.44495 1.06151 1.00901 1.79705 1.21467 0.84693 0.90255 0.98914 1.23007 0.97548 0.99586 0.98584 1.22616 0.97117 0.96942 0.99791 1.21126 0.94493 0.88180 0.91786 0.94474 1.22318 0.97242 0.82493 0.99560 1.46074 1.60148 1.20155 1.10545 1.20733 0.79820 0.88685 0.83570 1.90778 1.55785 1.48947 1.43869 1.23445 0.97835 0.97968 0.80607 0.83837 1.21809 0.90085 1.03995 0.97617 1.20625 0.95780 1.04466 0.93928 1.20374 0.92577 0.97598 0.99108 1.20901 1.00429 1.01315 0.91131 1.20931 0.91758 1.00935 1.00404 1.16974 0.91496 1.05271 0.79466 1.91510 1.80280 1.94425 1.45026 1.19511 0.85848 0.97019 0.94109 1.86997 1.28078 1.76058 1.26764 0.93592 0.95626 0.90826 0.92313 0.92272 0.91806 0.92354 0.91411 0.91468 0.77036 0.87417 0.87824 0.84842 0.84289 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 10.56 55.49 0.59 -25.83 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.36 9.75 -15.06 -0.15 -6.50 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.28 3.13 -162.57 -0.51 -14.79 16 10 C 0.17 4.01 5.42 -2.53 -0.01 4.00 16 11 C -0.15 -2.63 7.09 -24.58 -0.17 -2.80 16 12 C -0.13 -1.99 6.14 -24.89 -0.15 -2.15 16 13 C 0.15 2.87 3.21 -66.95 -0.21 2.66 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 15 C 0.11 2.03 5.08 -4.04 -0.02 2.01 16 16 N -0.72 -9.91 5.34 -60.29 -0.32 -10.23 16 17 C 0.49 7.53 7.03 -10.98 -0.08 7.45 16 18 O -0.52 -10.93 16.45 -13.48 -0.22 -11.15 16 19 C 0.06 0.69 4.11 -26.98 -0.11 0.58 16 20 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.10 -0.83 6.64 -26.52 -0.18 -1.01 16 22 C -0.15 -1.63 6.26 -104.11 -0.65 -2.28 16 23 C -0.08 -0.71 10.03 -39.71 -0.40 -1.11 16 24 C -0.12 -1.03 10.07 -39.53 -0.40 -1.42 16 25 C -0.12 -1.24 9.99 -39.61 -0.40 -1.64 16 26 C 0.09 1.20 7.32 -39.17 -0.29 0.91 16 27 F -0.13 -2.02 17.26 2.25 0.04 -1.98 16 28 C 0.08 1.14 6.81 -38.91 -0.26 0.87 16 29 O -0.27 -3.92 10.44 -39.39 -0.41 -4.33 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.07 1.92 6.90 -51.92 -0.36 1.56 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.01 7.80 -51.93 -0.40 0.61 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.46 7.90 -51.93 -0.41 1.05 16 38 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 39 H 0.40 3.91 8.36 -40.82 -0.34 3.57 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.79 7.91 -51.93 -0.41 0.38 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -35.07 368.61 -10.00 -45.07 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.11 Total: 1.28 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.58 Total: -0.54 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.24 Total: -50.84 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.63 Total: -15.48 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.07 -10.00 -45.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.649 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds