Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00265 * 2 1 4 4 H 1.48493 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46902 * 300.00614 * 3 2 1 6 6 H 1.48507 * 109.46729 * 59.99784 * 3 2 1 7 7 C 1.38815 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.65206 * 345.75572 * 9 7 2 11 11 C 1.54908 * 104.83626 * 204.18040 * 10 9 7 12 12 C 1.55161 * 101.57971 * 322.98861 * 11 10 9 13 13 C 1.47024 * 125.64843 * 165.81357 * 9 7 2 14 14 H 1.09001 * 110.01356 * 59.39905 * 13 9 7 15 15 C 1.53006 * 109.88179 * 298.30962 * 13 9 7 16 16 N 1.46495 * 109.47267 * 176.74255 * 15 13 9 17 17 C 1.34774 * 120.00007 * 174.97414 * 16 15 13 18 18 O 1.21282 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00077 * 179.97438 * 17 16 15 20 20 H 1.09005 * 110.66550 * 53.22592 * 19 17 16 21 21 C 1.54706 * 110.75282 * 289.80163 * 19 17 16 22 22 C 1.51645 * 101.93626 * 266.95376 * 21 19 17 23 23 C 1.37806 * 132.15093 * 164.14413 * 22 21 19 24 24 C 1.38321 * 120.02726 * 180.89174 * 23 22 21 25 25 C 1.38295 * 119.78040 * 0.27267 * 24 23 22 26 26 C 1.38109 * 120.32065 * 359.32396 * 25 24 23 27 27 F 1.35095 * 119.89720 * 180.23807 * 26 25 24 28 28 C 1.38797 * 107.04937 * 344.66062 * 22 21 19 29 29 O 1.36194 * 111.24425 * 358.85788 * 28 22 21 30 30 H 0.96994 * 119.99992 * 0.02562 * 1 2 3 31 31 H 1.08993 * 110.37109 * 85.33784 * 10 9 7 32 32 H 1.09008 * 110.45645 * 323.06338 * 10 9 7 33 33 H 1.09002 * 111.00473 * 204.91559 * 11 10 9 34 34 H 1.08999 * 111.03960 * 81.07392 * 11 10 9 35 35 H 1.09003 * 110.71821 * 277.14055 * 12 11 10 36 36 H 1.08991 * 110.72455 * 153.86468 * 12 11 10 37 37 H 1.09001 * 109.46988 * 56.73704 * 15 13 9 38 38 H 1.09000 * 109.46615 * 296.74000 * 15 13 9 39 39 H 0.97002 * 120.00225 * 354.96194 * 16 15 13 40 40 H 1.08998 * 110.93667 * 148.79071 * 21 19 17 41 41 H 1.08997 * 110.93226 * 25.11027 * 21 19 17 42 42 H 1.07998 * 119.98662 * 0.91546 * 23 22 21 43 43 H 1.07996 * 120.11130 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.84073 * 179.57916 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1097 -2.5518 0.2925 11 6 -0.2520 -4.0188 0.7693 12 6 0.7659 -4.7451 -0.1493 13 6 1.9003 -3.7091 -0.2951 14 1 2.6999 -3.9332 0.4110 15 6 2.4466 -3.7331 -1.7241 16 7 3.0859 -5.0259 -1.9809 17 6 3.5517 -5.3146 -3.2122 18 8 3.4413 -4.5042 -4.1078 19 6 4.2099 -6.6443 -3.4762 20 1 3.5632 -7.4631 -3.1607 21 6 5.5853 -6.7245 -2.7725 22 6 6.5247 -6.2521 -3.8652 23 6 7.8322 -5.8176 -3.8368 24 6 8.4552 -5.4204 -5.0061 25 6 7.7599 -5.4557 -6.2011 26 6 6.4521 -5.8985 -6.2339 27 9 5.7825 -5.9340 -7.4067 28 6 5.8190 -6.3042 -5.0592 29 8 4.5556 -6.7747 -4.8656 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7026 -2.3861 -0.6069 32 1 -0.4178 -1.8651 1.0810 33 1 -1.2635 -4.3881 0.6005 34 1 0.0280 -4.1183 1.8180 35 1 0.3199 -4.9676 -1.1188 36 1 1.1331 -5.6549 0.3254 37 1 3.1787 -2.9349 -1.8467 38 1 1.6278 -3.5864 -2.4285 39 1 3.1741 -5.6742 -1.2647 40 1 5.8134 -7.7491 -2.4788 41 1 5.6219 -6.0568 -1.9118 42 1 8.3708 -5.7876 -2.9012 43 1 9.4796 -5.0793 -4.9853 44 1 8.2432 -5.1394 -7.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028326371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = -80.221238 kcal Electronic energy + Delta-G solvation = -28636.064779 eV Core-core repulsion = 24468.097997 eV Total energy + Delta-G solvation = -4167.966782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93734 -42.58335 -40.45766 -39.24843 -38.29455 -35.88127 -34.46311 -33.65545 -31.61973 -31.16328 -30.81099 -29.83397 -26.84875 -26.18223 -24.79995 -23.64924 -22.88670 -22.11010 -21.62328 -21.18461 -19.34681 -18.76473 -18.49931 -18.24969 -17.66499 -17.20028 -16.89986 -16.67321 -16.52803 -16.13733 -15.92471 -15.74977 -15.46382 -15.11247 -14.74212 -14.42632 -14.13273 -14.06631 -13.97811 -13.67451 -13.56750 -13.42350 -13.02409 -12.87501 -12.84969 -12.77007 -12.70005 -12.62289 -12.24000 -11.99752 -11.88421 -11.73699 -11.48816 -11.39540 -11.01202 -10.70660 -10.17503 -9.81024 -9.28065 -8.87542 -7.90357 -5.27765 0.05450 0.10109 1.39622 1.41963 1.44675 1.53351 1.78280 2.18548 2.47388 2.52778 3.09848 3.28066 3.29766 3.47375 3.54529 3.79115 3.84760 3.95599 3.98315 4.10517 4.17938 4.21305 4.27287 4.34181 4.44396 4.53632 4.65088 4.71962 4.73583 4.90720 4.95231 5.00450 5.03737 5.14295 5.20108 5.21428 5.31036 5.31956 5.44639 5.46682 5.56000 5.66120 5.77717 5.97877 6.21602 6.48699 7.07302 7.16999 7.75024 8.40269 9.20668 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002937 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.304591 B = 9531.150150 C =10566.889915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.150 3.850 14 H 0.061 0.939 15 C 0.129 3.871 16 N -0.693 5.693 17 C 0.485 3.515 18 O -0.586 6.586 19 C 0.064 3.936 20 H 0.190 0.810 21 C -0.086 4.086 22 C -0.155 4.155 23 C -0.077 4.077 24 C -0.111 4.111 25 C -0.126 4.126 26 C 0.044 3.956 27 F -0.156 7.156 28 C 0.040 3.960 29 O -0.298 6.298 30 H 0.247 0.753 31 H -0.013 1.013 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.422 0.578 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.236 -20.632 -1.636 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.078 0.922 15 C 0.002 3.998 16 N -0.347 5.347 17 C 0.271 3.729 18 O -0.466 6.466 19 C 0.005 3.995 20 H 0.207 0.793 21 C -0.123 4.123 22 C -0.156 4.156 23 C -0.095 4.095 24 C -0.129 4.129 25 C -0.144 4.144 26 C 0.024 3.976 27 F -0.135 7.135 28 C -0.005 4.005 29 O -0.211 6.211 30 H 0.056 0.944 31 H 0.005 0.995 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.260 0.740 40 H 0.169 0.831 41 H 0.136 0.864 42 H 0.187 0.813 43 H 0.194 0.806 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 15.913 -19.928 -2.445 25.618 hybrid contribution -0.508 1.561 -0.630 1.759 sum 15.405 -18.366 -3.074 24.168 Atomic orbital electron populations 1.70148 1.06331 1.25271 1.57686 1.25678 0.96482 1.01022 1.02253 0.85143 0.78447 0.79943 0.76655 1.18937 1.22568 1.21384 1.19353 0.90813 0.83591 1.42966 0.90323 1.44773 1.06565 1.02192 1.80060 1.21278 0.84077 0.93776 0.96197 1.22868 0.99652 0.95076 0.99582 1.22627 0.95038 0.97584 0.99823 1.21371 0.96242 0.86604 0.91552 0.92169 1.21720 0.95283 0.83981 0.98785 1.45687 1.58999 1.18764 1.11268 1.21713 0.78680 0.89827 0.82657 1.90755 1.58337 1.51516 1.45989 1.23768 0.99920 0.95896 0.79937 0.79305 1.21963 0.87029 1.06727 0.96566 1.21113 0.96735 1.04102 0.93627 1.20891 0.91990 0.95923 1.00712 1.21427 1.01787 0.99493 0.90166 1.21291 0.90623 1.00228 1.02270 1.17646 0.93106 1.07690 0.79152 1.91435 1.80980 1.94870 1.46229 1.19935 0.86256 0.98888 0.95440 1.86952 1.28985 1.76291 1.28833 0.94380 0.99495 0.94516 0.90128 0.90805 0.91990 0.86930 0.94989 0.95142 0.73962 0.83125 0.86447 0.81336 0.80591 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.56 21.65 0.23 -57.06 16 2 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 3 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.24 -13.11 9.75 84.03 0.82 -12.29 16 8 H 0.08 4.18 7.83 -2.92 -0.02 4.16 16 9 N -0.61 -30.04 3.13 -668.26 -2.09 -32.13 16 10 C 0.17 8.24 5.42 86.86 0.47 8.72 16 11 C -0.13 -4.40 7.09 31.99 0.23 -4.17 16 12 C -0.11 -3.14 6.14 31.78 0.20 -2.95 16 13 C 0.15 5.36 3.21 45.34 0.15 5.51 16 14 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.13 4.83 5.08 86.38 0.44 5.26 16 16 N -0.69 -17.69 5.34 -463.06 -2.47 -20.16 16 17 C 0.49 14.53 7.03 87.66 0.62 15.15 16 18 O -0.59 -25.76 16.45 15.17 0.25 -25.51 16 19 C 0.06 1.27 4.11 30.43 0.13 1.39 16 20 H 0.19 1.89 8.14 -2.38 -0.02 1.87 16 21 C -0.09 -1.10 6.64 30.73 0.20 -0.89 16 22 C -0.15 -3.05 6.26 -19.53 -0.12 -3.18 16 23 C -0.08 -1.14 10.03 22.19 0.22 -0.91 16 24 C -0.11 -1.58 10.07 22.30 0.22 -1.35 16 25 C -0.13 -2.48 9.99 22.25 0.22 -2.26 16 26 C 0.04 1.24 7.32 22.54 0.16 1.40 16 27 F -0.16 -5.12 17.26 44.97 0.78 -4.35 16 28 C 0.04 1.13 6.81 22.70 0.15 1.29 16 29 O -0.30 -8.75 10.44 -77.56 -0.81 -9.56 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H -0.01 -0.71 8.07 -2.39 -0.02 -0.73 16 32 H 0.04 2.00 6.90 -2.38 -0.02 1.98 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 1.78 7.80 -2.39 -0.02 1.76 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.03 1.42 7.90 -2.39 -0.02 1.40 16 38 H 0.03 1.36 8.06 -2.39 -0.02 1.34 16 39 H 0.42 6.37 8.36 -92.71 -0.78 5.60 16 40 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 1.20 7.91 -2.39 -0.02 1.18 16 42 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -87.07 368.61 2.74 -84.33 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.25 Total: 8.33 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.57 Total: 7.73 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.33 Total: -109.35 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.56 Total: -35.07 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -87.07 2.74 -84.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028326371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.109 kcal (2) G-P(sol) polarization free energy of solvation -87.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds