Wall clock time and date at job start Tue Mar 31 2020 18:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46846 * 5.50965 * 3 2 1 5 5 H 1.48497 * 109.47044 * 125.50928 * 3 2 1 6 6 H 1.48497 * 109.46952 * 245.51044 * 3 2 1 7 7 C 1.38817 * 120.00015 * 179.71797 * 2 1 3 8 8 H 1.07997 * 119.99939 * 344.59549 * 7 2 1 9 9 N 1.36934 * 119.99822 * 164.58539 * 7 2 1 10 10 C 1.47018 * 125.65081 * 350.98852 * 9 7 2 11 11 C 1.54336 * 107.26918 * 178.84311 * 10 9 7 12 12 C 1.55161 * 103.01729 * 338.14413 * 11 10 9 13 13 H 1.09001 * 111.03577 * 277.21523 * 12 11 10 14 14 C 1.52994 * 111.00369 * 153.37760 * 12 11 10 15 15 N 1.46501 * 109.47209 * 181.34919 * 14 12 11 16 16 C 1.34773 * 119.99809 * 180.02562 * 15 14 12 17 17 O 1.21276 * 120.00556 * 359.97438 * 16 15 14 18 18 C 1.50709 * 119.99963 * 179.97438 * 16 15 14 19 19 H 1.09002 * 110.66369 * 55.69453 * 18 16 15 20 20 C 1.54706 * 110.74732 * 292.48425 * 18 16 15 21 21 C 1.51945 * 101.79747 * 216.50499 * 20 18 16 22 22 C 1.37751 * 132.07161 * 195.83939 * 21 20 18 23 23 C 1.38527 * 119.95887 * 178.84576 * 22 21 20 24 24 F 1.35098 * 120.14892 * 180.02562 * 23 22 21 25 25 C 1.38479 * 119.71181 * 359.97438 * 23 22 21 26 26 C 1.37929 * 120.32588 * 0.19012 * 25 23 22 27 27 C 1.38864 * 107.10815 * 15.14010 * 21 20 18 28 28 O 1.36182 * 111.22760 * 1.24731 * 27 21 20 29 29 C 1.47418 * 125.64567 * 171.29217 * 9 7 2 30 30 H 0.97003 * 119.99843 * 175.28683 * 1 2 3 31 31 H 1.08998 * 109.88434 * 298.39653 * 10 9 7 32 32 H 1.09007 * 109.88372 * 59.55561 * 10 9 7 33 33 H 1.08995 * 110.85407 * 219.67605 * 11 10 9 34 34 H 1.08996 * 110.51071 * 96.44896 * 11 10 9 35 35 H 1.09003 * 109.47467 * 301.35166 * 14 12 11 36 36 H 1.09004 * 109.47115 * 61.34853 * 14 12 11 37 37 H 0.97002 * 120.00085 * 359.97438 * 15 14 12 38 38 H 1.09002 * 110.93460 * 334.54459 * 20 18 16 39 39 H 1.09004 * 110.93813 * 98.22323 * 20 18 16 40 40 H 1.08000 * 120.02105 * 358.86652 * 22 21 20 41 41 H 1.08003 * 119.83553 * 180.17250 * 25 23 22 42 42 H 1.07999 * 119.86726 * 180.02562 * 26 25 23 43 43 H 1.09005 * 110.37189 * 322.93455 * 29 9 7 44 44 H 1.08998 * 110.36896 * 85.14882 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 0.1344 5 1 3.2020 1.6398 1.1397 6 1 3.0003 1.7562 -1.2741 7 6 2.0103 -1.2022 0.0059 8 1 1.4994 -2.1194 0.2589 9 7 3.3427 -1.2250 -0.3092 10 6 4.1150 -0.0966 -0.8492 11 6 5.5716 -0.5777 -1.0189 12 6 5.6585 -1.7802 -0.0421 13 1 5.8498 -1.4435 0.9768 14 6 6.7246 -2.7792 -0.4959 15 7 6.7560 -3.9141 0.4301 16 6 7.6247 -4.9246 0.2283 17 8 8.3801 -4.8947 -0.7200 18 6 7.6574 -6.0918 1.1812 19 1 6.6712 -6.5486 1.2638 20 6 8.1752 -5.6506 2.5706 21 6 8.9841 -6.8630 3.0001 22 6 9.4751 -7.2583 4.2249 23 6 10.1757 -8.4480 4.3381 24 9 10.6585 -8.8396 5.5375 25 6 10.3781 -9.2347 3.2166 26 6 9.8893 -8.8371 1.9896 27 6 9.1883 -7.6399 1.8674 28 8 8.6347 -7.0610 0.7660 29 6 4.2388 -2.3871 -0.1690 30 1 -0.4850 -0.8372 -0.0690 31 1 3.7069 0.2039 -1.8142 32 1 4.0822 0.7419 -0.1533 33 1 6.2744 0.2042 -0.7315 34 1 5.7501 -0.9004 -2.0446 35 1 6.4863 -3.1348 -1.4984 36 1 7.6992 -2.2912 -0.5056 37 1 6.1521 -3.9379 1.1888 38 1 8.8105 -4.7688 2.4875 39 1 7.3467 -5.4688 3.2553 40 1 9.3136 -6.6413 5.0965 41 1 10.9216 -10.1639 3.3031 42 1 10.0511 -9.4566 1.1198 43 1 3.9874 -2.9543 0.7272 44 1 4.1744 -3.0244 -1.0509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028841913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:11 Heat of formation + Delta-G solvation = -47.763698 kcal Electronic energy + Delta-G solvation = -27661.537008 eV Core-core repulsion = 23494.977691 eV Total energy + Delta-G solvation = -4166.559318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.24645 -41.83466 -39.70244 -38.17216 -37.47109 -35.01058 -33.43799 -32.67915 -30.88064 -30.16814 -29.85630 -28.74562 -26.17336 -24.74464 -23.19559 -22.80549 -22.35831 -21.23048 -20.53871 -20.00688 -18.20049 -18.02596 -17.60717 -17.58032 -17.34690 -16.22762 -16.02135 -15.87241 -15.58862 -15.05177 -14.93207 -14.69665 -14.29051 -13.92221 -13.89678 -13.53744 -13.46025 -13.42260 -13.31103 -13.07255 -12.82853 -12.63808 -12.39716 -11.91589 -11.72061 -11.53700 -11.31290 -11.25057 -11.05686 -10.72447 -10.57860 -10.10585 -9.96540 -9.57501 -9.41435 -9.27178 -9.02674 -8.73194 -8.52778 -7.10099 -6.36292 -3.27146 0.59423 0.68336 2.15657 2.33637 2.93908 3.19596 3.38293 3.44579 3.63378 3.67730 3.83278 4.05492 4.26365 4.35188 4.49994 4.56318 4.57837 4.68173 4.73095 4.90782 4.94554 5.06798 5.11293 5.16268 5.17430 5.33227 5.42997 5.51168 5.56440 5.62098 5.63775 5.69413 5.76884 5.92087 6.01337 6.04519 6.13013 6.17655 6.33666 6.44580 6.59321 6.61303 6.71245 7.20531 7.59932 7.89867 8.27949 8.98682 9.50874 10.16875 11.14363 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.002048 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.728977 B =13666.641487 C =14159.841503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.022 4.022 3 Si 1.073 2.927 4 H -0.302 1.302 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.324 4.324 8 H 0.078 0.922 9 N -0.613 5.613 10 C 0.110 3.890 11 C -0.119 4.119 12 C -0.122 4.122 13 H 0.085 0.915 14 C 0.134 3.866 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.518 6.518 18 C 0.063 3.937 19 H 0.118 0.882 20 C -0.099 4.099 21 C -0.146 4.146 22 C -0.100 4.100 23 C 0.068 3.932 24 F -0.137 7.137 25 C -0.115 4.115 26 C -0.107 4.107 27 C 0.101 3.899 28 O -0.269 6.269 29 C 0.142 3.858 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.042 0.958 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.281 -15.383 7.291 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.230 1.230 5 H -0.228 1.228 6 H -0.214 1.214 7 C -0.451 4.451 8 H 0.096 0.904 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.141 4.141 13 H 0.103 0.897 14 C 0.011 3.989 15 N -0.371 5.371 16 C 0.301 3.699 17 O -0.392 6.392 18 C 0.003 3.997 19 H 0.136 0.864 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.119 4.119 23 C 0.049 3.951 24 F -0.116 7.116 25 C -0.134 4.134 26 C -0.126 4.126 27 C 0.055 3.945 28 O -0.182 6.182 29 C 0.016 3.984 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.060 0.940 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.571 -13.767 6.462 26.393 hybrid contribution -0.109 -1.704 0.700 1.845 sum 21.462 -15.470 7.162 27.409 Atomic orbital electron populations 1.70899 1.05745 1.29233 1.50924 1.25850 0.96468 1.00985 0.98881 0.83794 0.73091 0.76185 0.76241 1.23037 1.22773 1.21385 1.20149 0.82178 0.96277 1.46543 0.90438 1.44799 1.06641 1.07225 1.75437 1.21994 0.90261 0.91863 0.97392 1.22546 0.97424 0.96733 0.99017 1.22693 0.95445 0.95681 1.00322 0.89683 1.21423 0.99210 0.85316 0.92973 1.45898 1.38933 1.21211 1.31029 1.19892 0.81098 0.83067 0.85865 1.90765 1.40051 1.78227 1.30180 1.23247 0.94213 0.89141 0.93069 0.86413 1.21841 1.00349 0.96913 0.94484 1.20532 1.03618 0.96928 0.93628 1.20206 0.98353 0.95774 0.97533 1.17370 1.00826 0.95649 0.81272 1.91510 1.86222 1.90787 1.43091 1.20873 1.01141 1.00666 0.90707 1.20089 1.00484 0.93830 0.98178 1.19624 0.95815 0.93214 0.85840 1.86989 1.52232 1.51514 1.27436 1.21626 0.87390 0.90965 0.98406 0.92847 0.93574 0.95303 0.91061 0.91002 0.90879 0.91185 0.76063 0.88019 0.87291 0.84168 0.83671 0.84033 0.93968 0.95579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.70 55.49 0.76 -28.05 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.07 26.34 24.54 -169.99 -4.17 22.17 16 4 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 5 H -0.30 -7.02 6.83 56.52 0.39 -6.63 16 6 H -0.29 -6.43 5.44 56.52 0.31 -6.12 16 7 C -0.32 -9.06 10.56 -15.06 -0.16 -9.22 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 9 N -0.61 -14.35 3.33 -170.07 -0.57 -14.92 16 10 C 0.11 2.27 4.63 -3.06 -0.01 2.26 16 11 C -0.12 -1.79 6.42 -24.89 -0.16 -1.95 16 12 C -0.12 -1.68 3.11 -88.47 -0.27 -1.96 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 1.59 5.12 -4.04 -0.02 1.57 16 15 N -0.72 -7.32 5.41 -60.29 -0.33 -7.65 16 16 C 0.52 6.07 7.13 -10.98 -0.08 5.99 16 17 O -0.52 -8.37 16.57 -13.50 -0.22 -8.60 16 18 C 0.06 0.58 4.04 -26.98 -0.11 0.47 16 19 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.10 -0.69 6.66 -26.37 -0.18 -0.87 16 21 C -0.15 -1.23 6.28 -103.95 -0.65 -1.88 16 22 C -0.10 -0.77 10.01 -39.65 -0.40 -1.17 16 23 C 0.07 0.56 7.31 -39.39 -0.29 0.27 16 24 F -0.14 -1.22 17.27 2.25 0.04 -1.18 16 25 C -0.12 -0.82 10.00 -39.61 -0.40 -1.21 16 26 C -0.11 -0.85 10.06 -39.31 -0.40 -1.25 16 27 C 0.10 0.99 7.04 -38.96 -0.27 0.71 16 28 O -0.27 -3.15 10.39 -39.38 -0.41 -3.56 16 29 C 0.14 2.55 6.40 -2.53 -0.02 2.53 16 30 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 31 H 0.05 1.02 6.82 -51.93 -0.35 0.66 16 32 H 0.03 0.64 3.73 -51.93 -0.19 0.45 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.24 8.34 -40.82 -0.34 2.90 16 38 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.48 8.01 -51.93 -0.42 0.06 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -35.29 361.63 -9.00 -44.29 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.04 Total: -1.49 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.51 Total: -6.46 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.13 Total: -50.62 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.63 Total: -12.16 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.17 Total: 22.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.29 -9.00 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028841913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.476 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds