Wall clock time and date at job start Tue Mar 31 2020 18:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46846 * 5.50965 * 3 2 1 5 5 H 1.48497 * 109.47044 * 125.50928 * 3 2 1 6 6 H 1.48497 * 109.46952 * 245.51044 * 3 2 1 7 7 C 1.38817 * 120.00015 * 179.71797 * 2 1 3 8 8 H 1.07997 * 119.99939 * 344.59549 * 7 2 1 9 9 N 1.36934 * 119.99822 * 164.58539 * 7 2 1 10 10 C 1.47018 * 125.65081 * 350.98852 * 9 7 2 11 11 C 1.54336 * 107.26918 * 178.84311 * 10 9 7 12 12 C 1.55161 * 103.01729 * 338.14413 * 11 10 9 13 13 H 1.09001 * 111.03577 * 277.21523 * 12 11 10 14 14 C 1.52994 * 111.00369 * 153.37760 * 12 11 10 15 15 N 1.46501 * 109.47209 * 181.34919 * 14 12 11 16 16 C 1.34773 * 119.99809 * 180.02562 * 15 14 12 17 17 O 1.21276 * 120.00556 * 359.97438 * 16 15 14 18 18 C 1.50709 * 119.99963 * 179.97438 * 16 15 14 19 19 H 1.09002 * 110.66369 * 55.69453 * 18 16 15 20 20 C 1.54706 * 110.74732 * 292.48425 * 18 16 15 21 21 C 1.51945 * 101.79747 * 216.50499 * 20 18 16 22 22 C 1.37751 * 132.07161 * 195.83939 * 21 20 18 23 23 C 1.38527 * 119.95887 * 178.84576 * 22 21 20 24 24 F 1.35098 * 120.14892 * 180.02562 * 23 22 21 25 25 C 1.38479 * 119.71181 * 359.97438 * 23 22 21 26 26 C 1.37929 * 120.32588 * 0.19012 * 25 23 22 27 27 C 1.38864 * 107.10815 * 15.14010 * 21 20 18 28 28 O 1.36182 * 111.22760 * 1.24731 * 27 21 20 29 29 C 1.47418 * 125.64567 * 171.29217 * 9 7 2 30 30 H 0.97003 * 119.99843 * 175.28683 * 1 2 3 31 31 H 1.08998 * 109.88434 * 298.39653 * 10 9 7 32 32 H 1.09007 * 109.88372 * 59.55561 * 10 9 7 33 33 H 1.08995 * 110.85407 * 219.67605 * 11 10 9 34 34 H 1.08996 * 110.51071 * 96.44896 * 11 10 9 35 35 H 1.09003 * 109.47467 * 301.35166 * 14 12 11 36 36 H 1.09004 * 109.47115 * 61.34853 * 14 12 11 37 37 H 0.97002 * 120.00085 * 359.97438 * 15 14 12 38 38 H 1.09002 * 110.93460 * 334.54459 * 20 18 16 39 39 H 1.09004 * 110.93813 * 98.22323 * 20 18 16 40 40 H 1.08000 * 120.02105 * 358.86652 * 22 21 20 41 41 H 1.08003 * 119.83553 * 180.17250 * 25 23 22 42 42 H 1.07999 * 119.86726 * 180.02562 * 26 25 23 43 43 H 1.09005 * 110.37189 * 322.93455 * 29 9 7 44 44 H 1.08998 * 110.36896 * 85.14882 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 0.1344 5 1 3.2020 1.6398 1.1397 6 1 3.0003 1.7562 -1.2741 7 6 2.0103 -1.2022 0.0059 8 1 1.4994 -2.1194 0.2589 9 7 3.3427 -1.2250 -0.3092 10 6 4.1150 -0.0966 -0.8492 11 6 5.5716 -0.5777 -1.0189 12 6 5.6585 -1.7802 -0.0421 13 1 5.8498 -1.4435 0.9768 14 6 6.7246 -2.7792 -0.4959 15 7 6.7560 -3.9141 0.4301 16 6 7.6247 -4.9246 0.2283 17 8 8.3801 -4.8947 -0.7200 18 6 7.6574 -6.0918 1.1812 19 1 6.6712 -6.5486 1.2638 20 6 8.1752 -5.6506 2.5706 21 6 8.9841 -6.8630 3.0001 22 6 9.4751 -7.2583 4.2249 23 6 10.1757 -8.4480 4.3381 24 9 10.6585 -8.8396 5.5375 25 6 10.3781 -9.2347 3.2166 26 6 9.8893 -8.8371 1.9896 27 6 9.1883 -7.6399 1.8674 28 8 8.6347 -7.0610 0.7660 29 6 4.2388 -2.3871 -0.1690 30 1 -0.4850 -0.8372 -0.0690 31 1 3.7069 0.2039 -1.8142 32 1 4.0822 0.7419 -0.1533 33 1 6.2744 0.2042 -0.7315 34 1 5.7501 -0.9004 -2.0446 35 1 6.4863 -3.1348 -1.4984 36 1 7.6992 -2.2912 -0.5056 37 1 6.1521 -3.9379 1.1888 38 1 8.8105 -4.7688 2.4875 39 1 7.3467 -5.4688 3.2553 40 1 9.3136 -6.6413 5.0965 41 1 10.9216 -10.1639 3.3031 42 1 10.0511 -9.4566 1.1198 43 1 3.9874 -2.9543 0.7272 44 1 4.1744 -3.0244 -1.0509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028841913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:10 Heat of formation + Delta-G solvation = -71.659470 kcal Electronic energy + Delta-G solvation = -27662.573207 eV Core-core repulsion = 23494.977691 eV Total energy + Delta-G solvation = -4167.595516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.88236 -42.51696 -40.64904 -39.51256 -38.17859 -36.20939 -34.66775 -33.92783 -32.25326 -30.97560 -30.72426 -30.04226 -27.46006 -25.78980 -24.50780 -23.48388 -22.95148 -22.72317 -21.62934 -21.28648 -19.56310 -18.86223 -18.73210 -18.22603 -18.17658 -17.39309 -17.05546 -16.78772 -16.57845 -16.17073 -15.91230 -15.47279 -15.39060 -15.25839 -15.13013 -14.53598 -14.50661 -14.20953 -14.08290 -14.03605 -13.94469 -13.57948 -13.27869 -13.23390 -13.05394 -12.95806 -12.68793 -12.20843 -12.13404 -11.85736 -11.84506 -11.59139 -11.37108 -11.08347 -10.95757 -10.63719 -10.20478 -10.12915 -9.16960 -9.08554 -8.64404 -5.45632 0.00480 0.09136 1.33103 1.42404 1.51394 1.54307 1.73981 2.29548 2.51894 2.57133 3.01464 3.11541 3.22710 3.29558 3.42100 3.60506 3.73959 3.77825 3.80919 3.91818 3.93142 4.04226 4.17714 4.27552 4.36434 4.38490 4.56380 4.61230 4.64999 4.72570 4.79028 4.79824 4.83009 4.98116 5.01283 5.02972 5.06551 5.18282 5.18839 5.28457 5.40174 5.46601 5.55748 5.96996 6.10979 6.38837 6.83190 7.04913 7.47199 8.10388 8.88570 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.002048 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.728977 B =13666.641487 C =14159.841503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.085 4.085 3 Si 1.112 2.888 4 H -0.317 1.317 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.310 4.310 8 H 0.047 0.953 9 N -0.636 5.636 10 C 0.096 3.904 11 C -0.110 4.110 12 C -0.099 4.099 13 H 0.101 0.899 14 C 0.143 3.857 15 N -0.706 5.706 16 C 0.520 3.480 17 O -0.567 6.567 18 C 0.062 3.938 19 H 0.142 0.858 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.101 4.101 23 C 0.056 3.944 24 F -0.143 7.143 25 C -0.111 4.111 26 C -0.112 4.112 27 C 0.075 3.925 28 O -0.299 6.299 29 C 0.135 3.865 30 H 0.247 0.753 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.418 0.582 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.048 0.952 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.979 -15.231 8.325 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.277 4.277 3 Si 0.940 3.060 4 H -0.247 1.247 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.438 4.438 8 H 0.065 0.935 9 N -0.364 5.364 10 C -0.028 4.028 11 C -0.149 4.149 12 C -0.118 4.118 13 H 0.119 0.881 14 C 0.019 3.981 15 N -0.359 5.359 16 C 0.305 3.695 17 O -0.446 6.446 18 C 0.003 3.997 19 H 0.159 0.841 20 C -0.128 4.128 21 C -0.150 4.150 22 C -0.120 4.120 23 C 0.037 3.963 24 F -0.122 7.122 25 C -0.130 4.130 26 C -0.131 4.131 27 C 0.029 3.971 28 O -0.213 6.213 29 C 0.010 3.990 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.255 0.745 38 H 0.120 0.880 39 H 0.159 0.841 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.171 0.829 43 H 0.067 0.933 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 24.306 -13.653 7.517 28.874 hybrid contribution -0.952 -1.915 0.371 2.171 sum 23.354 -15.568 7.889 29.154 Atomic orbital electron populations 1.71007 1.07135 1.28378 1.54568 1.27154 0.96496 1.04703 0.99369 0.83347 0.72409 0.71801 0.78416 1.24682 1.20566 1.17963 1.20061 0.84650 0.94907 1.44203 0.93514 1.44919 1.05909 1.09925 1.75637 1.22162 0.93329 0.91245 0.96077 1.22565 0.94053 0.97950 1.00285 1.22507 0.92936 0.95250 1.01127 0.88062 1.21248 0.98949 0.85288 0.92621 1.45775 1.38674 1.20481 1.30994 1.20324 0.80184 0.83548 0.85456 1.90743 1.42118 1.79320 1.32382 1.23389 0.95057 0.88053 0.93241 0.84107 1.21893 1.01167 0.96151 0.93559 1.20680 1.03737 0.97242 0.93372 1.20398 0.97833 0.95805 0.97937 1.17596 1.01179 0.96187 0.81330 1.91497 1.86352 1.90881 1.43443 1.21112 1.00600 1.01268 0.89997 1.20332 1.00094 0.93662 0.98987 1.19940 0.96923 0.94278 0.85912 1.86940 1.53142 1.52303 1.28897 1.21826 0.89099 0.89625 0.98441 0.94458 0.95266 0.95532 0.87671 0.89730 0.91997 0.89843 0.74514 0.88018 0.84142 0.82369 0.81463 0.82880 0.93341 0.95941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.12 13.70 21.65 0.30 -61.82 16 2 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 3 Si 1.11 52.74 24.54 68.60 1.68 54.42 16 4 H -0.32 -15.71 7.11 99.48 0.71 -15.01 16 5 H -0.28 -12.12 6.83 99.48 0.68 -11.44 16 6 H -0.25 -10.65 5.44 99.48 0.54 -10.11 16 7 C -0.31 -17.53 10.56 84.04 0.89 -16.65 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 9 N -0.64 -29.02 3.33 -691.97 -2.31 -31.33 16 10 C 0.10 3.73 4.63 86.73 0.40 4.13 16 11 C -0.11 -2.87 6.42 31.79 0.20 -2.67 16 12 C -0.10 -2.35 3.11 -9.40 -0.03 -2.38 16 13 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.14 2.91 5.12 86.38 0.44 3.35 16 15 N -0.71 -12.38 5.41 -463.06 -2.50 -14.89 16 16 C 0.52 11.27 7.13 87.66 0.62 11.89 16 17 O -0.57 -17.91 16.57 15.21 0.25 -17.66 16 18 C 0.06 1.02 4.04 30.43 0.12 1.14 16 19 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 20 C -0.09 -1.03 6.66 30.83 0.21 -0.83 16 21 C -0.15 -2.23 6.28 -19.43 -0.12 -2.35 16 22 C -0.10 -1.36 10.01 22.22 0.22 -1.13 16 23 C 0.06 0.83 7.31 22.40 0.16 0.99 16 24 F -0.14 -2.32 17.27 44.97 0.78 -1.54 16 25 C -0.11 -1.40 10.00 22.25 0.22 -1.18 16 26 C -0.11 -1.66 10.06 22.45 0.23 -1.44 16 27 C 0.07 1.38 7.04 22.67 0.16 1.54 16 28 O -0.30 -6.80 10.39 -77.40 -0.80 -7.61 16 29 C 0.13 4.56 6.40 86.86 0.56 5.12 16 30 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 31 H 0.03 1.23 6.82 -2.39 -0.02 1.21 16 32 H 0.03 1.08 3.73 -2.38 -0.01 1.07 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 35 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.42 5.23 8.34 -92.71 -0.77 4.46 16 38 H 0.10 1.18 7.92 -2.39 -0.02 1.16 16 39 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.02 0.79 8.01 -2.39 -0.02 0.77 16 Total: -1.00 -80.13 361.63 2.18 -77.95 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.03 Total: 7.48 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.75 Total: -5.01 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -4.51 Total: -108.03 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.55 Total: -25.26 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.68 Total: 54.42 kcal Total: -80.13 2.18 -77.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028841913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.293 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds