Wall clock time and date at job start Tue Mar 31 2020 18:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64709 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.83070 * 204.09032 * 10 9 7 12 12 C 1.55151 * 101.58341 * 322.99186 * 11 10 9 13 13 H 1.08999 * 110.71802 * 277.13604 * 12 11 10 14 14 C 1.52998 * 110.72221 * 154.04523 * 12 11 10 15 15 N 1.46498 * 109.47438 * 174.99939 * 14 12 11 16 16 C 1.34772 * 120.00237 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99926 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.66567 * 306.75669 * 18 16 15 20 20 C 1.54694 * 110.75151 * 70.17777 * 18 16 15 21 21 C 1.51657 * 101.93355 * 93.03366 * 20 18 16 22 22 C 1.37752 * 132.13276 * 195.89255 * 21 20 18 23 23 C 1.38540 * 119.95052 * 179.04220 * 22 21 20 24 24 F 1.35111 * 120.13857 * 180.02562 * 23 22 21 25 25 C 1.38470 * 119.71938 * 359.97438 * 23 22 21 26 26 C 1.37939 * 120.32109 * 0.19315 * 25 23 22 27 27 C 1.38861 * 107.04750 * 15.37714 * 21 20 18 28 28 O 1.36191 * 111.22546 * 1.08455 * 27 21 20 29 29 C 1.47023 * 125.65252 * 179.71302 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36756 * 322.92683 * 10 9 7 32 32 H 1.08993 * 110.36856 * 85.25403 * 10 9 7 33 33 H 1.09000 * 111.00222 * 81.06850 * 11 10 9 34 34 H 1.09001 * 111.00498 * 204.91470 * 11 10 9 35 35 H 1.09006 * 109.47185 * 294.99842 * 14 12 11 36 36 H 1.08999 * 109.47163 * 54.99572 * 14 12 11 37 37 H 0.96997 * 119.99546 * 359.97438 * 15 14 12 38 38 H 1.09001 * 110.93890 * 211.19479 * 20 18 16 39 39 H 1.09002 * 110.93834 * 334.87753 * 20 18 16 40 40 H 1.07996 * 120.02438 * 359.06358 * 22 21 20 41 41 H 1.07990 * 119.83973 * 180.16936 * 25 23 22 42 42 H 1.08001 * 119.86016 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.88037 * 298.40056 * 29 9 7 44 44 H 1.08998 * 109.87956 * 59.56130 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4021 -3.9323 0.6111 12 6 0.7783 -4.7524 0.0269 13 1 0.5464 -5.0980 -0.9805 14 6 1.1194 -5.9339 0.9372 15 7 2.1536 -6.7557 0.3037 16 6 2.6136 -7.8585 0.9270 17 8 2.1718 -8.1704 2.0127 18 6 3.6779 -8.7036 0.2756 19 1 3.3794 -8.9876 -0.7335 20 6 5.0349 -7.9612 0.2615 21 6 5.6801 -8.4627 1.5391 22 6 6.7510 -8.0053 2.2748 23 6 7.1208 -8.6598 3.4385 24 9 8.1703 -8.2141 4.1634 25 6 6.4095 -9.7720 3.8562 26 6 5.3392 -10.2320 3.1175 27 6 4.9649 -9.5820 1.9440 28 8 3.9605 -9.8682 1.0700 29 6 1.9317 -3.7275 -0.0049 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5998 -1.7588 0.6148 32 1 -0.5266 -2.4868 -1.0191 33 1 -0.3533 -3.8981 1.6995 34 1 -1.3593 -4.3327 0.2770 35 1 1.4865 -5.5615 1.8936 36 1 0.2260 -6.5364 1.1007 37 1 2.5066 -6.5066 -0.5647 38 1 5.6250 -8.2446 -0.6101 39 1 4.8887 -6.8816 0.2968 40 1 7.3018 -7.1369 1.9449 41 1 6.6943 -10.2821 4.7645 42 1 4.7894 -11.0999 3.4504 43 1 2.5251 -3.8622 -0.9092 44 1 2.5611 -3.8531 0.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028841914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:14 Heat of formation + Delta-G solvation = -56.716476 kcal Electronic energy + Delta-G solvation = -28126.241684 eV Core-core repulsion = 23959.294145 eV Total energy + Delta-G solvation = -4166.947539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.07934 -41.83168 -39.42385 -37.80259 -37.25942 -34.81151 -33.31593 -32.50817 -30.48058 -29.98701 -29.53948 -28.21319 -25.85149 -24.79497 -23.40270 -22.77152 -22.21324 -20.94519 -20.09136 -19.77443 -18.19513 -17.76813 -17.56583 -17.06799 -16.85500 -16.04782 -15.88251 -15.58373 -15.34928 -14.76359 -14.62664 -14.57237 -14.33277 -13.73870 -13.69474 -13.51238 -13.33540 -13.09015 -12.95523 -12.69218 -12.56927 -12.12129 -11.83591 -11.76735 -11.67872 -11.54985 -11.17425 -11.00398 -10.82327 -10.49448 -10.20571 -10.09561 -9.98532 -9.80278 -9.56111 -9.39408 -9.11917 -8.69006 -8.35585 -6.88442 -5.69628 -3.11687 0.76040 0.85350 2.30975 2.61639 3.10141 3.23577 3.37568 3.41940 3.43253 3.73290 3.98536 4.19097 4.38901 4.43562 4.45781 4.68473 4.74082 4.84424 5.01348 5.12604 5.16370 5.18376 5.28914 5.33555 5.47680 5.48625 5.63740 5.72944 5.80212 5.81109 5.92809 5.98764 6.03036 6.18239 6.27946 6.30132 6.48066 6.52949 6.64402 6.72565 6.83581 7.33642 7.46277 7.57568 7.81224 8.02525 8.32164 9.17637 9.78661 10.43067 11.34261 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002570 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.452202 B =10893.887055 C =12319.882742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.718 5.718 16 C 0.493 3.507 17 O -0.522 6.522 18 C 0.064 3.936 19 H 0.145 0.855 20 C -0.100 4.100 21 C -0.147 4.147 22 C -0.100 4.100 23 C 0.069 3.931 24 F -0.138 7.138 25 C -0.117 4.117 26 C -0.104 4.104 27 C 0.105 3.895 28 O -0.271 6.271 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.402 0.598 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.018 0.982 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 -20.834 0.404 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.277 3.723 17 O -0.397 6.397 18 C 0.004 3.996 19 H 0.162 0.838 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.119 4.119 23 C 0.050 3.950 24 F -0.116 7.116 25 C -0.136 4.136 26 C -0.123 4.123 27 C 0.060 3.940 28 O -0.183 6.183 29 C 0.016 3.984 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.036 0.964 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.349 -21.010 1.202 23.027 hybrid contribution 0.820 1.218 -0.468 1.541 sum 10.168 -19.792 0.733 22.263 Atomic orbital electron populations 1.69785 1.04908 1.24960 1.57415 1.24793 0.95737 0.97760 1.02310 0.86147 0.78421 0.82991 0.77908 1.21525 1.21114 1.21208 1.19019 0.90452 0.82494 1.43390 0.90595 1.44493 1.01980 0.99694 1.86862 1.21938 0.84666 0.92504 0.98199 1.23010 0.95489 0.98602 1.00368 1.22448 0.98424 0.93918 0.98593 0.90521 1.21511 0.89951 0.90979 0.96602 1.46020 1.41768 1.25989 1.23351 1.20769 0.83495 0.81713 0.86302 1.90754 1.58351 1.70318 1.20281 1.23377 0.94693 0.85577 0.95992 0.83754 1.21815 0.93171 1.02412 0.96287 1.20475 0.97896 0.98581 0.97803 1.20203 0.97230 1.00755 0.93714 1.17370 0.88601 0.96480 0.92578 1.91509 1.54616 1.88885 1.76630 1.20853 0.95573 0.96110 1.01014 1.20076 0.98378 1.02317 0.91488 1.19537 0.88609 0.94836 0.91016 1.86951 1.51606 1.32574 1.47164 1.21327 0.93426 0.86051 0.97639 0.93624 0.87498 0.96987 0.91815 0.92062 0.91093 0.91407 0.76327 0.87235 0.87738 0.84200 0.83768 0.84201 0.96417 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -15.02 3.39 -170.07 -0.58 -15.59 16 10 C 0.15 3.56 5.89 -2.53 -0.01 3.55 16 11 C -0.14 -2.42 6.53 -24.59 -0.16 -2.58 16 12 C -0.11 -1.78 2.94 -88.79 -0.26 -2.04 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.13 1.83 5.03 -4.04 -0.02 1.81 16 15 N -0.72 -8.10 5.47 -60.29 -0.33 -8.43 16 16 C 0.49 6.21 7.03 -10.99 -0.08 6.13 16 17 O -0.52 -8.96 16.46 -13.49 -0.22 -9.18 16 18 C 0.06 0.59 4.11 -26.99 -0.11 0.47 16 19 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.10 -0.78 6.64 -26.52 -0.18 -0.95 16 21 C -0.15 -1.52 6.26 -104.10 -0.65 -2.17 16 22 C -0.10 -1.02 10.02 -39.65 -0.40 -1.41 16 23 C 0.07 0.73 7.31 -39.38 -0.29 0.44 16 24 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 25 C -0.12 -1.09 10.00 -39.61 -0.40 -1.49 16 26 C -0.10 -1.05 10.06 -39.31 -0.40 -1.45 16 27 C 0.11 1.21 6.83 -38.97 -0.27 0.95 16 28 O -0.27 -3.19 10.43 -39.39 -0.41 -3.61 16 29 C 0.14 2.73 6.77 -3.06 -0.02 2.71 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 3.44 8.47 -40.82 -0.35 3.10 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.79 7.91 -51.93 -0.41 0.38 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.46 7.70 -51.93 -0.40 0.06 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.94 368.43 -9.97 -43.90 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.07 Total: 0.79 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.49 Total: -2.74 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.35 Total: -49.98 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.63 Total: -12.79 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.94 -9.97 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028841914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.813 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds