Wall clock time and date at job start Tue Mar 31 2020 18:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64709 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.83070 * 204.09032 * 10 9 7 12 12 C 1.55151 * 101.58341 * 322.99186 * 11 10 9 13 13 H 1.08999 * 110.71802 * 277.13604 * 12 11 10 14 14 C 1.52998 * 110.72221 * 154.04523 * 12 11 10 15 15 N 1.46498 * 109.47438 * 174.99939 * 14 12 11 16 16 C 1.34772 * 120.00237 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99926 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.66567 * 306.75669 * 18 16 15 20 20 C 1.54694 * 110.75151 * 70.17777 * 18 16 15 21 21 C 1.51657 * 101.93355 * 93.03366 * 20 18 16 22 22 C 1.37752 * 132.13276 * 195.89255 * 21 20 18 23 23 C 1.38540 * 119.95052 * 179.04220 * 22 21 20 24 24 F 1.35111 * 120.13857 * 180.02562 * 23 22 21 25 25 C 1.38470 * 119.71938 * 359.97438 * 23 22 21 26 26 C 1.37939 * 120.32109 * 0.19315 * 25 23 22 27 27 C 1.38861 * 107.04750 * 15.37714 * 21 20 18 28 28 O 1.36191 * 111.22546 * 1.08455 * 27 21 20 29 29 C 1.47023 * 125.65252 * 179.71302 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36756 * 322.92683 * 10 9 7 32 32 H 1.08993 * 110.36856 * 85.25403 * 10 9 7 33 33 H 1.09000 * 111.00222 * 81.06850 * 11 10 9 34 34 H 1.09001 * 111.00498 * 204.91470 * 11 10 9 35 35 H 1.09006 * 109.47185 * 294.99842 * 14 12 11 36 36 H 1.08999 * 109.47163 * 54.99572 * 14 12 11 37 37 H 0.96997 * 119.99546 * 359.97438 * 15 14 12 38 38 H 1.09001 * 110.93890 * 211.19479 * 20 18 16 39 39 H 1.09002 * 110.93834 * 334.87753 * 20 18 16 40 40 H 1.07996 * 120.02438 * 359.06358 * 22 21 20 41 41 H 1.07990 * 119.83973 * 180.16936 * 25 23 22 42 42 H 1.08001 * 119.86016 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.88037 * 298.40056 * 29 9 7 44 44 H 1.08998 * 109.87956 * 59.56130 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4021 -3.9323 0.6111 12 6 0.7783 -4.7524 0.0269 13 1 0.5464 -5.0980 -0.9805 14 6 1.1194 -5.9339 0.9372 15 7 2.1536 -6.7557 0.3037 16 6 2.6136 -7.8585 0.9270 17 8 2.1718 -8.1704 2.0127 18 6 3.6779 -8.7036 0.2756 19 1 3.3794 -8.9876 -0.7335 20 6 5.0349 -7.9612 0.2615 21 6 5.6801 -8.4627 1.5391 22 6 6.7510 -8.0053 2.2748 23 6 7.1208 -8.6598 3.4385 24 9 8.1703 -8.2141 4.1634 25 6 6.4095 -9.7720 3.8562 26 6 5.3392 -10.2320 3.1175 27 6 4.9649 -9.5820 1.9440 28 8 3.9605 -9.8682 1.0700 29 6 1.9317 -3.7275 -0.0049 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5998 -1.7588 0.6148 32 1 -0.5266 -2.4868 -1.0191 33 1 -0.3533 -3.8981 1.6995 34 1 -1.3593 -4.3327 0.2770 35 1 1.4865 -5.5615 1.8936 36 1 0.2260 -6.5364 1.1007 37 1 2.5066 -6.5066 -0.5647 38 1 5.6250 -8.2446 -0.6101 39 1 4.8887 -6.8816 0.2968 40 1 7.3018 -7.1369 1.9449 41 1 6.6943 -10.2821 4.7645 42 1 4.7894 -11.0999 3.4504 43 1 2.5251 -3.8622 -0.9092 44 1 2.5611 -3.8531 0.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028841914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:13 Heat of formation + Delta-G solvation = -77.703697 kcal Electronic energy + Delta-G solvation = -28127.151758 eV Core-core repulsion = 23959.294145 eV Total energy + Delta-G solvation = -4167.857613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89773 -42.60327 -40.45456 -39.22141 -38.13033 -36.10912 -34.48928 -33.81228 -31.82065 -30.89051 -30.67634 -29.63957 -27.37569 -26.00631 -24.67772 -23.58587 -22.93931 -22.24066 -21.55787 -21.10717 -19.20162 -18.75527 -18.53576 -18.32612 -17.82123 -17.25590 -16.79454 -16.65813 -16.53232 -16.31717 -15.74370 -15.56900 -15.34869 -15.20478 -14.52954 -14.42140 -14.26334 -14.15369 -13.99184 -13.81970 -13.53290 -13.51954 -13.36544 -13.16668 -12.85229 -12.75703 -12.64498 -12.48981 -12.05656 -11.91258 -11.85491 -11.81645 -11.59123 -11.36506 -10.88447 -10.72441 -10.18350 -10.10085 -9.14334 -8.86882 -7.76963 -5.20833 0.01109 0.09350 1.40497 1.46908 1.49606 1.55962 1.79022 2.26089 2.48937 2.50124 3.03227 3.30484 3.32791 3.48075 3.55677 3.66535 3.76418 3.81143 3.99260 4.03261 4.07451 4.10025 4.18989 4.44393 4.45870 4.61625 4.64887 4.66017 4.71086 4.81158 4.83440 4.92358 5.00943 5.05722 5.06233 5.13610 5.17938 5.30688 5.41629 5.44942 5.48934 5.66993 5.83904 5.97278 6.32901 6.45441 7.11805 7.12167 7.80498 8.43470 9.24742 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002570 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.452202 B =10893.887055 C =12319.882742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.295 1.295 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.124 4.124 12 C -0.092 4.092 13 H 0.102 0.898 14 C 0.144 3.856 15 N -0.705 5.705 16 C 0.491 3.509 17 O -0.574 6.574 18 C 0.066 3.934 19 H 0.189 0.811 20 C -0.093 4.093 21 C -0.156 4.156 22 C -0.109 4.109 23 C 0.052 3.948 24 F -0.144 7.144 25 C -0.116 4.116 26 C -0.114 4.114 27 C 0.081 3.919 28 O -0.287 6.287 29 C 0.138 3.862 30 H 0.246 0.754 31 H 0.068 0.932 32 H -0.008 1.008 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.419 0.581 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.153 0.847 43 H 0.035 0.965 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.946 -22.161 -0.885 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.221 1.221 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.163 4.163 12 C -0.111 4.111 13 H 0.120 0.880 14 C 0.020 3.980 15 N -0.359 5.359 16 C 0.277 3.723 17 O -0.453 6.453 18 C 0.007 3.993 19 H 0.206 0.794 20 C -0.130 4.130 21 C -0.157 4.157 22 C -0.128 4.128 23 C 0.033 3.967 24 F -0.123 7.123 25 C -0.134 4.134 26 C -0.133 4.133 27 C 0.036 3.964 28 O -0.200 6.200 29 C 0.013 3.987 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.010 0.990 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.162 0.838 39 H 0.127 0.873 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.053 0.947 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.515 -22.358 -0.123 24.707 hybrid contribution 0.482 1.606 -0.044 1.678 sum 10.997 -20.752 -0.167 23.486 Atomic orbital electron populations 1.70052 1.06192 1.25035 1.58646 1.25620 0.96616 1.00973 1.02846 0.85154 0.77140 0.78883 0.78184 1.22087 1.20518 1.20219 1.19416 0.91019 0.83896 1.42474 0.90145 1.44818 1.02795 1.01070 1.86830 1.21721 0.84153 0.94808 0.96647 1.22850 0.97974 0.95638 0.99877 1.22280 0.95610 0.93149 1.00084 0.88006 1.21193 0.90894 0.90599 0.95273 1.45839 1.40948 1.25286 1.23810 1.21465 0.83543 0.81659 0.85603 1.90735 1.60274 1.71634 1.22665 1.23674 0.94085 0.84690 0.96866 0.79398 1.21941 0.92344 1.02374 0.96300 1.20806 0.97703 0.98340 0.98848 1.20416 0.97486 1.01200 0.93659 1.17629 0.88831 0.97184 0.93036 1.91489 1.54955 1.89030 1.76830 1.21101 0.94984 0.95745 1.01581 1.20363 0.98665 1.02820 0.91449 1.19880 0.89129 0.95758 0.91675 1.86931 1.51783 1.33704 1.47542 1.21524 0.94720 0.84528 0.97965 0.94389 0.91356 0.99011 0.92266 0.89227 0.93281 0.90722 0.74355 0.83773 0.87324 0.82891 0.81591 0.82965 0.94727 0.96319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 10.09 21.65 0.22 -55.89 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 3 Si 0.98 45.11 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.14 10.27 84.03 0.86 -12.27 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.63 -31.23 3.39 -691.99 -2.35 -33.58 16 10 C 0.15 7.22 5.89 86.85 0.51 7.73 16 11 C -0.12 -4.28 6.53 31.98 0.21 -4.07 16 12 C -0.09 -2.63 2.94 -9.61 -0.03 -2.66 16 13 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 14 C 0.14 3.67 5.03 86.38 0.43 4.10 16 15 N -0.71 -13.84 5.47 -463.06 -2.53 -16.37 16 16 C 0.49 11.31 7.03 87.66 0.62 11.93 16 17 O -0.57 -19.31 16.46 15.15 0.25 -19.06 16 18 C 0.07 1.01 4.11 30.43 0.13 1.14 16 19 H 0.19 1.16 8.14 -2.39 -0.02 1.14 16 20 C -0.09 -1.15 6.64 30.73 0.20 -0.95 16 21 C -0.16 -2.98 6.26 -19.52 -0.12 -3.10 16 22 C -0.11 -2.09 10.02 22.23 0.22 -1.87 16 23 C 0.05 1.07 7.31 22.40 0.16 1.23 16 24 F -0.14 -3.13 17.27 44.97 0.78 -2.35 16 25 C -0.12 -2.07 10.00 22.25 0.22 -1.85 16 26 C -0.11 -2.24 10.06 22.45 0.23 -2.01 16 27 C 0.08 1.77 6.83 22.67 0.15 1.93 16 28 O -0.29 -6.27 10.43 -77.52 -0.81 -7.08 16 29 C 0.14 5.07 6.77 86.73 0.59 5.66 16 30 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.07 3.79 5.87 -2.39 -0.01 3.78 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 1.49 7.95 -2.38 -0.02 1.47 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.42 5.48 8.47 -92.71 -0.79 4.70 16 38 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.28 7.91 -2.39 -0.02 1.26 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.17 2.06 8.06 -2.92 -0.02 2.04 16 42 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.02 0.71 7.70 -2.39 -0.02 0.70 16 Total: -1.00 -76.63 368.43 2.68 -73.95 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.25 Total: 11.66 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.86 Total: 1.59 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.66 Total: -105.84 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.56 Total: -26.14 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.63 2.68 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028841914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.753 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds