Wall clock time and date at job start Tue Mar 31 2020 18:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48506 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47175 * 299.99684 * 3 2 1 6 6 H 1.48504 * 109.47151 * 60.00148 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00386 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64660 * 359.95385 * 9 7 2 11 11 C 1.54322 * 107.27238 * 181.09550 * 10 9 7 12 12 C 1.55152 * 102.94379 * 22.19405 * 11 10 9 13 13 H 1.08999 * 111.03763 * 82.58133 * 12 11 10 14 14 C 1.52998 * 111.00575 * 206.42431 * 12 11 10 15 15 N 1.46504 * 109.47205 * 178.64532 * 14 12 11 16 16 C 1.34778 * 119.99931 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00075 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99925 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.66932 * 53.23499 * 18 16 15 20 20 C 1.54704 * 110.74679 * 289.81605 * 18 16 15 21 21 C 1.51650 * 101.94876 * 266.90244 * 20 18 16 22 22 C 1.37755 * 132.13499 * 164.40922 * 21 20 18 23 23 C 1.38532 * 119.95835 * 180.87311 * 22 21 20 24 24 F 1.35101 * 120.14325 * 179.97438 * 23 22 21 25 25 C 1.38472 * 119.71280 * 0.02562 * 23 22 21 26 26 C 1.37933 * 120.32605 * 359.81618 * 25 23 22 27 27 C 1.38859 * 107.05357 * 344.86282 * 21 20 18 28 28 O 1.36194 * 111.21586 * 358.56749 * 27 21 20 29 29 C 1.47426 * 125.65287 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00059 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88460 * 300.51656 * 10 9 7 32 32 H 1.09007 * 109.88347 * 61.67865 * 10 9 7 33 33 H 1.09006 * 110.72150 * 263.82961 * 11 10 9 34 34 H 1.09005 * 110.71948 * 140.55503 * 11 10 9 35 35 H 1.09004 * 109.47245 * 58.64933 * 14 12 11 36 36 H 1.08996 * 109.47249 * 298.64740 * 14 12 11 37 37 H 0.96995 * 119.99676 * 0.02562 * 15 14 12 38 38 H 1.09006 * 110.93297 * 148.74316 * 20 18 16 39 39 H 1.08994 * 110.93936 * 25.06838 * 20 18 16 40 40 H 1.07997 * 120.01633 * 0.89083 * 22 21 20 41 41 H 1.08006 * 119.83355 * 179.78965 * 25 23 22 42 42 H 1.08003 * 119.86334 * 180.02562 * 26 25 23 43 43 H 1.08994 * 110.36439 * 37.00076 * 29 9 7 44 44 H 1.09001 * 110.36498 * 274.67356 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0010 11 6 -0.4484 -4.0441 0.0290 12 6 0.8520 -4.6557 0.6138 13 1 0.8577 -4.5955 1.7021 14 6 1.0370 -6.1007 0.1464 15 7 2.2884 -6.6337 0.6908 16 6 2.6609 -7.8982 0.4100 17 8 1.9604 -8.5947 -0.2936 18 6 3.9478 -8.4466 0.9704 19 1 3.9819 -8.3184 2.0523 20 6 5.1685 -7.7767 0.2964 21 6 5.4694 -8.7394 -0.8361 22 6 6.2368 -8.6172 -1.9736 23 6 6.3239 -9.6733 -2.8659 24 9 7.0749 -9.5574 -3.9830 25 6 5.6371 -10.8478 -2.6086 26 6 4.8714 -10.9712 -1.4679 27 6 4.7831 -9.9154 -0.5640 28 8 4.1087 -9.8308 0.6162 29 6 1.9334 -3.7312 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5574 -2.0515 0.8842 32 1 -0.5546 -2.0852 -0.9012 33 1 -0.6319 -4.4189 -0.9781 34 1 -1.2983 -4.2510 0.6794 35 1 1.0736 -6.1285 -0.9426 36 1 0.2012 -6.7059 0.4974 37 1 2.8484 -6.0768 1.2538 38 1 6.0091 -7.7135 0.9876 39 1 4.9083 -6.7910 -0.0892 40 1 6.7702 -7.6989 -2.1694 41 1 5.7009 -11.6711 -3.3047 42 1 4.3391 -11.8908 -1.2744 43 1 2.8333 -3.7402 0.6155 44 1 2.1657 -4.0424 -1.0179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028841915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:18 Heat of formation + Delta-G solvation = -58.318094 kcal Electronic energy + Delta-G solvation = -28112.157989 eV Core-core repulsion = 23945.140999 eV Total energy + Delta-G solvation = -4167.016990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.09049 -41.83375 -39.42706 -37.80798 -37.26514 -34.80878 -33.31388 -32.50225 -30.48764 -29.99189 -29.54107 -28.23682 -25.85092 -24.79651 -23.42269 -22.78132 -22.21582 -20.91445 -20.02040 -19.88757 -18.22012 -17.77321 -17.57260 -17.07088 -16.82264 -16.04683 -15.88992 -15.59110 -15.30777 -14.75775 -14.62811 -14.57500 -14.31297 -13.74847 -13.67440 -13.53247 -13.34010 -13.13494 -13.05028 -12.72559 -12.42010 -12.20253 -11.99939 -11.79408 -11.68185 -11.45439 -11.17815 -10.94898 -10.85595 -10.49434 -10.19716 -10.05473 -9.94954 -9.81455 -9.71289 -9.40001 -9.12136 -8.65342 -8.36123 -6.88837 -5.76332 -3.10254 0.75547 0.84803 2.30725 2.61824 3.09904 3.22854 3.35973 3.41256 3.43965 3.73019 3.98695 4.18739 4.39247 4.43283 4.45276 4.68319 4.74015 4.84278 5.00854 5.12097 5.16414 5.17291 5.29094 5.34774 5.48164 5.48488 5.61742 5.72317 5.79581 5.81727 5.92465 5.95985 5.98421 6.17815 6.27460 6.29891 6.41121 6.47115 6.60058 6.72061 6.83327 7.33832 7.51004 7.58160 7.77916 8.02173 8.20806 9.16833 9.77316 10.42944 11.35426 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002473 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.203045 B =11319.101883 C =12419.746845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.718 5.718 16 C 0.494 3.506 17 O -0.523 6.523 18 C 0.063 3.937 19 H 0.146 0.854 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.100 4.100 23 C 0.069 3.931 24 F -0.138 7.138 25 C -0.117 4.117 26 C -0.104 4.104 27 C 0.106 3.894 28 O -0.271 6.271 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.035 0.965 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.527 -20.493 1.470 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.278 3.722 17 O -0.398 6.398 18 C 0.003 3.997 19 H 0.163 0.837 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.119 4.119 23 C 0.050 3.950 24 F -0.117 7.117 25 C -0.136 4.136 26 C -0.123 4.123 27 C 0.060 3.940 28 O -0.183 6.183 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.053 0.947 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.891 -20.934 1.053 23.177 hybrid contribution 0.764 1.432 0.044 1.624 sum 10.654 -19.502 1.096 22.249 Atomic orbital electron populations 1.69974 1.04903 1.24979 1.56996 1.24814 0.95731 0.97729 1.02191 0.86050 0.78687 0.83756 0.77280 1.20506 1.21721 1.21734 1.19084 0.90419 0.82405 1.43891 0.90430 1.44484 1.01740 0.99843 1.87189 1.21156 0.84313 0.88144 1.01165 1.22866 0.95399 0.99415 0.99711 1.22632 0.98762 0.91825 1.00580 0.90103 1.21448 0.84791 0.93909 0.98894 1.46006 1.25154 1.13172 1.52737 1.20765 0.87457 0.82400 0.81612 1.90748 1.54031 1.58107 1.36924 1.23382 0.93293 0.80718 1.02270 0.83715 1.21816 0.97225 0.99336 0.95318 1.20479 1.00625 0.96493 0.97129 1.20201 0.99977 0.98978 0.92763 1.17364 0.96765 0.95483 0.85437 1.91506 1.74126 1.96486 1.49533 1.20854 0.97485 0.97281 0.97952 1.20074 1.01346 0.98994 0.91854 1.19539 0.92243 0.95270 0.86934 1.86960 1.72863 1.24800 1.33655 1.21566 0.93905 0.86240 0.96689 0.93755 0.93501 0.93875 0.92188 0.91906 0.91242 0.91469 0.76220 0.87211 0.87721 0.84201 0.83780 0.84205 0.94681 0.96362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -14.88 3.39 -170.06 -0.58 -15.46 16 10 C 0.18 4.15 5.37 -3.06 -0.02 4.14 16 11 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16 12 C -0.12 -1.82 3.11 -88.46 -0.27 -2.10 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 1.78 5.12 -4.04 -0.02 1.76 16 15 N -0.72 -8.02 5.40 -60.29 -0.33 -8.35 16 16 C 0.49 6.14 7.03 -10.98 -0.08 6.06 16 17 O -0.52 -8.83 16.45 -13.48 -0.22 -9.06 16 18 C 0.06 0.58 4.11 -26.99 -0.11 0.47 16 19 H 0.15 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.10 -0.78 6.64 -26.52 -0.18 -0.95 16 21 C -0.15 -1.50 6.26 -104.10 -0.65 -2.15 16 22 C -0.10 -1.00 10.02 -39.65 -0.40 -1.40 16 23 C 0.07 0.71 7.31 -39.39 -0.29 0.42 16 24 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 25 C -0.12 -1.07 10.00 -39.61 -0.40 -1.47 16 26 C -0.10 -1.04 10.06 -39.31 -0.40 -1.43 16 27 C 0.11 1.20 6.82 -38.97 -0.27 0.94 16 28 O -0.27 -3.17 10.44 -39.40 -0.41 -3.59 16 29 C 0.14 2.68 6.41 -2.52 -0.02 2.66 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 3.52 8.34 -40.82 -0.34 3.18 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.78 7.91 -51.93 -0.41 0.37 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -34.01 369.03 -10.01 -44.03 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.13 Total: 0.03 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.50 Total: -2.27 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.33 Total: -49.88 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.63 Total: -12.64 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.01 -10.01 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028841915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.291 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds