Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47453 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47038 * 300.00435 * 3 2 1 6 6 H 1.48498 * 109.47138 * 60.00092 * 3 2 1 7 7 C 1.38816 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00064 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.65029 * 359.97023 * 9 7 2 11 11 C 1.54326 * 107.27183 * 178.98041 * 10 9 7 12 12 C 1.55161 * 102.94018 * 337.80804 * 11 10 9 13 13 H 1.08999 * 111.00445 * 277.38749 * 12 11 10 14 14 C 1.53007 * 111.00172 * 153.57947 * 12 11 10 15 15 N 1.46497 * 109.46741 * 178.18002 * 14 12 11 16 16 C 1.34781 * 119.99615 * 179.97438 * 15 14 12 17 17 O 1.21634 * 119.99947 * 0.02562 * 16 15 14 18 18 C 1.47190 * 119.99966 * 179.97438 * 16 15 14 19 19 C 1.35625 * 123.18857 * 359.97438 * 18 16 15 20 20 S 1.70269 * 110.84525 * 180.02562 * 19 18 16 21 21 C 1.75597 * 92.62459 * 359.97438 * 20 19 18 22 22 C 1.34012 * 110.59918 * 359.97438 * 21 20 19 23 23 C 1.52013 * 123.46415 * 180.02562 * 22 21 20 24 24 C 1.53062 * 108.74896 * 342.82594 * 23 22 21 25 25 C 1.53154 * 109.19791 * 50.67468 * 24 23 22 26 26 C 1.51604 * 125.05122 * 179.97438 * 21 20 19 27 27 C 1.47475 * 125.62916 * 179.97438 * 9 7 2 28 28 H 0.96991 * 120.00458 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.88176 * 59.56239 * 10 9 7 30 30 H 1.08996 * 110.01392 * 298.47306 * 10 9 7 31 31 H 1.08998 * 110.72182 * 219.44868 * 11 10 9 32 32 H 1.08992 * 110.87607 * 96.24268 * 11 10 9 33 33 H 1.08998 * 109.46923 * 58.17863 * 14 12 11 34 34 H 1.09001 * 109.46753 * 298.17628 * 14 12 11 35 35 H 0.96994 * 120.00225 * 359.97438 * 15 14 12 36 36 H 1.08006 * 124.57744 * 359.75882 * 19 18 16 37 37 H 1.09002 * 109.58891 * 102.64560 * 23 22 21 38 38 H 1.08997 * 109.59200 * 223.08454 * 23 22 21 39 39 H 1.09003 * 109.53357 * 290.75038 * 24 23 22 40 40 H 1.08998 * 109.55521 * 170.61472 * 24 23 22 41 41 H 1.08998 * 109.54425 * 169.74103 * 25 24 23 42 42 H 1.09003 * 109.53854 * 49.49063 * 25 24 23 43 43 H 1.08994 * 109.60003 * 283.13842 * 26 21 20 44 44 H 1.09006 * 109.59111 * 43.44328 * 26 21 20 45 45 H 1.09003 * 110.34560 * 85.25215 * 27 9 7 46 46 H 1.09000 * 110.40345 * 322.91588 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0442 -0.0261 12 6 0.8515 -4.6561 -0.6118 13 1 0.8554 -4.5968 -1.7002 14 6 1.0369 -6.1009 -0.1437 15 7 2.2484 -6.6589 -0.7497 16 6 2.6147 -7.9273 -0.4785 17 8 1.9391 -8.6088 0.2689 18 6 3.8316 -8.4881 -1.0877 19 6 4.6306 -7.7875 -1.9303 20 16 5.9459 -8.7369 -2.4477 21 6 5.4186 -10.1236 -1.5084 22 6 4.2899 -9.8409 -0.8434 23 6 3.5788 -10.8343 0.0612 24 6 4.0878 -12.2421 -0.2580 25 6 5.6192 -12.2404 -0.2388 26 6 6.1336 -11.4592 -1.4510 27 6 1.9341 -3.7314 -0.0016 28 1 -0.4850 0.8399 0.0004 29 1 -0.5582 -2.0521 -0.8826 30 1 -0.5560 -2.0841 0.9014 31 1 -1.2989 -4.2515 -0.6755 32 1 -0.6325 -4.4206 0.9801 33 1 0.1736 -6.6941 -0.4451 34 1 1.1310 -6.1217 0.9421 35 1 2.7869 -6.1155 -1.3460 36 1 4.4540 -6.7666 -2.2356 37 1 3.7907 -10.5961 1.1036 38 1 2.5045 -10.7859 -0.1159 39 1 3.7363 -12.5416 -1.2454 40 1 3.7150 -12.9429 0.4890 41 1 5.9856 -13.2660 -0.2836 42 1 5.9718 -11.7658 0.6769 43 1 5.9298 -12.0224 -2.3615 44 1 7.2070 -11.2953 -1.3550 45 1 2.1684 -4.0422 1.0166 46 1 2.8328 -3.7410 -0.6183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028972771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = -2.141954 kcal Electronic energy + Delta-G solvation = -25915.547354 eV Core-core repulsion = 22317.179520 eV Total energy + Delta-G solvation = -3598.367834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15775 -38.63574 -37.55347 -35.21454 -34.61992 -32.49999 -31.01381 -30.08615 -29.23575 -28.16320 -25.83107 -24.75153 -23.58453 -23.34204 -22.00128 -20.38044 -19.96908 -19.51624 -18.44132 -17.79804 -17.06872 -16.67031 -15.80442 -15.49901 -14.79396 -14.76503 -14.63168 -14.52145 -14.10200 -14.05580 -13.60887 -13.42232 -13.28377 -12.90327 -12.88635 -12.43965 -12.35247 -12.02466 -11.82082 -11.71488 -11.66108 -11.39268 -11.11105 -10.96489 -10.91149 -10.82486 -10.60880 -10.39807 -10.14256 -10.00264 -9.89278 -9.69850 -9.65326 -9.01790 -8.81923 -8.61880 -8.48810 -6.84757 -5.72857 -3.06451 0.57876 1.29057 1.71690 1.81295 3.23354 3.34151 3.38255 3.43631 3.46218 4.26609 4.47752 4.52174 4.60075 4.68697 4.86140 4.95188 5.02287 5.14968 5.22785 5.24606 5.30902 5.32831 5.40990 5.50477 5.53415 5.61028 5.65640 5.68552 5.80072 5.87898 5.89494 6.01843 6.04260 6.05447 6.07471 6.33405 6.38227 6.44633 6.47908 6.52610 6.67645 6.89689 7.54657 7.55494 7.62007 7.81654 8.24423 8.25132 9.20639 9.80932 10.47036 11.38977 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002315 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.037761 B =12091.880143 C =13099.367895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.719 5.719 16 C 0.573 3.427 17 O -0.538 6.538 18 C -0.145 4.145 19 C -0.213 4.213 20 S 0.180 5.820 21 C -0.212 4.212 22 C -0.051 4.051 23 C -0.053 4.053 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.043 4.043 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.171 0.829 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.020 0.980 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 -24.439 -4.936 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.011 3.989 15 N -0.370 5.370 16 C 0.359 3.641 17 O -0.416 6.416 18 C -0.163 4.163 19 C -0.351 4.351 20 S 0.449 5.551 21 C -0.328 4.328 22 C -0.062 4.062 23 C -0.092 4.092 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.082 4.082 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.189 0.811 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.037 0.963 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.340 -24.353 -5.386 27.398 hybrid contribution -0.562 1.358 0.546 1.568 sum 10.778 -22.995 -4.840 25.852 Atomic orbital electron populations 1.69971 1.04880 1.24931 1.57133 1.24814 0.95738 0.97704 1.02292 0.86045 0.78685 0.83775 0.77256 1.20533 1.21757 1.21728 1.19096 0.90428 0.82436 1.43700 0.90459 1.44500 1.01744 0.99854 1.87180 1.21141 0.84293 0.88170 1.01142 1.22855 0.95382 0.99369 0.99725 1.22621 0.98674 0.92022 1.00480 0.90274 1.21417 0.85944 0.93441 0.98139 1.45948 1.28181 1.13223 1.49660 1.17605 0.84000 0.81582 0.80957 1.90754 1.54510 1.59513 1.36854 1.20165 0.98444 0.94840 1.02861 1.25477 1.00958 1.05159 1.03542 1.82895 1.24208 1.02236 1.45716 1.24685 1.01383 1.00655 1.06087 1.20398 0.94321 0.92942 0.98525 1.20531 1.00331 0.90762 0.97603 1.21633 0.95287 0.96923 1.02137 1.21584 0.96179 0.99866 0.97918 1.20288 0.98584 0.89828 0.99507 1.21577 0.93889 0.86176 0.96761 0.93787 0.93559 0.93874 0.91966 0.92156 0.91528 0.91197 0.76612 0.81147 0.90271 0.89067 0.91731 0.91218 0.91173 0.91390 0.90357 0.90545 0.96266 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.40 3.40 -170.04 -0.58 -15.98 16 10 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 11 C -0.13 -2.45 6.42 -24.89 -0.16 -2.61 16 12 C -0.12 -1.96 3.07 -88.47 -0.27 -2.23 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.96 5.12 -4.04 -0.02 1.94 16 15 N -0.72 -9.60 5.42 -61.45 -0.33 -9.93 16 16 C 0.57 8.28 7.79 -12.62 -0.10 8.18 16 17 O -0.54 -9.16 14.60 5.25 0.08 -9.09 16 18 C -0.14 -1.79 5.97 -104.56 -0.62 -2.41 16 19 C -0.21 -2.16 10.35 29.80 0.31 -1.85 16 20 S 0.18 1.54 22.99 -107.50 -2.47 -0.93 16 21 C -0.21 -2.01 6.32 -35.35 -0.22 -2.23 16 22 C -0.05 -0.59 5.95 -102.82 -0.61 -1.20 16 23 C -0.05 -0.57 5.07 -27.20 -0.14 -0.71 16 24 C -0.12 -0.95 5.90 -26.62 -0.16 -1.11 16 25 C -0.12 -0.78 5.93 -26.59 -0.16 -0.93 16 26 C -0.04 -0.30 6.26 -27.38 -0.17 -0.47 16 27 C 0.14 2.86 6.56 -2.51 -0.02 2.84 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.40 4.62 6.90 -40.82 -0.28 4.33 16 36 H 0.17 1.42 6.97 -52.48 -0.37 1.05 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.13 6.93 -51.93 -0.36 0.77 16 39 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -32.33 374.79 -11.94 -44.26 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.22 Total: 0.92 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.61 Total: -5.41 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.34 Total: -52.47 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.33 -11.94 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028972771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.121 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds