Wall clock time and date at job start Tue Mar 31 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47453 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47038 * 300.00435 * 3 2 1 6 6 H 1.48498 * 109.47138 * 60.00092 * 3 2 1 7 7 C 1.38816 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00064 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.65029 * 359.97023 * 9 7 2 11 11 C 1.54326 * 107.27183 * 178.98041 * 10 9 7 12 12 C 1.55161 * 102.94018 * 337.80804 * 11 10 9 13 13 H 1.08999 * 111.00445 * 277.38749 * 12 11 10 14 14 C 1.53007 * 111.00172 * 153.57947 * 12 11 10 15 15 N 1.46497 * 109.46741 * 178.18002 * 14 12 11 16 16 C 1.34781 * 119.99615 * 179.97438 * 15 14 12 17 17 O 1.21634 * 119.99947 * 0.02562 * 16 15 14 18 18 C 1.47190 * 119.99966 * 179.97438 * 16 15 14 19 19 C 1.35625 * 123.18857 * 359.97438 * 18 16 15 20 20 S 1.70269 * 110.84525 * 180.02562 * 19 18 16 21 21 C 1.75597 * 92.62459 * 359.97438 * 20 19 18 22 22 C 1.34012 * 110.59918 * 359.97438 * 21 20 19 23 23 C 1.52013 * 123.46415 * 180.02562 * 22 21 20 24 24 C 1.53062 * 108.74896 * 342.82594 * 23 22 21 25 25 C 1.53154 * 109.19791 * 50.67468 * 24 23 22 26 26 C 1.51604 * 125.05122 * 179.97438 * 21 20 19 27 27 C 1.47475 * 125.62916 * 179.97438 * 9 7 2 28 28 H 0.96991 * 120.00458 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.88176 * 59.56239 * 10 9 7 30 30 H 1.08996 * 110.01392 * 298.47306 * 10 9 7 31 31 H 1.08998 * 110.72182 * 219.44868 * 11 10 9 32 32 H 1.08992 * 110.87607 * 96.24268 * 11 10 9 33 33 H 1.08998 * 109.46923 * 58.17863 * 14 12 11 34 34 H 1.09001 * 109.46753 * 298.17628 * 14 12 11 35 35 H 0.96994 * 120.00225 * 359.97438 * 15 14 12 36 36 H 1.08006 * 124.57744 * 359.75882 * 19 18 16 37 37 H 1.09002 * 109.58891 * 102.64560 * 23 22 21 38 38 H 1.08997 * 109.59200 * 223.08454 * 23 22 21 39 39 H 1.09003 * 109.53357 * 290.75038 * 24 23 22 40 40 H 1.08998 * 109.55521 * 170.61472 * 24 23 22 41 41 H 1.08998 * 109.54425 * 169.74103 * 25 24 23 42 42 H 1.09003 * 109.53854 * 49.49063 * 25 24 23 43 43 H 1.08994 * 109.60003 * 283.13842 * 26 21 20 44 44 H 1.09006 * 109.59111 * 43.44328 * 26 21 20 45 45 H 1.09003 * 110.34560 * 85.25215 * 27 9 7 46 46 H 1.09000 * 110.40345 * 322.91588 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0442 -0.0261 12 6 0.8515 -4.6561 -0.6118 13 1 0.8554 -4.5968 -1.7002 14 6 1.0369 -6.1009 -0.1437 15 7 2.2484 -6.6589 -0.7497 16 6 2.6147 -7.9273 -0.4785 17 8 1.9391 -8.6088 0.2689 18 6 3.8316 -8.4881 -1.0877 19 6 4.6306 -7.7875 -1.9303 20 16 5.9459 -8.7369 -2.4477 21 6 5.4186 -10.1236 -1.5084 22 6 4.2899 -9.8409 -0.8434 23 6 3.5788 -10.8343 0.0612 24 6 4.0878 -12.2421 -0.2580 25 6 5.6192 -12.2404 -0.2388 26 6 6.1336 -11.4592 -1.4510 27 6 1.9341 -3.7314 -0.0016 28 1 -0.4850 0.8399 0.0004 29 1 -0.5582 -2.0521 -0.8826 30 1 -0.5560 -2.0841 0.9014 31 1 -1.2989 -4.2515 -0.6755 32 1 -0.6325 -4.4206 0.9801 33 1 0.1736 -6.6941 -0.4451 34 1 1.1310 -6.1217 0.9421 35 1 2.7869 -6.1155 -1.3460 36 1 4.4540 -6.7666 -2.2356 37 1 3.7907 -10.5961 1.1036 38 1 2.5045 -10.7859 -0.1159 39 1 3.7363 -12.5416 -1.2454 40 1 3.7150 -12.9429 0.4890 41 1 5.9856 -13.2660 -0.2836 42 1 5.9718 -11.7658 0.6769 43 1 5.9298 -12.0224 -2.3615 44 1 7.2070 -11.2953 -1.3550 45 1 2.1684 -4.0422 1.0166 46 1 2.8328 -3.7410 -0.6183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028972771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:44 Heat of formation + Delta-G solvation = -20.772593 kcal Electronic energy + Delta-G solvation = -25916.355240 eV Core-core repulsion = 22317.179520 eV Total energy + Delta-G solvation = -3599.175719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16196 -39.65800 -38.98637 -36.13800 -35.87354 -34.28817 -31.75484 -31.65992 -30.40072 -29.53869 -27.41545 -26.09413 -24.71953 -24.20585 -22.85509 -21.98309 -21.46772 -20.68153 -19.19205 -18.89455 -18.57620 -17.84978 -17.12349 -16.66881 -16.53754 -15.94198 -15.65686 -15.50417 -15.26788 -14.90384 -14.75472 -14.63605 -14.21126 -14.05195 -13.93635 -13.80330 -13.61729 -13.41363 -13.13286 -13.02576 -12.77739 -12.67057 -12.49500 -12.36766 -11.99200 -11.91926 -11.87124 -11.70995 -11.60985 -11.56593 -11.48348 -11.24515 -10.81401 -10.72693 -10.15581 -9.57114 -9.24044 -8.91411 -7.86346 -5.22054 -0.22555 0.57936 0.94218 0.95651 1.44985 1.46025 1.56284 2.16311 2.31866 2.48250 3.31964 3.56284 3.60410 3.75218 3.85860 3.97942 4.00464 4.03694 4.05638 4.11333 4.27725 4.35782 4.42381 4.59272 4.60419 4.64522 4.69435 4.70046 4.78325 4.88746 4.91448 5.00470 5.01281 5.03804 5.06271 5.12153 5.21815 5.32439 5.35788 5.44445 5.44802 5.45704 5.61143 5.66340 5.76842 6.18818 6.50541 7.09159 7.18067 7.76512 8.41021 9.24427 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002315 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.037761 B =12091.880143 C =13099.367895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.090 0.910 14 C 0.146 3.854 15 N -0.713 5.713 16 C 0.571 3.429 17 O -0.572 6.572 18 C -0.174 4.174 19 C -0.216 4.216 20 S 0.234 5.766 21 C -0.212 4.212 22 C -0.080 4.080 23 C -0.051 4.051 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.045 4.045 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.013 0.987 30 H 0.004 0.996 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.409 0.591 36 H 0.187 0.813 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.017 0.983 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -26.063 -6.337 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.108 0.892 14 C 0.022 3.978 15 N -0.365 5.365 16 C 0.358 3.642 17 O -0.453 6.453 18 C -0.192 4.192 19 C -0.354 4.354 20 S 0.504 5.496 21 C -0.329 4.329 22 C -0.090 4.090 23 C -0.091 4.091 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.084 4.084 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.034 0.966 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.817 -26.002 -6.802 30.221 hybrid contribution -1.245 1.845 0.961 2.424 sum 12.572 -24.157 -5.842 27.853 Atomic orbital electron populations 1.70195 1.06341 1.25199 1.58417 1.25683 0.96647 1.01135 1.02737 0.84999 0.78226 0.79376 0.76667 1.18846 1.21808 1.22122 1.19506 0.91033 0.83723 1.42727 0.89870 1.44828 1.02503 1.01202 1.86988 1.20913 0.83806 0.91772 0.97715 1.22720 0.97117 0.94988 1.01290 1.22417 0.96091 0.92246 1.00727 0.89171 1.21172 0.86971 0.92085 0.97524 1.45830 1.27856 1.13168 1.49620 1.17966 0.84393 0.81403 0.80431 1.90733 1.55781 1.60347 1.38486 1.20100 0.98562 0.95836 1.04739 1.25775 1.01098 1.06051 1.02470 1.82726 1.22220 1.00685 1.43939 1.25112 1.00667 1.02125 1.04968 1.20514 0.95597 0.92960 0.99940 1.20440 0.98996 0.92782 0.96851 1.21613 0.96427 0.95053 1.02448 1.21586 0.94935 1.01152 0.97590 1.20460 0.99207 0.88545 1.00214 1.21750 0.95327 0.84480 0.97115 0.94430 0.96829 0.97789 0.89532 0.91080 0.90626 0.92252 0.75455 0.79578 0.91786 0.91591 0.91508 0.90370 0.88860 0.92110 0.88860 0.88850 0.96554 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.88 10.31 21.65 0.22 -57.66 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 3 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 7 C -0.24 -13.51 10.28 84.03 0.86 -12.65 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -32.25 3.40 -691.88 -2.35 -34.60 16 10 C 0.18 9.08 5.37 86.73 0.47 9.54 16 11 C -0.12 -4.36 6.42 31.79 0.20 -4.16 16 12 C -0.10 -3.01 3.07 -9.40 -0.03 -3.04 16 13 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 14 C 0.15 4.08 5.12 86.38 0.44 4.53 16 15 N -0.71 -18.20 5.42 -466.58 -2.53 -20.73 16 16 C 0.57 16.40 7.79 86.59 0.67 17.07 16 17 O -0.57 -19.98 14.60 -4.14 -0.06 -20.04 16 18 C -0.17 -4.18 5.97 -19.82 -0.12 -4.30 16 19 C -0.22 -3.94 10.35 67.21 0.70 -3.25 16 20 S 0.23 3.35 22.99 -56.49 -1.30 2.05 16 21 C -0.21 -3.59 6.32 25.01 0.16 -3.43 16 22 C -0.08 -1.79 5.95 -18.70 -0.11 -1.90 16 23 C -0.05 -1.13 5.07 30.29 0.15 -0.98 16 24 C -0.12 -1.73 5.90 30.67 0.18 -1.55 16 25 C -0.11 -1.26 5.93 30.68 0.18 -1.08 16 26 C -0.05 -0.49 6.26 30.17 0.19 -0.30 16 27 C 0.14 5.43 6.56 86.84 0.57 6.00 16 28 H 0.25 14.53 8.31 -92.72 -0.77 13.76 16 29 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 30 H 0.00 0.22 7.50 -2.39 -0.02 0.20 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 35 H 0.41 8.69 6.90 -92.71 -0.64 8.06 16 36 H 0.19 2.63 6.97 -2.91 -0.02 2.61 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.74 6.93 -2.39 -0.02 1.73 16 39 H 0.07 0.94 8.10 -2.39 -0.02 0.93 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.58 374.79 1.35 -71.24 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.34 Total: 14.80 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.99 Total: -3.00 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.65 Total: -112.99 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.30 Total: 2.05 kcal Total: -72.58 1.35 -71.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028972771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.464 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds