Wall clock time and date at job start Tue Mar 31 2020 18:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64709 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.83070 * 204.09032 * 10 9 7 12 12 C 1.55151 * 101.58341 * 322.99186 * 11 10 9 13 13 H 1.08999 * 110.71802 * 277.13604 * 12 11 10 14 14 C 1.52998 * 110.72221 * 154.04523 * 12 11 10 15 15 N 1.46498 * 109.47438 * 174.99939 * 14 12 11 16 16 C 1.34772 * 120.00237 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99926 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.66889 * 301.76816 * 18 16 15 20 20 C 1.54699 * 110.75142 * 64.99744 * 18 16 15 21 21 C 1.51654 * 101.93522 * 143.59998 * 20 18 16 22 22 C 1.37805 * 132.15597 * 164.57693 * 21 20 18 23 23 C 1.38324 * 120.02170 * 180.37299 * 22 21 20 24 24 C 1.38299 * 119.78580 * 0.03161 * 23 22 21 25 25 C 1.38101 * 120.32010 * 359.78218 * 24 23 22 26 26 F 1.35097 * 119.89857 * 180.02562 * 25 24 23 27 27 C 1.38789 * 107.04716 * 344.61822 * 21 20 18 28 28 O 1.36195 * 111.25017 * 358.92554 * 27 21 20 29 29 C 1.47023 * 125.65252 * 179.71302 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36756 * 322.92683 * 10 9 7 32 32 H 1.08993 * 110.36856 * 85.25403 * 10 9 7 33 33 H 1.09000 * 111.00222 * 81.06850 * 11 10 9 34 34 H 1.09001 * 111.00498 * 204.91470 * 11 10 9 35 35 H 1.09006 * 109.47185 * 294.99842 * 14 12 11 36 36 H 1.08999 * 109.47163 * 54.99572 * 14 12 11 37 37 H 0.96997 * 119.99546 * 359.97438 * 15 14 12 38 38 H 1.09000 * 110.93625 * 261.75348 * 20 18 16 39 39 H 1.08994 * 110.94301 * 25.40780 * 20 18 16 40 40 H 1.07997 * 119.98992 * 0.36431 * 22 21 20 41 41 H 1.07999 * 120.10590 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.83732 * 179.80144 * 24 23 22 43 43 H 1.08998 * 109.88037 * 298.40056 * 29 9 7 44 44 H 1.08998 * 109.87956 * 59.56130 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4021 -3.9323 0.6111 12 6 0.7783 -4.7524 0.0269 13 1 0.5464 -5.0980 -0.9805 14 6 1.1194 -5.9339 0.9372 15 7 2.1536 -6.7557 0.3037 16 6 2.6136 -7.8585 0.9270 17 8 2.1718 -8.1704 2.0127 18 6 3.6779 -8.7036 0.2756 19 1 3.3430 -9.0606 -0.6983 20 6 5.0013 -7.9134 0.1445 21 6 6.0370 -8.9923 0.3956 22 6 7.3944 -9.0435 0.1631 23 6 8.1101 -10.1813 0.4896 24 6 7.4589 -11.2657 1.0488 25 6 6.0994 -11.2158 1.2865 26 9 5.4720 -12.2799 1.8336 27 6 5.3722 -10.0704 0.9630 28 8 4.0467 -9.8028 1.1258 29 6 1.9317 -3.7275 -0.0049 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5998 -1.7588 0.6148 32 1 -0.5266 -2.4868 -1.0191 33 1 -0.3533 -3.8981 1.6995 34 1 -1.3593 -4.3327 0.2770 35 1 1.4865 -5.5615 1.8936 36 1 0.2260 -6.5364 1.1007 37 1 2.5066 -6.5066 -0.5647 38 1 5.1084 -7.4963 -0.8568 39 1 5.0636 -7.1298 0.8996 40 1 7.8995 -8.1950 -0.2743 41 1 9.1738 -10.2230 0.3076 42 1 8.0163 -12.1556 1.3011 43 1 2.5251 -3.8622 -0.9092 44 1 2.5611 -3.8531 0.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028995934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:13 Heat of formation + Delta-G solvation = -77.152835 kcal Electronic energy + Delta-G solvation = -27853.715373 eV Core-core repulsion = 23685.881647 eV Total energy + Delta-G solvation = -4167.833726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92203 -42.49710 -40.60994 -39.25337 -38.32902 -36.15014 -34.47249 -33.62582 -31.82280 -31.06355 -30.65967 -29.63293 -27.36262 -26.00613 -24.67947 -23.56968 -22.86046 -22.25509 -21.57369 -21.06354 -19.09206 -18.81208 -18.61295 -18.39767 -17.84637 -17.23408 -16.93752 -16.68727 -16.56493 -16.35015 -15.95501 -15.63479 -15.40969 -15.22505 -14.43109 -14.37767 -14.25356 -14.23306 -14.00842 -13.80077 -13.52605 -13.37941 -13.17340 -12.99970 -12.82311 -12.77423 -12.64050 -12.40589 -12.12570 -12.05018 -11.88520 -11.80752 -11.58859 -11.36631 -10.97935 -10.71544 -10.22273 -9.82498 -9.29844 -8.85816 -7.75886 -5.19723 0.05332 0.11059 1.34358 1.46789 1.47731 1.50494 1.56833 2.32397 2.50913 2.52111 3.06660 3.19971 3.33864 3.42256 3.63200 3.70562 3.81480 3.84105 3.90727 3.99401 4.08138 4.15052 4.22354 4.34894 4.45931 4.59242 4.64964 4.69072 4.71790 4.81136 4.91233 4.93095 5.05230 5.05691 5.14136 5.23575 5.27154 5.33643 5.41460 5.46647 5.49868 5.67731 5.84822 5.97975 6.33784 6.39944 7.05500 7.12822 7.81502 8.44578 9.25861 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002219 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.071846 B =12615.849517 C =13846.455475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.296 1.296 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.092 4.092 13 H 0.101 0.899 14 C 0.144 3.856 15 N -0.700 5.700 16 C 0.517 3.483 17 O -0.573 6.573 18 C 0.062 3.938 19 H 0.149 0.851 20 C -0.093 4.093 21 C -0.148 4.148 22 C -0.072 4.072 23 C -0.106 4.106 24 C -0.118 4.118 25 C 0.050 3.950 26 F -0.154 7.154 27 C 0.037 3.963 28 O -0.306 6.306 29 C 0.137 3.863 30 H 0.246 0.754 31 H 0.069 0.931 32 H -0.008 1.008 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.420 0.580 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.036 0.964 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.498 -21.410 -4.686 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.222 1.222 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.163 4.163 12 C -0.111 4.111 13 H 0.120 0.880 14 C 0.020 3.980 15 N -0.354 5.354 16 C 0.302 3.698 17 O -0.452 6.452 18 C 0.004 3.996 19 H 0.166 0.834 20 C -0.130 4.130 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.136 4.136 25 C 0.031 3.969 26 F -0.133 7.133 27 C -0.009 4.009 28 O -0.220 6.220 29 C 0.012 3.988 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.166 0.834 39 H 0.112 0.888 40 H 0.184 0.816 41 H 0.195 0.805 42 H 0.185 0.815 43 H 0.054 0.946 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 14.946 -21.555 -3.750 26.497 hybrid contribution -0.222 0.997 0.022 1.022 sum 14.724 -20.558 -3.728 25.561 Atomic orbital electron populations 1.70054 1.06210 1.25010 1.58707 1.25634 0.96624 1.01018 1.02927 0.85144 0.77114 0.78847 0.78193 1.22196 1.20484 1.20196 1.19421 0.91048 0.83842 1.42348 0.90030 1.44819 1.02765 1.01094 1.86833 1.21727 0.84211 0.94793 0.96653 1.22851 0.97911 0.95619 0.99951 1.22278 0.95734 0.93088 1.00031 0.88036 1.21254 0.90714 0.90551 0.95477 1.45722 1.40984 1.24883 1.23799 1.20429 0.82738 0.81439 0.85167 1.90749 1.60037 1.71634 1.22753 1.23438 0.95547 0.86215 0.94447 0.83373 1.21882 0.87576 0.96284 1.07278 1.20870 0.96257 0.93700 1.04048 1.20880 0.90594 0.99878 0.97666 1.21434 1.02045 0.91245 0.97688 1.21301 0.89808 1.02445 1.00073 1.17522 0.91916 0.82215 1.05290 1.91454 1.83085 1.54697 1.84073 1.19939 0.84518 0.95318 1.01103 1.86965 1.22157 1.50932 1.61975 1.21535 0.94678 0.84445 0.98133 0.94425 0.91309 0.99029 0.92153 0.89287 0.92804 0.90649 0.74223 0.83388 0.88773 0.81558 0.80468 0.81550 0.94619 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.00 10.09 21.65 0.22 -55.78 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 4 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.24 -12.95 10.27 84.03 0.86 -12.09 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.63 -31.02 3.39 -691.99 -2.35 -33.37 16 10 C 0.15 7.17 5.89 86.85 0.51 7.69 16 11 C -0.12 -4.27 6.53 31.98 0.21 -4.06 16 12 C -0.09 -2.63 2.94 -9.61 -0.03 -2.66 16 13 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 14 C 0.14 3.69 5.03 86.38 0.43 4.13 16 15 N -0.70 -14.41 5.46 -463.06 -2.53 -16.94 16 16 C 0.52 13.11 7.13 87.66 0.63 13.74 16 17 O -0.57 -20.96 16.57 15.17 0.25 -20.71 16 18 C 0.06 1.21 4.05 30.43 0.12 1.33 16 19 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 20 C -0.09 -1.28 6.63 30.73 0.20 -1.08 16 21 C -0.15 -2.40 6.27 -19.53 -0.12 -2.52 16 22 C -0.07 -0.74 10.03 22.19 0.22 -0.52 16 23 C -0.11 -0.92 10.07 22.30 0.22 -0.70 16 24 C -0.12 -1.57 9.99 22.25 0.22 -1.35 16 25 C 0.05 1.10 7.32 22.54 0.16 1.27 16 26 F -0.15 -4.06 17.26 44.97 0.78 -3.29 16 27 C 0.04 0.86 7.01 22.70 0.16 1.02 16 28 O -0.31 -8.65 10.39 -77.55 -0.81 -9.46 16 29 C 0.14 5.00 6.77 86.73 0.59 5.59 16 30 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 31 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.05 1.63 7.95 -2.38 -0.02 1.61 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.42 5.79 8.47 -92.71 -0.79 5.01 16 38 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 1.50 7.92 -2.39 -0.02 1.48 16 40 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 42 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.02 0.79 7.70 -2.39 -0.02 0.77 16 Total: -1.00 -80.25 368.73 2.70 -77.55 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.25 Total: 8.77 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.87 Total: 6.36 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.66 Total: -106.08 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.55 Total: -30.17 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.25 2.70 -77.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028995934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.399 kcal (2) G-P(sol) polarization free energy of solvation -80.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds