Wall clock time and date at job start Tue Mar 31 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47352 * 269.99695 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.46997 * 150.00314 * 3 2 1 7 7 C 1.38813 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.47574 * 134.49294 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11920 * 155.36049 * 10 9 7 12 12 C 1.52997 * 113.74563 * 137.95277 * 11 10 9 13 13 N 1.46505 * 109.47212 * 176.92618 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.69420 * 60.00679 * 16 14 13 18 18 C 1.53406 * 109.70060 * 299.44784 * 16 14 13 19 19 O 1.42815 * 108.37118 * 175.59216 * 18 16 14 20 20 C 1.35851 * 117.87683 * 49.15128 * 19 18 16 21 21 C 1.39107 * 118.46302 * 162.94376 * 20 19 18 22 22 C 1.38188 * 120.19205 * 179.78957 * 21 20 19 23 23 F 1.35105 * 120.04416 * 179.97438 * 22 21 20 24 24 C 1.38518 * 119.90606 * 359.97438 * 22 21 20 25 25 C 1.38067 * 119.95624 * 0.08404 * 24 22 21 26 26 C 1.38387 * 121.80792 * 342.85477 * 20 19 18 27 27 C 1.50782 * 121.40041 * 0.34464 * 26 20 19 28 28 C 1.47815 * 134.45371 * 359.86817 * 9 7 2 29 29 H 0.96999 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.77298 * 41.06274 * 10 9 7 31 31 H 1.09002 * 113.87696 * 269.67450 * 10 9 7 32 32 H 1.09005 * 113.74259 * 269.15696 * 11 10 9 33 33 H 1.09002 * 109.47153 * 56.92611 * 12 11 10 34 34 H 1.09001 * 109.46832 * 296.92801 * 12 11 10 35 35 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 36 36 H 1.09002 * 109.68689 * 295.27306 * 18 16 14 37 37 H 1.09007 * 109.68117 * 55.83178 * 18 16 14 38 38 H 1.07996 * 119.90466 * 359.77099 * 21 20 19 39 39 H 1.07995 * 120.02396 * 180.02562 * 24 22 21 40 40 H 1.08001 * 119.82105 * 179.97438 * 25 24 22 41 41 H 1.09002 * 109.43235 * 222.25644 * 27 26 20 42 42 H 1.08996 * 109.43423 * 102.39157 * 27 26 20 43 43 H 1.08999 * 113.76749 * 90.38282 * 28 9 7 44 44 H 1.08998 * 113.83625 * 318.92068 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3471 -4.0830 0.6398 12 6 -0.3635 -5.3137 0.0729 13 7 -1.6201 -5.5279 0.7949 14 6 -2.4192 -6.5616 0.4645 15 8 -2.0980 -7.3148 -0.4302 16 6 -3.7116 -6.7823 1.2076 17 1 -4.3543 -5.9093 1.0941 18 6 -3.4190 -7.0192 2.6948 19 8 -4.6637 -7.1218 3.3875 20 6 -5.6074 -7.9556 2.8780 21 6 -6.6593 -8.3474 3.6997 22 6 -7.6413 -9.1912 3.2167 23 9 -8.6613 -9.5703 4.0176 24 6 -7.5784 -9.6478 1.9105 25 6 -6.5343 -9.2607 1.0944 26 6 -5.5465 -8.4164 1.5745 27 6 -4.4205 -8.0204 0.6531 28 6 -0.1058 -2.7571 0.0024 29 1 -0.4850 0.8400 0.0004 30 1 2.5624 -4.0324 0.6547 31 1 1.8327 -4.2368 -0.9973 32 1 0.3594 -4.0639 1.7296 33 1 0.2763 -6.1885 0.1895 34 1 -0.5744 -5.1562 -0.9849 35 1 -1.8772 -4.9254 1.5102 36 1 -2.8551 -7.9441 2.8153 37 1 -2.8440 -6.1833 3.0935 38 1 -6.7084 -7.9914 4.7181 39 1 -8.3451 -10.3070 1.5310 40 1 -6.4872 -9.6183 0.0764 41 1 -4.8224 -7.7962 -0.3350 42 1 -3.7086 -8.8422 0.5764 43 1 -0.5319 -2.8718 -0.9943 44 1 -0.7183 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031670037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:24 Heat of formation + Delta-G solvation = -44.634120 kcal Electronic energy + Delta-G solvation = -27552.029507 eV Core-core repulsion = 23385.605899 eV Total energy + Delta-G solvation = -4166.423609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.24954 -41.32529 -39.65255 -38.08400 -37.68139 -34.62986 -34.44896 -32.25227 -30.97884 -30.82939 -28.82174 -26.22970 -25.97644 -24.87395 -24.41340 -23.30291 -22.08805 -21.22831 -20.12077 -19.06182 -18.72002 -17.72930 -17.19213 -16.78966 -16.42162 -16.04083 -16.01430 -15.65810 -15.40919 -15.25859 -14.94777 -14.84868 -14.26865 -14.10189 -13.95700 -13.69005 -13.49038 -13.35880 -13.20346 -12.90264 -12.39591 -12.07135 -11.92105 -11.59230 -11.47775 -11.38911 -11.26133 -11.05044 -11.03448 -10.75784 -10.64265 -10.10999 -9.83557 -9.78311 -9.49286 -9.15785 -8.97151 -8.84519 -8.60486 -6.93257 -5.81794 -3.14035 0.70982 0.86726 2.46269 2.68623 3.06840 3.18654 3.36079 3.41029 3.42877 3.97356 4.10568 4.21317 4.29373 4.41001 4.43098 4.61269 4.64445 4.76240 4.95926 5.01489 5.08030 5.11918 5.18135 5.22507 5.30369 5.52079 5.55951 5.58784 5.66165 5.71371 5.74960 5.78879 5.93923 5.99811 6.15864 6.27971 6.30384 6.44831 6.56081 6.66182 6.92819 7.15486 7.28540 7.46012 7.49844 7.93159 8.12699 8.99975 9.66171 10.54425 11.35446 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.001936 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.476158 B =14460.648114 C =15087.067575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.154 4.154 12 C 0.129 3.871 13 N -0.719 5.719 14 C 0.520 3.480 15 O -0.538 6.538 16 C -0.150 4.150 17 H 0.115 0.885 18 C 0.073 3.927 19 O -0.304 6.304 20 C 0.159 3.841 21 C -0.185 4.185 22 C 0.128 3.872 23 F -0.136 7.136 24 C -0.184 4.184 25 C -0.053 4.053 26 C -0.164 4.164 27 C -0.058 4.058 28 C 0.168 3.832 29 H 0.254 0.746 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.027 0.973 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -19.766 6.037 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.174 4.174 12 C 0.005 3.995 13 N -0.369 5.369 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.171 4.171 17 H 0.133 0.867 18 C -0.003 4.003 19 O -0.218 6.218 20 C 0.113 3.887 21 C -0.204 4.204 22 C 0.109 3.891 23 F -0.114 7.114 24 C -0.203 4.203 25 C -0.071 4.071 26 C -0.165 4.165 27 C -0.095 4.095 28 C 0.043 3.957 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.507 -19.820 5.594 24.628 hybrid contribution 0.197 1.227 0.114 1.248 sum -13.310 -18.593 5.708 23.568 Atomic orbital electron populations 1.69803 1.05025 1.25388 1.56740 1.24789 0.95706 0.97573 1.02458 0.86113 0.78634 0.83366 0.77611 1.21607 1.21600 1.20593 1.19033 0.90302 0.81984 1.43758 0.90230 1.45981 1.02434 0.99299 1.86163 1.22480 0.93949 0.86494 0.96887 1.23817 0.98292 0.94692 1.00570 1.21503 0.83400 0.98143 0.96437 1.46111 1.22557 1.29690 1.38578 1.20068 0.84614 0.81016 0.83837 1.90712 1.73875 1.45852 1.31088 1.22048 0.96861 1.01889 0.96348 0.86666 1.23018 0.83538 1.04036 0.89684 1.86044 1.24079 1.59910 1.51722 1.18306 0.89389 0.90310 0.90664 1.20414 0.95611 1.02805 1.01595 1.17246 0.85975 0.97035 0.88846 1.91518 1.57099 1.89639 1.73186 1.21025 1.01597 1.04937 0.92736 1.20763 0.91754 0.94812 0.99812 1.19954 0.99932 1.02880 0.93783 1.20308 0.94658 0.96752 0.97832 1.22354 0.88154 0.88423 0.96769 0.93628 0.93643 0.94662 0.89163 0.91771 0.91247 0.76259 0.90641 0.86381 0.83843 0.84485 0.84429 0.88962 0.88848 0.95520 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 11.39 55.49 0.63 -26.21 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -15.25 3.70 -177.70 -0.66 -15.91 16 10 C 0.13 2.48 8.51 -2.97 -0.03 2.45 16 11 C -0.15 -2.55 3.93 -89.70 -0.35 -2.90 16 12 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 13 N -0.72 -8.34 5.43 -60.29 -0.33 -8.67 16 14 C 0.52 6.16 7.16 -10.99 -0.08 6.08 16 15 O -0.54 -8.28 15.79 5.56 0.09 -8.19 16 16 C -0.15 -1.35 2.76 -91.53 -0.25 -1.60 16 17 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.07 0.58 6.26 37.37 0.23 0.81 16 19 O -0.30 -2.93 10.27 -19.27 -0.20 -3.13 16 20 C 0.16 1.54 6.47 -39.20 -0.25 1.28 16 21 C -0.18 -1.72 9.91 -39.28 -0.39 -2.11 16 22 C 0.13 1.17 7.30 -39.50 -0.29 0.88 16 23 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 24 C -0.18 -1.43 10.03 -39.54 -0.40 -1.82 16 25 C -0.05 -0.40 9.66 -39.54 -0.38 -0.79 16 26 C -0.16 -1.45 5.75 -104.42 -0.60 -2.06 16 27 C -0.06 -0.52 4.66 -27.81 -0.13 -0.65 16 28 C 0.17 3.70 7.08 -2.84 -0.02 3.68 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 35 H 0.40 3.91 7.91 -40.82 -0.32 3.58 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.74 7.53 -51.92 -0.39 0.35 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 43 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 44 H 0.07 1.75 7.17 -51.93 -0.37 1.38 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -32.82 369.27 -9.18 -41.99 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.08 Total: 0.62 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.21 Total: -1.63 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.35 Total: -50.79 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.11 Total: -11.32 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.82 -9.18 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031670037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.642 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds