Wall clock time and date at job start Tue Mar 31 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47352 * 269.99695 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00241 * 3 2 1 6 6 H 1.48505 * 109.46997 * 150.00314 * 3 2 1 7 7 C 1.38813 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.47574 * 134.49294 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11920 * 155.36049 * 10 9 7 12 12 C 1.52997 * 113.74563 * 137.95277 * 11 10 9 13 13 N 1.46505 * 109.47212 * 176.92618 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.69420 * 60.00679 * 16 14 13 18 18 C 1.53406 * 109.70060 * 299.44784 * 16 14 13 19 19 O 1.42815 * 108.37118 * 175.59216 * 18 16 14 20 20 C 1.35851 * 117.87683 * 49.15128 * 19 18 16 21 21 C 1.39107 * 118.46302 * 162.94376 * 20 19 18 22 22 C 1.38188 * 120.19205 * 179.78957 * 21 20 19 23 23 F 1.35105 * 120.04416 * 179.97438 * 22 21 20 24 24 C 1.38518 * 119.90606 * 359.97438 * 22 21 20 25 25 C 1.38067 * 119.95624 * 0.08404 * 24 22 21 26 26 C 1.38387 * 121.80792 * 342.85477 * 20 19 18 27 27 C 1.50782 * 121.40041 * 0.34464 * 26 20 19 28 28 C 1.47815 * 134.45371 * 359.86817 * 9 7 2 29 29 H 0.96999 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.77298 * 41.06274 * 10 9 7 31 31 H 1.09002 * 113.87696 * 269.67450 * 10 9 7 32 32 H 1.09005 * 113.74259 * 269.15696 * 11 10 9 33 33 H 1.09002 * 109.47153 * 56.92611 * 12 11 10 34 34 H 1.09001 * 109.46832 * 296.92801 * 12 11 10 35 35 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 36 36 H 1.09002 * 109.68689 * 295.27306 * 18 16 14 37 37 H 1.09007 * 109.68117 * 55.83178 * 18 16 14 38 38 H 1.07996 * 119.90466 * 359.77099 * 21 20 19 39 39 H 1.07995 * 120.02396 * 180.02562 * 24 22 21 40 40 H 1.08001 * 119.82105 * 179.97438 * 25 24 22 41 41 H 1.09002 * 109.43235 * 222.25644 * 27 26 20 42 42 H 1.08996 * 109.43423 * 102.39157 * 27 26 20 43 43 H 1.08999 * 113.76749 * 90.38282 * 28 9 7 44 44 H 1.08998 * 113.83625 * 318.92068 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3471 -4.0830 0.6398 12 6 -0.3635 -5.3137 0.0729 13 7 -1.6201 -5.5279 0.7949 14 6 -2.4192 -6.5616 0.4645 15 8 -2.0980 -7.3148 -0.4302 16 6 -3.7116 -6.7823 1.2076 17 1 -4.3543 -5.9093 1.0941 18 6 -3.4190 -7.0192 2.6948 19 8 -4.6637 -7.1218 3.3875 20 6 -5.6074 -7.9556 2.8780 21 6 -6.6593 -8.3474 3.6997 22 6 -7.6413 -9.1912 3.2167 23 9 -8.6613 -9.5703 4.0176 24 6 -7.5784 -9.6478 1.9105 25 6 -6.5343 -9.2607 1.0944 26 6 -5.5465 -8.4164 1.5745 27 6 -4.4205 -8.0204 0.6531 28 6 -0.1058 -2.7571 0.0024 29 1 -0.4850 0.8400 0.0004 30 1 2.5624 -4.0324 0.6547 31 1 1.8327 -4.2368 -0.9973 32 1 0.3594 -4.0639 1.7296 33 1 0.2763 -6.1885 0.1895 34 1 -0.5744 -5.1562 -0.9849 35 1 -1.8772 -4.9254 1.5102 36 1 -2.8551 -7.9441 2.8153 37 1 -2.8440 -6.1833 3.0935 38 1 -6.7084 -7.9914 4.7181 39 1 -8.3451 -10.3070 1.5310 40 1 -6.4872 -9.6183 0.0764 41 1 -4.8224 -7.7962 -0.3350 42 1 -3.7086 -8.8422 0.5764 43 1 -0.5319 -2.8718 -0.9943 44 1 -0.7183 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031670037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:24 Heat of formation + Delta-G solvation = -65.019951 kcal Electronic energy + Delta-G solvation = -27552.913503 eV Core-core repulsion = 23385.605899 eV Total energy + Delta-G solvation = -4167.307605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95475 -42.05230 -40.66260 -39.60807 -38.35553 -35.80682 -35.23669 -34.16845 -31.76877 -31.49288 -30.36484 -27.71320 -26.69475 -26.53153 -25.36765 -24.01613 -23.61595 -22.09790 -21.15378 -20.38173 -19.39662 -18.78422 -18.52620 -17.94974 -17.15744 -17.10094 -16.95851 -16.73787 -16.42398 -16.17435 -16.01358 -15.81554 -15.59343 -15.16082 -15.09219 -14.65767 -14.48435 -14.32866 -14.17535 -13.99937 -13.77282 -13.29408 -13.08719 -12.88356 -12.73268 -12.60400 -12.49428 -12.28949 -12.23031 -11.90275 -11.84393 -11.70815 -11.54890 -11.27235 -10.90884 -10.83018 -10.06614 -9.80711 -9.27067 -8.91247 -7.91100 -5.23739 0.04550 0.22888 1.45684 1.47123 1.52820 1.55745 1.98331 2.17208 2.47425 2.51432 3.29996 3.32507 3.39394 3.40885 3.50178 3.59011 3.76793 3.77565 3.93331 4.02430 4.08393 4.14900 4.30245 4.38050 4.42270 4.46581 4.51256 4.62887 4.80228 4.86629 4.88454 4.90559 4.92041 5.02676 5.03083 5.11959 5.16723 5.26657 5.35769 5.41471 5.56059 5.67140 5.67383 5.95073 6.26480 6.52079 6.92899 7.18150 7.61158 8.56673 9.25760 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.001936 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.476158 B =14460.648114 C =15087.067575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.647 5.647 10 C 0.125 3.875 11 C -0.113 4.113 12 C 0.141 3.859 13 N -0.713 5.713 14 C 0.525 3.475 15 O -0.573 6.573 16 C -0.141 4.141 17 H 0.123 0.877 18 C 0.072 3.928 19 O -0.313 6.313 20 C 0.144 3.856 21 C -0.195 4.195 22 C 0.116 3.884 23 F -0.142 7.142 24 C -0.180 4.180 25 C -0.052 4.052 26 C -0.168 4.168 27 C -0.055 4.055 28 C 0.164 3.836 29 H 0.248 0.752 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.011 0.989 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 -20.891 6.413 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.362 4.362 8 H 0.101 0.899 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.133 4.133 12 C 0.017 3.983 13 N -0.364 5.364 14 C 0.312 3.688 15 O -0.452 6.452 16 C -0.162 4.162 17 H 0.141 0.859 18 C -0.003 4.003 19 O -0.227 6.227 20 C 0.099 3.901 21 C -0.214 4.214 22 C 0.096 3.904 23 F -0.121 7.121 24 C -0.199 4.199 25 C -0.070 4.070 26 C -0.169 4.169 27 C -0.092 4.092 28 C 0.039 3.961 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.029 0.971 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.284 -20.972 5.992 25.538 hybrid contribution 0.135 1.509 -0.036 1.516 sum -13.148 -19.463 5.955 24.231 Atomic orbital electron populations 1.69983 1.06342 1.25575 1.58337 1.25612 0.96611 1.00822 1.03143 0.85097 0.77806 0.79214 0.77341 1.21659 1.21987 1.19190 1.19431 0.90860 0.83501 1.42445 0.89948 1.46426 1.03930 1.00718 1.86248 1.22703 0.95906 0.83441 0.97989 1.23397 0.96095 0.92878 1.00937 1.21207 0.84432 0.97177 0.95499 1.46001 1.21854 1.29986 1.38592 1.20431 0.85019 0.80139 0.83246 1.90702 1.74772 1.47062 1.32701 1.21984 0.95213 1.02345 0.96702 0.85883 1.23146 0.83223 1.05090 0.88802 1.86034 1.24524 1.60042 1.52096 1.18445 0.89683 0.90868 0.91123 1.20530 0.95836 1.03122 1.01939 1.17441 0.85970 0.97500 0.89463 1.91500 1.57352 1.89743 1.73474 1.21290 1.01964 1.04600 0.92065 1.21051 0.91045 0.94045 1.00828 1.20031 1.00240 1.03199 0.93478 1.20269 0.94564 0.96443 0.97967 1.22285 0.86855 0.91063 0.95880 0.94293 0.91994 0.93615 0.87521 0.90242 0.92880 0.74945 0.90205 0.84556 0.83559 0.82428 0.82128 0.88756 0.89411 0.97140 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 11.39 21.65 0.25 -56.38 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.23 -12.94 10.70 84.03 0.90 -12.04 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.65 -32.09 3.70 -716.13 -2.65 -34.74 16 10 C 0.12 4.61 8.51 86.49 0.74 5.34 16 11 C -0.11 -3.57 3.93 -10.14 -0.04 -3.61 16 12 C 0.14 3.69 5.51 86.38 0.48 4.17 16 13 N -0.71 -15.20 5.43 -463.06 -2.52 -17.72 16 14 C 0.53 11.60 7.16 87.66 0.63 12.23 16 15 O -0.57 -16.92 15.79 -3.03 -0.05 -16.97 16 16 C -0.14 -2.30 2.76 -11.38 -0.03 -2.34 16 17 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.07 1.02 6.26 72.12 0.45 1.47 16 19 O -0.31 -5.65 10.27 -91.87 -0.94 -6.59 16 20 C 0.14 2.64 6.47 22.51 0.15 2.79 16 21 C -0.19 -3.51 9.91 22.47 0.22 -3.29 16 22 C 0.12 1.99 7.30 22.32 0.16 2.16 16 23 F -0.14 -2.65 17.27 44.97 0.78 -1.87 16 24 C -0.18 -2.47 10.03 22.30 0.22 -2.25 16 25 C -0.05 -0.68 9.66 22.30 0.22 -0.47 16 26 C -0.17 -2.73 5.75 -19.73 -0.11 -2.85 16 27 C -0.06 -0.90 4.66 29.90 0.14 -0.76 16 28 C 0.16 7.29 7.08 86.44 0.61 7.90 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 35 H 0.41 7.13 7.91 -92.71 -0.73 6.40 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.14 1.38 7.53 -2.38 -0.02 1.36 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.55 7.70 -2.39 -0.02 1.53 16 43 H 0.01 0.51 7.92 -2.39 -0.02 0.49 16 44 H 0.04 2.22 7.17 -2.39 -0.02 2.21 16 Total: -1.00 -71.23 369.27 2.38 -68.85 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.30 Total: 13.13 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.19 Total: 5.03 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.92 Total: -108.84 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.99 Total: -23.56 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.23 2.38 -68.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031670037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.828 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds