Wall clock time and date at job start Tue Mar 31 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48492 * 109.47244 * 274.99106 * 3 2 1 5 5 H 1.48507 * 109.46906 * 34.98769 * 3 2 1 6 6 H 1.48502 * 109.47135 * 154.98543 * 3 2 1 7 7 C 1.38811 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99909 * 185.06206 * 7 2 1 9 9 N 1.36938 * 120.00048 * 5.06669 * 7 2 1 10 10 C 1.47579 * 134.49084 * 173.48362 * 9 7 2 11 11 C 1.53935 * 86.11669 * 155.35529 * 10 9 7 12 12 C 1.53005 * 113.74498 * 137.95333 * 11 10 9 13 13 N 1.46497 * 109.47240 * 176.92376 * 12 11 10 14 14 C 1.34780 * 120.00038 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99693 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00125 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.73109 * 60.58011 * 16 14 13 18 18 C 1.53405 * 109.69992 * 299.99925 * 16 14 13 19 19 O 1.42830 * 108.37584 * 175.58424 * 18 16 14 20 20 C 1.35898 * 117.86087 * 49.18709 * 19 18 16 21 21 C 1.39126 * 118.47245 * 162.79931 * 20 19 18 22 22 C 1.37971 * 120.25411 * 179.81203 * 21 20 19 23 23 C 1.38474 * 119.92846 * 359.97438 * 22 21 20 24 24 F 1.35098 * 120.03723 * 180.10293 * 23 22 21 25 25 C 1.38287 * 119.93088 * 0.08657 * 23 22 21 26 26 C 1.38351 * 121.79227 * 342.75656 * 20 19 18 27 27 C 1.50775 * 121.40944 * 0.53287 * 26 20 19 28 28 C 1.47809 * 134.45678 * 353.34482 * 9 7 2 29 29 H 0.96989 * 120.00428 * 0.02562 * 1 2 3 30 30 H 1.08998 * 113.76985 * 41.04720 * 10 9 7 31 31 H 1.09006 * 113.86760 * 269.67030 * 10 9 7 32 32 H 1.09000 * 113.74355 * 269.15288 * 11 10 9 33 33 H 1.08995 * 109.46857 * 56.91957 * 12 11 10 34 34 H 1.09004 * 109.46626 * 296.92465 * 12 11 10 35 35 H 0.97002 * 120.00113 * 359.97438 * 13 12 11 36 36 H 1.09009 * 109.68617 * 295.30492 * 18 16 14 37 37 H 1.09006 * 109.68263 * 55.82425 * 18 16 14 38 38 H 1.08007 * 119.87351 * 359.83796 * 21 20 19 39 39 H 1.07992 * 120.03753 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.85824 * 180.02562 * 25 23 22 41 41 H 1.09002 * 109.43511 * 222.07632 * 27 26 20 42 42 H 1.08991 * 109.43849 * 102.20275 * 27 26 20 43 43 H 1.08996 * 113.76770 * 90.38281 * 28 9 7 44 44 H 1.08998 * 113.83441 * 318.91486 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0831 9 7 1.3297 -2.3858 -0.1037 10 6 1.7289 -3.7985 -0.2550 11 6 0.3713 -4.1417 0.3844 12 6 -0.3476 -5.3132 -0.2876 13 7 -1.5872 -5.6057 0.4365 14 6 -2.3902 -6.6055 0.0215 15 8 -2.0863 -7.2633 -0.9511 16 6 -3.6649 -6.9067 0.7666 17 1 -4.3176 -6.0339 0.7470 18 6 -3.3396 -7.2764 2.2195 19 8 -4.5688 -7.4548 2.9247 20 6 -5.5160 -8.2485 2.3593 21 6 -6.5458 -8.7275 3.1627 22 6 -7.5290 -9.5330 2.6260 23 6 -7.4921 -9.8662 1.2824 24 9 -8.4548 -10.6531 0.7541 25 6 -6.4688 -9.3925 0.4819 26 6 -5.4787 -8.5854 1.0179 27 6 -4.3744 -8.0965 0.1153 28 6 -0.1000 -2.7610 -0.1072 29 1 -0.4850 0.8399 -0.0004 30 1 2.5862 -4.0806 0.3561 31 1 1.8206 -4.1223 -1.2918 32 1 0.4078 -4.2319 1.4701 33 1 0.2974 -6.1917 -0.2733 34 1 -0.5826 -5.0517 -1.3193 35 1 -1.8300 -5.0798 1.2145 36 1 -2.7652 -8.2026 2.2429 37 1 -2.7632 -6.4752 2.6820 38 1 -6.5760 -8.4675 4.2106 39 1 -8.3266 -9.9032 3.2529 40 1 -6.4413 -9.6527 -0.5659 41 1 -4.7973 -7.7875 -0.8406 42 1 -3.6574 -8.9007 -0.0490 43 1 -0.5473 -2.7777 -1.1009 44 1 -0.7001 -2.2165 0.6218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031845981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:37 Heat of formation + Delta-G solvation = -44.913500 kcal Electronic energy + Delta-G solvation = -27558.705028 eV Core-core repulsion = 23392.269304 eV Total energy + Delta-G solvation = -4166.435724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.13482 -41.31322 -39.65348 -38.08569 -37.63439 -34.67573 -34.49038 -32.27731 -31.33074 -30.29423 -28.87343 -26.38720 -25.91157 -24.88144 -24.47457 -23.19433 -22.11257 -21.24692 -20.12334 -19.06827 -18.33636 -17.85381 -17.41749 -16.92637 -16.70240 -15.98585 -15.92119 -15.67804 -15.32769 -15.00117 -14.83697 -14.70748 -14.20219 -14.04648 -13.82256 -13.64497 -13.53250 -13.37257 -13.19366 -12.96166 -12.79077 -12.38090 -11.66135 -11.54665 -11.46350 -11.38695 -11.21862 -11.04710 -11.01328 -10.78047 -10.62567 -10.10743 -9.85073 -9.78229 -9.49108 -9.35126 -8.97474 -8.83967 -8.44663 -6.92282 -5.83645 -3.14875 0.73674 0.81773 2.46731 2.77737 3.06170 3.19828 3.35885 3.41249 3.43071 3.88767 4.11564 4.19148 4.25418 4.40845 4.41065 4.57030 4.70362 4.80110 4.93033 5.05181 5.08022 5.12032 5.22419 5.23304 5.29732 5.44015 5.53398 5.58568 5.67232 5.73213 5.74689 5.77377 5.90575 5.95208 6.16130 6.27972 6.30814 6.44843 6.56986 6.66069 6.95813 7.15003 7.26957 7.45851 7.50098 7.92377 8.12586 8.99369 9.65531 10.54683 11.34222 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.001915 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.167480 B =14617.367924 C =15019.063510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.154 4.154 12 C 0.129 3.871 13 N -0.718 5.718 14 C 0.520 3.480 15 O -0.538 6.538 16 C -0.149 4.149 17 H 0.116 0.884 18 C 0.072 3.928 19 O -0.305 6.305 20 C 0.120 3.880 21 C -0.118 4.118 22 C -0.123 4.123 23 C 0.066 3.934 24 F -0.141 7.141 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.061 4.061 28 C 0.171 3.829 29 H 0.254 0.746 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.029 0.971 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -20.003 6.259 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.001 3.999 11 C -0.174 4.174 12 C 0.005 3.995 13 N -0.369 5.369 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.171 4.171 17 H 0.134 0.866 18 C -0.003 4.003 19 O -0.219 6.219 20 C 0.075 3.925 21 C -0.136 4.136 22 C -0.141 4.141 23 C 0.047 3.953 24 F -0.120 7.120 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.098 4.098 28 C 0.046 3.954 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.361 -20.024 5.736 24.747 hybrid contribution 0.209 1.137 -0.153 1.166 sum -13.152 -18.887 5.584 23.683 Atomic orbital electron populations 1.69818 1.05074 1.25446 1.56359 1.24828 0.95700 0.97587 1.02300 0.86127 0.78759 0.83517 0.77554 1.21600 1.21675 1.20518 1.19033 0.90802 0.82065 1.43306 0.90181 1.45966 1.02419 1.00703 1.84795 1.22485 0.93999 0.86402 0.96963 1.23835 0.98354 0.95104 1.00139 1.21503 0.83831 0.97933 0.96221 1.46106 1.23583 1.34402 1.32832 1.20066 0.84367 0.80376 0.84736 1.90718 1.73783 1.49885 1.27132 1.22038 0.97003 1.01568 0.96457 0.86623 1.22997 0.84149 1.03202 0.89999 1.86065 1.24850 1.63729 1.47231 1.18730 0.90608 0.92476 0.90702 1.20446 0.93971 0.98808 1.00391 1.20922 1.00072 0.99529 0.93614 1.17495 0.89049 0.96375 0.92408 1.91496 1.61586 1.72101 1.86821 1.20879 0.93440 0.98503 1.00745 1.19705 0.98624 1.01233 0.93116 1.20341 0.94939 0.96997 0.97522 1.22292 0.88049 0.87277 0.97779 0.93604 0.93676 0.94660 0.89178 0.91770 0.91230 0.76270 0.90746 0.86461 0.84006 0.84093 0.84284 0.88827 0.88653 0.95328 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 11.51 55.49 0.64 -26.17 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.25 3.70 -177.74 -0.66 -15.90 16 10 C 0.13 2.47 8.51 -2.97 -0.03 2.44 16 11 C -0.15 -2.55 3.93 -89.70 -0.35 -2.90 16 12 C 0.13 1.81 5.51 -4.04 -0.02 1.79 16 13 N -0.72 -8.34 5.43 -60.29 -0.33 -8.67 16 14 C 0.52 6.19 7.16 -10.99 -0.08 6.12 16 15 O -0.54 -8.36 15.80 5.55 0.09 -8.27 16 16 C -0.15 -1.34 2.76 -91.53 -0.25 -1.60 16 17 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 18 C 0.07 0.57 6.25 37.37 0.23 0.80 16 19 O -0.31 -2.83 10.27 -19.42 -0.20 -3.03 16 20 C 0.12 1.11 6.47 -39.21 -0.25 0.86 16 21 C -0.12 -0.94 9.93 -39.35 -0.39 -1.33 16 22 C -0.12 -0.94 10.02 -39.59 -0.40 -1.34 16 23 C 0.07 0.60 7.30 -39.48 -0.29 0.31 16 24 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 25 C -0.12 -1.03 9.64 -39.46 -0.38 -1.41 16 26 C -0.13 -1.15 5.75 -104.44 -0.60 -1.75 16 27 C -0.06 -0.56 4.65 -27.81 -0.13 -0.69 16 28 C 0.17 3.77 6.99 -2.84 -0.02 3.75 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 35 H 0.40 3.87 7.87 -40.82 -0.32 3.55 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.12 0.72 7.50 -51.93 -0.39 0.33 16 38 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.93 7.71 -51.93 -0.40 0.53 16 43 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 44 H 0.07 1.64 7.37 -51.93 -0.38 1.26 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -32.94 369.45 -9.18 -42.11 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.09 Total: 0.51 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.21 Total: -1.62 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.35 Total: -50.74 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.11 Total: -11.30 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.94 -9.18 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031845981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.799 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds