Wall clock time and date at job start Tue Mar 31 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48492 * 109.47244 * 274.99106 * 3 2 1 5 5 H 1.48507 * 109.46906 * 34.98769 * 3 2 1 6 6 H 1.48502 * 109.47135 * 154.98543 * 3 2 1 7 7 C 1.38811 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99909 * 185.06206 * 7 2 1 9 9 N 1.36938 * 120.00048 * 5.06669 * 7 2 1 10 10 C 1.47579 * 134.49084 * 173.48362 * 9 7 2 11 11 C 1.53935 * 86.11669 * 155.35529 * 10 9 7 12 12 C 1.53005 * 113.74498 * 137.95333 * 11 10 9 13 13 N 1.46497 * 109.47240 * 176.92376 * 12 11 10 14 14 C 1.34780 * 120.00038 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99693 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00125 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.73109 * 60.58011 * 16 14 13 18 18 C 1.53405 * 109.69992 * 299.99925 * 16 14 13 19 19 O 1.42830 * 108.37584 * 175.58424 * 18 16 14 20 20 C 1.35898 * 117.86087 * 49.18709 * 19 18 16 21 21 C 1.39126 * 118.47245 * 162.79931 * 20 19 18 22 22 C 1.37971 * 120.25411 * 179.81203 * 21 20 19 23 23 C 1.38474 * 119.92846 * 359.97438 * 22 21 20 24 24 F 1.35098 * 120.03723 * 180.10293 * 23 22 21 25 25 C 1.38287 * 119.93088 * 0.08657 * 23 22 21 26 26 C 1.38351 * 121.79227 * 342.75656 * 20 19 18 27 27 C 1.50775 * 121.40944 * 0.53287 * 26 20 19 28 28 C 1.47809 * 134.45678 * 353.34482 * 9 7 2 29 29 H 0.96989 * 120.00428 * 0.02562 * 1 2 3 30 30 H 1.08998 * 113.76985 * 41.04720 * 10 9 7 31 31 H 1.09006 * 113.86760 * 269.67030 * 10 9 7 32 32 H 1.09000 * 113.74355 * 269.15288 * 11 10 9 33 33 H 1.08995 * 109.46857 * 56.91957 * 12 11 10 34 34 H 1.09004 * 109.46626 * 296.92465 * 12 11 10 35 35 H 0.97002 * 120.00113 * 359.97438 * 13 12 11 36 36 H 1.09009 * 109.68617 * 295.30492 * 18 16 14 37 37 H 1.09006 * 109.68263 * 55.82425 * 18 16 14 38 38 H 1.08007 * 119.87351 * 359.83796 * 21 20 19 39 39 H 1.07992 * 120.03753 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.85824 * 180.02562 * 25 23 22 41 41 H 1.09002 * 109.43511 * 222.07632 * 27 26 20 42 42 H 1.08991 * 109.43849 * 102.20275 * 27 26 20 43 43 H 1.08996 * 113.76770 * 90.38281 * 28 9 7 44 44 H 1.08998 * 113.83441 * 318.91486 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0831 9 7 1.3297 -2.3858 -0.1037 10 6 1.7289 -3.7985 -0.2550 11 6 0.3713 -4.1417 0.3844 12 6 -0.3476 -5.3132 -0.2876 13 7 -1.5872 -5.6057 0.4365 14 6 -2.3902 -6.6055 0.0215 15 8 -2.0863 -7.2633 -0.9511 16 6 -3.6649 -6.9067 0.7666 17 1 -4.3176 -6.0339 0.7470 18 6 -3.3396 -7.2764 2.2195 19 8 -4.5688 -7.4548 2.9247 20 6 -5.5160 -8.2485 2.3593 21 6 -6.5458 -8.7275 3.1627 22 6 -7.5290 -9.5330 2.6260 23 6 -7.4921 -9.8662 1.2824 24 9 -8.4548 -10.6531 0.7541 25 6 -6.4688 -9.3925 0.4819 26 6 -5.4787 -8.5854 1.0179 27 6 -4.3744 -8.0965 0.1153 28 6 -0.1000 -2.7610 -0.1072 29 1 -0.4850 0.8399 -0.0004 30 1 2.5862 -4.0806 0.3561 31 1 1.8206 -4.1223 -1.2918 32 1 0.4078 -4.2319 1.4701 33 1 0.2974 -6.1917 -0.2733 34 1 -0.5826 -5.0517 -1.3193 35 1 -1.8300 -5.0798 1.2145 36 1 -2.7652 -8.2026 2.2429 37 1 -2.7632 -6.4752 2.6820 38 1 -6.5760 -8.4675 4.2106 39 1 -8.3266 -9.9032 3.2529 40 1 -6.4413 -9.6527 -0.5659 41 1 -4.7973 -7.7875 -0.8406 42 1 -3.6574 -8.9007 -0.0490 43 1 -0.5473 -2.7777 -1.1009 44 1 -0.7001 -2.2165 0.6218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031845981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:36 Heat of formation + Delta-G solvation = -65.437624 kcal Electronic energy + Delta-G solvation = -27559.595020 eV Core-core repulsion = 23392.269304 eV Total energy + Delta-G solvation = -4167.325716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.84443 -42.04068 -40.66561 -39.61318 -38.30701 -35.82232 -35.31247 -34.18444 -32.11359 -30.94620 -30.43727 -27.78798 -26.73351 -26.53369 -25.43804 -23.85492 -23.68135 -22.13244 -21.16891 -20.39224 -18.98886 -18.78368 -18.62323 -18.12128 -17.67811 -17.06696 -16.97033 -16.63390 -16.48815 -16.08838 -15.85428 -15.61875 -15.44999 -15.15701 -14.97740 -14.50550 -14.43326 -14.26907 -14.23810 -13.96955 -13.78214 -13.58108 -13.30971 -13.09208 -12.88921 -12.54400 -12.35610 -12.22051 -12.15053 -11.87398 -11.81629 -11.72187 -11.56090 -11.27490 -10.89021 -10.85403 -10.08154 -9.97819 -9.11870 -8.90468 -7.93045 -5.24610 0.10449 0.15559 1.45206 1.46994 1.51882 1.55638 2.02921 2.22431 2.47086 2.52856 3.20711 3.28013 3.37754 3.42103 3.50931 3.58482 3.74655 3.76010 3.87680 4.06719 4.08631 4.14980 4.31107 4.37818 4.42678 4.47899 4.59304 4.62819 4.80023 4.82470 4.85332 4.88778 4.90045 4.97816 5.09885 5.11800 5.14605 5.25293 5.26404 5.40308 5.55593 5.66308 5.67443 5.94104 6.30358 6.51364 6.92287 7.17461 7.60463 8.56734 9.24651 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.001915 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.167480 B =14617.367924 C =15019.063510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.647 5.647 10 C 0.124 3.876 11 C -0.113 4.113 12 C 0.141 3.859 13 N -0.712 5.712 14 C 0.525 3.475 15 O -0.575 6.575 16 C -0.139 4.139 17 H 0.124 0.876 18 C 0.072 3.928 19 O -0.310 6.310 20 C 0.108 3.892 21 C -0.118 4.118 22 C -0.117 4.117 23 C 0.050 3.950 24 F -0.149 7.149 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.058 4.058 28 C 0.168 3.832 29 H 0.248 0.752 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.011 0.989 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 -20.883 7.664 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.373 5.373 10 C -0.001 4.001 11 C -0.133 4.133 12 C 0.016 3.984 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.454 6.454 16 C -0.161 4.161 17 H 0.142 0.858 18 C -0.003 4.003 19 O -0.224 6.224 20 C 0.063 3.937 21 C -0.137 4.137 22 C -0.135 4.135 23 C 0.031 3.969 24 F -0.127 7.127 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.095 4.095 28 C 0.042 3.958 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.251 0.749 36 H 0.097 0.903 37 H 0.156 0.844 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.028 0.972 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.130 -20.931 7.162 25.725 hybrid contribution 0.143 1.346 -0.610 1.485 sum -12.986 -19.585 6.552 24.395 Atomic orbital electron populations 1.69990 1.06394 1.25635 1.58048 1.25642 0.96596 1.00842 1.03022 0.85106 0.78045 0.79360 0.77138 1.21817 1.22013 1.19026 1.19428 0.91321 0.83553 1.42003 0.89876 1.46407 1.03919 1.02020 1.84975 1.22705 0.96022 0.83355 0.98006 1.23416 0.96060 0.92853 1.00955 1.21207 0.84835 0.97192 0.95121 1.45982 1.22854 1.34518 1.32962 1.20445 0.84761 0.79522 0.84165 1.90708 1.74723 1.51165 1.28838 1.21966 0.95356 1.01824 0.96936 0.85766 1.23123 0.83961 1.04193 0.89017 1.86064 1.25165 1.63761 1.47380 1.18962 0.91103 0.92764 0.90904 1.20709 0.93389 0.98330 1.01243 1.21190 1.00377 0.98728 0.93233 1.17710 0.89150 0.96842 0.93173 1.91476 1.61866 1.72382 1.87023 1.21006 0.93444 0.98462 1.01273 1.19686 0.98721 1.01741 0.93259 1.20277 0.94884 0.96823 0.97547 1.22221 0.86784 0.90390 0.96366 0.94260 0.91923 0.93769 0.87308 0.90253 0.93010 0.74856 0.90327 0.84444 0.82102 0.81827 0.83628 0.89185 0.89430 0.97163 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 11.51 21.65 0.25 -56.36 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.98 45.21 29.56 68.60 2.03 47.23 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.65 -32.06 3.70 -716.26 -2.65 -34.72 16 10 C 0.12 4.59 8.51 86.48 0.74 5.33 16 11 C -0.11 -3.55 3.93 -10.14 -0.04 -3.59 16 12 C 0.14 3.71 5.51 86.38 0.48 4.18 16 13 N -0.71 -15.20 5.43 -463.05 -2.52 -17.72 16 14 C 0.52 11.81 7.16 87.65 0.63 12.43 16 15 O -0.57 -17.46 15.80 -3.06 -0.05 -17.51 16 16 C -0.14 -2.32 2.76 -11.38 -0.03 -2.35 16 17 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.07 0.98 6.25 72.12 0.45 1.43 16 19 O -0.31 -5.10 10.27 -92.40 -0.95 -6.05 16 20 C 0.11 1.83 6.47 22.51 0.15 1.98 16 21 C -0.12 -1.64 9.93 22.42 0.22 -1.42 16 22 C -0.12 -1.58 10.02 22.26 0.22 -1.36 16 23 C 0.05 0.86 7.30 22.34 0.16 1.03 16 24 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 25 C -0.12 -2.10 9.64 22.35 0.22 -1.88 16 26 C -0.13 -2.31 5.75 -19.75 -0.11 -2.43 16 27 C -0.06 -1.03 4.65 29.90 0.14 -0.89 16 28 C 0.17 7.43 6.99 86.44 0.60 8.04 16 29 H 0.25 14.38 8.31 -92.72 -0.77 13.60 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.58 8.10 -2.38 -0.02 1.57 16 32 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.59 7.88 -2.38 -0.02 1.57 16 35 H 0.41 7.01 7.87 -92.71 -0.73 6.28 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.14 1.28 7.50 -2.38 -0.02 1.26 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.68 7.71 -2.39 -0.02 1.66 16 43 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 44 H 0.04 2.05 7.37 -2.39 -0.02 2.03 16 Total: -1.00 -71.60 369.45 2.37 -69.22 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.30 Total: 12.86 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.18 Total: 5.07 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.92 Total: -108.79 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.00 Total: -23.56 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.60 2.37 -69.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031845981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.784 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds