Wall clock time and date at job start Tue Mar 31 2020 18:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99859 * 2 1 4 4 H 1.48495 * 109.46820 * 270.00203 * 3 2 1 5 5 H 1.48502 * 109.47000 * 29.99960 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99999 * 3 2 1 7 7 C 1.38809 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00494 * 195.66649 * 7 2 1 9 9 N 1.36944 * 119.99830 * 15.67161 * 7 2 1 10 10 C 1.44577 * 118.64673 * 206.52154 * 9 7 2 11 11 C 1.54862 * 109.60201 * 270.70659 * 10 9 7 12 12 C 1.47088 * 110.31786 * 288.72852 * 11 10 9 13 13 C 1.52729 * 114.22796 * 62.83977 * 12 11 10 14 14 C 1.50889 * 109.27228 * 274.82700 * 13 12 11 15 15 H 1.09001 * 109.36196 * 331.92551 * 14 13 12 16 16 N 1.46492 * 109.36778 * 212.17903 * 14 13 12 17 17 C 1.34781 * 120.00105 * 154.74493 * 16 14 13 18 18 O 1.21701 * 119.99623 * 359.97438 * 17 16 14 19 19 C 1.46583 * 119.99901 * 180.27737 * 17 16 14 20 20 C 1.35875 * 125.41224 * 179.72343 * 19 17 16 21 21 C 1.39174 * 113.99573 * 179.97438 * 20 19 17 22 22 C 1.34363 * 113.99837 * 359.97438 * 21 20 19 23 23 S 1.71483 * 111.07970 * 359.78050 * 22 21 20 24 24 C 1.52365 * 110.38671 * 180.02562 * 22 21 20 25 25 C 1.54164 * 104.90247 * 17.54298 * 24 22 21 26 26 C 1.52814 * 136.18924 * 179.97438 * 21 20 19 27 27 C 1.47609 * 118.64015 * 26.49816 * 9 7 2 28 28 H 0.96997 * 120.00843 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.44290 * 30.74411 * 10 9 7 30 30 H 1.08997 * 109.45066 * 150.66088 * 10 9 7 31 31 H 1.09000 * 109.33095 * 48.99347 * 11 10 9 32 32 H 1.09000 * 109.32630 * 168.64752 * 11 10 9 33 33 H 1.09006 * 108.51225 * 184.05632 * 12 11 10 34 34 H 1.09002 * 108.51669 * 301.70587 * 12 11 10 35 35 H 1.09000 * 109.45194 * 154.94255 * 13 12 11 36 36 H 1.08992 * 109.61325 * 34.81249 * 13 12 11 37 37 H 0.96999 * 119.99882 * 334.74796 * 16 14 13 38 38 H 1.07994 * 123.00007 * 359.97438 * 20 19 17 39 39 H 1.09007 * 110.35448 * 136.39513 * 24 22 21 40 40 H 1.08998 * 110.36064 * 258.68406 * 24 22 21 41 41 H 1.08994 * 110.95943 * 91.40732 * 25 24 22 42 42 H 1.09002 * 110.96125 * 215.11309 * 25 24 22 43 43 H 1.09006 * 110.33053 * 281.26648 * 26 21 20 44 44 H 1.09000 * 110.33278 * 43.49229 * 26 21 20 45 45 H 1.08993 * 108.94909 * 17.20909 * 27 9 7 46 46 H 1.08999 * 108.94702 * 258.57758 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0602 -1.2193 0.2531 9 7 1.3638 -2.3662 -0.3193 10 6 1.8690 -3.6097 0.2179 11 6 2.9226 -4.2035 -0.7493 12 6 2.2707 -4.7087 -1.9671 13 6 1.5633 -3.6346 -2.7909 14 6 0.1714 -3.4260 -2.2471 15 1 -0.1776 -4.3488 -1.7838 16 7 -0.7291 -3.0620 -3.3438 17 6 -2.0494 -3.3135 -3.2433 18 8 -2.4934 -3.8435 -2.2417 19 6 -2.9496 -2.9549 -4.3431 20 6 -4.2923 -3.1621 -4.3611 21 6 -4.9165 -2.7283 -5.5270 22 6 -4.0788 -2.1823 -6.4245 23 16 -2.4658 -2.1825 -5.8426 24 6 -4.8455 -1.7371 -7.6637 25 6 -6.3201 -1.6790 -7.2180 26 6 -6.3440 -2.7084 -6.0717 27 6 0.1796 -2.2994 -1.1979 28 1 -0.4851 0.8399 0.0004 29 1 2.3302 -3.4250 1.1882 30 1 1.0463 -4.3149 0.3359 31 1 3.6413 -3.4297 -1.0192 32 1 3.4439 -5.0236 -0.2555 33 1 3.0265 -5.1835 -2.5928 34 1 1.5374 -5.4623 -1.6800 35 1 1.5031 -3.9557 -3.8308 36 1 2.1213 -2.7003 -2.7301 37 1 -0.3752 -2.6400 -4.1422 38 1 -4.8274 -3.6223 -3.5437 39 1 -4.5075 -0.7518 -7.9850 40 1 -4.7208 -2.4624 -8.4677 41 1 -6.5785 -0.6847 -6.8539 42 1 -6.9845 -1.9804 -8.0279 43 1 -6.6179 -3.6924 -6.4525 44 1 -7.0415 -2.3945 -5.2951 45 1 0.1734 -1.3379 -1.7111 46 1 -0.7195 -2.3784 -0.5868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034514141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:08 Heat of formation + Delta-G solvation = 15.576972 kcal Electronic energy + Delta-G solvation = -26685.813156 eV Core-core repulsion = 23088.213672 eV Total energy + Delta-G solvation = -3597.599484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.85006 -39.20843 -37.60195 -34.55016 -34.27054 -33.51870 -30.78584 -30.28925 -28.72621 -27.99397 -26.02205 -24.38845 -23.87417 -22.61480 -21.82639 -20.37662 -19.91349 -19.24883 -18.55799 -17.80777 -16.63412 -16.16068 -15.84657 -15.57156 -15.30158 -14.67065 -14.43425 -14.16326 -13.98182 -13.54224 -13.24255 -13.17466 -12.87832 -12.75803 -12.47943 -12.41102 -12.10489 -12.05962 -11.88912 -11.46296 -11.32757 -11.12532 -11.07952 -10.97679 -10.92828 -10.70308 -10.42238 -10.23467 -10.14686 -9.94294 -9.78059 -9.67233 -9.47163 -8.72955 -8.55062 -8.40063 -8.32850 -6.62505 -5.73494 -3.18876 0.55723 1.31557 1.89391 2.32514 3.36699 3.40673 3.45716 3.46860 3.53742 4.25586 4.30534 4.52392 4.69134 4.83228 5.10772 5.22715 5.26584 5.29593 5.35429 5.39837 5.48063 5.48390 5.60596 5.64876 5.68353 5.71048 5.85188 5.87679 5.97772 6.04133 6.19111 6.23046 6.30998 6.34799 6.49741 6.62599 6.66808 6.68380 6.79154 6.90974 6.98020 7.12656 7.40092 7.77120 7.85880 7.88005 8.49007 8.53358 9.26637 9.93785 10.39222 11.32663 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.003258 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.139309 B = 8592.269566 C = 9644.042121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.120 3.880 15 H 0.076 0.924 16 N -0.712 5.712 17 C 0.589 3.411 18 O -0.526 6.526 19 C -0.250 4.250 20 C -0.045 4.045 21 C -0.137 4.137 22 C -0.229 4.229 23 S 0.214 5.786 24 C -0.043 4.043 25 C -0.119 4.119 26 C -0.057 4.057 27 C 0.174 3.826 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.391 0.609 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -6.179 -17.032 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.015 3.985 15 H 0.094 0.906 16 N -0.362 5.362 17 C 0.374 3.626 18 O -0.404 6.404 19 C -0.370 4.370 20 C -0.078 4.078 21 C -0.150 4.150 22 C -0.349 4.349 23 S 0.484 5.516 24 C -0.082 4.082 25 C -0.157 4.157 26 C -0.096 4.096 27 C 0.048 3.952 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.225 0.775 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.963 -5.930 -16.840 19.163 hybrid contribution -0.746 0.698 0.168 1.035 sum -7.709 -5.232 -16.671 19.098 Atomic orbital electron populations 1.70087 1.05142 1.25371 1.53713 1.25065 0.95232 0.98344 1.00786 0.86339 0.79155 0.83962 0.77603 1.21546 1.21818 1.20440 1.19205 0.92418 0.84881 1.42397 0.91567 1.43538 1.32445 1.02104 1.52740 1.20742 0.94109 0.88247 0.94308 1.21504 1.00196 0.99703 0.97376 1.20250 0.98967 0.97385 0.97011 1.21325 0.95624 1.00978 0.97506 1.21841 0.87830 1.00934 0.87865 0.90592 1.46030 1.06780 1.62419 1.20930 1.16838 0.81794 0.78847 0.85168 1.90831 1.75897 1.43316 1.30357 1.24395 0.98350 1.13582 1.00688 1.20197 0.92017 0.98051 0.97484 1.20361 0.97488 1.03136 0.93991 1.25614 0.98601 1.07633 1.03020 1.82783 1.04131 1.56122 1.08541 1.20844 0.93149 1.01436 0.92751 1.22286 0.95466 0.99912 0.98065 1.20981 0.91625 0.99735 0.97251 1.21315 0.89210 0.95055 0.89605 0.93684 0.93534 0.94912 0.92047 0.93429 0.93648 0.93182 0.93107 0.89949 0.77500 0.83209 0.90564 0.89942 0.90598 0.90120 0.90308 0.90599 0.90440 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.01 55.49 0.61 -25.85 16 2 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 3 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -7.02 9.44 -15.06 -0.14 -7.16 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.58 2.27 -172.09 -0.39 -14.97 16 10 C 0.15 3.26 5.65 -4.09 -0.02 3.24 16 11 C -0.15 -2.59 5.74 -28.59 -0.16 -2.75 16 12 C -0.10 -1.59 5.17 -29.71 -0.15 -1.74 16 13 C -0.12 -1.99 5.07 -27.93 -0.14 -2.13 16 14 C 0.12 2.36 2.27 -68.50 -0.16 2.20 16 15 H 0.08 1.59 6.73 -51.93 -0.35 1.24 16 16 N -0.71 -12.53 4.97 -55.70 -0.28 -12.81 16 17 C 0.59 11.05 7.74 -12.89 -0.10 10.95 16 18 O -0.53 -11.79 16.48 5.19 0.09 -11.71 16 19 C -0.25 -3.88 6.41 -37.07 -0.24 -4.11 16 20 C -0.04 -0.64 9.99 -40.08 -0.40 -1.04 16 21 C -0.14 -1.63 6.49 -104.59 -0.68 -2.31 16 22 C -0.23 -2.57 7.10 -34.85 -0.25 -2.82 16 23 S 0.21 2.59 22.15 -107.50 -2.38 0.21 16 24 C -0.04 -0.34 6.81 -26.45 -0.18 -0.52 16 25 C -0.12 -0.81 7.11 -25.56 -0.18 -0.99 16 26 C -0.06 -0.49 6.81 -26.26 -0.18 -0.66 16 27 C 0.17 4.28 4.25 -2.94 -0.01 4.26 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16 30 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 35 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 36 H 0.08 1.59 7.47 -51.93 -0.39 1.20 16 37 H 0.39 5.86 7.65 -40.82 -0.31 5.55 16 38 H 0.15 2.13 8.04 -52.49 -0.42 1.71 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.09 6.31 -51.93 -0.33 1.76 16 46 H 0.03 0.92 8.03 -51.93 -0.42 0.51 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -32.05 373.76 -12.03 -44.07 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.20 Total: 4.28 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.08 Total: -5.55 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.06 Total: -53.62 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.38 Total: 0.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.05 -12.03 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034514141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.651 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds