Wall clock time and date at job start Tue Mar 31 2020 18:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99859 * 2 1 4 4 H 1.48495 * 109.46820 * 270.00203 * 3 2 1 5 5 H 1.48502 * 109.47000 * 29.99960 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99999 * 3 2 1 7 7 C 1.38809 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00494 * 195.66649 * 7 2 1 9 9 N 1.36944 * 119.99830 * 15.67161 * 7 2 1 10 10 C 1.44577 * 118.64673 * 206.52154 * 9 7 2 11 11 C 1.54862 * 109.60201 * 270.70659 * 10 9 7 12 12 C 1.47088 * 110.31786 * 288.72852 * 11 10 9 13 13 C 1.52729 * 114.22796 * 62.83977 * 12 11 10 14 14 C 1.50889 * 109.27228 * 274.82700 * 13 12 11 15 15 H 1.09001 * 109.36196 * 331.92551 * 14 13 12 16 16 N 1.46492 * 109.36778 * 212.17903 * 14 13 12 17 17 C 1.34781 * 120.00105 * 154.74493 * 16 14 13 18 18 O 1.21701 * 119.99623 * 359.97438 * 17 16 14 19 19 C 1.46583 * 119.99901 * 180.27737 * 17 16 14 20 20 C 1.35875 * 125.41224 * 179.72343 * 19 17 16 21 21 C 1.39174 * 113.99573 * 179.97438 * 20 19 17 22 22 C 1.34363 * 113.99837 * 359.97438 * 21 20 19 23 23 S 1.71483 * 111.07970 * 359.78050 * 22 21 20 24 24 C 1.52365 * 110.38671 * 180.02562 * 22 21 20 25 25 C 1.54164 * 104.90247 * 17.54298 * 24 22 21 26 26 C 1.52814 * 136.18924 * 179.97438 * 21 20 19 27 27 C 1.47609 * 118.64015 * 26.49816 * 9 7 2 28 28 H 0.96997 * 120.00843 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.44290 * 30.74411 * 10 9 7 30 30 H 1.08997 * 109.45066 * 150.66088 * 10 9 7 31 31 H 1.09000 * 109.33095 * 48.99347 * 11 10 9 32 32 H 1.09000 * 109.32630 * 168.64752 * 11 10 9 33 33 H 1.09006 * 108.51225 * 184.05632 * 12 11 10 34 34 H 1.09002 * 108.51669 * 301.70587 * 12 11 10 35 35 H 1.09000 * 109.45194 * 154.94255 * 13 12 11 36 36 H 1.08992 * 109.61325 * 34.81249 * 13 12 11 37 37 H 0.96999 * 119.99882 * 334.74796 * 16 14 13 38 38 H 1.07994 * 123.00007 * 359.97438 * 20 19 17 39 39 H 1.09007 * 110.35448 * 136.39513 * 24 22 21 40 40 H 1.08998 * 110.36064 * 258.68406 * 24 22 21 41 41 H 1.08994 * 110.95943 * 91.40732 * 25 24 22 42 42 H 1.09002 * 110.96125 * 215.11309 * 25 24 22 43 43 H 1.09006 * 110.33053 * 281.26648 * 26 21 20 44 44 H 1.09000 * 110.33278 * 43.49229 * 26 21 20 45 45 H 1.08993 * 108.94909 * 17.20909 * 27 9 7 46 46 H 1.08999 * 108.94702 * 258.57758 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0602 -1.2193 0.2531 9 7 1.3638 -2.3662 -0.3193 10 6 1.8690 -3.6097 0.2179 11 6 2.9226 -4.2035 -0.7493 12 6 2.2707 -4.7087 -1.9671 13 6 1.5633 -3.6346 -2.7909 14 6 0.1714 -3.4260 -2.2471 15 1 -0.1776 -4.3488 -1.7838 16 7 -0.7291 -3.0620 -3.3438 17 6 -2.0494 -3.3135 -3.2433 18 8 -2.4934 -3.8435 -2.2417 19 6 -2.9496 -2.9549 -4.3431 20 6 -4.2923 -3.1621 -4.3611 21 6 -4.9165 -2.7283 -5.5270 22 6 -4.0788 -2.1823 -6.4245 23 16 -2.4658 -2.1825 -5.8426 24 6 -4.8455 -1.7371 -7.6637 25 6 -6.3201 -1.6790 -7.2180 26 6 -6.3440 -2.7084 -6.0717 27 6 0.1796 -2.2994 -1.1979 28 1 -0.4851 0.8399 0.0004 29 1 2.3302 -3.4250 1.1882 30 1 1.0463 -4.3149 0.3359 31 1 3.6413 -3.4297 -1.0192 32 1 3.4439 -5.0236 -0.2555 33 1 3.0265 -5.1835 -2.5928 34 1 1.5374 -5.4623 -1.6800 35 1 1.5031 -3.9557 -3.8308 36 1 2.1213 -2.7003 -2.7301 37 1 -0.3752 -2.6400 -4.1422 38 1 -4.8274 -3.6223 -3.5437 39 1 -4.5075 -0.7518 -7.9850 40 1 -4.7208 -2.4624 -8.4677 41 1 -6.5785 -0.6847 -6.8539 42 1 -6.9845 -1.9804 -8.0279 43 1 -6.6179 -3.6924 -6.4525 44 1 -7.0415 -2.3945 -5.2951 45 1 0.1734 -1.3379 -1.7111 46 1 -0.7195 -2.3784 -0.5868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034514141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:06 Heat of formation + Delta-G solvation = -2.933219 kcal Electronic energy + Delta-G solvation = -26686.615818 eV Core-core repulsion = 23088.213672 eV Total energy + Delta-G solvation = -3598.402146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.18976 -40.29123 -39.20652 -36.13317 -35.34725 -35.23270 -32.71193 -31.88627 -29.48819 -28.98453 -27.91965 -26.01283 -25.38243 -24.07523 -22.71137 -21.77977 -21.22964 -20.93219 -19.64237 -18.93744 -18.61442 -17.41611 -17.13984 -16.92662 -16.59483 -16.10792 -15.95853 -15.63088 -15.39030 -15.24397 -14.90913 -14.37482 -14.11165 -13.84722 -13.76163 -13.71480 -13.36254 -13.02858 -12.98283 -12.96651 -12.83002 -12.70626 -12.47220 -12.19290 -12.08308 -12.05489 -11.93923 -11.89152 -11.71118 -11.57420 -11.42307 -11.21308 -11.15247 -10.52507 -10.18527 -9.67321 -9.33298 -8.68435 -7.85261 -5.34536 -0.53803 0.30515 0.88353 1.26284 1.45690 1.45797 1.55851 1.97424 2.14702 2.51374 3.26354 3.44158 3.55796 3.65781 3.87111 3.89211 4.04083 4.15279 4.18931 4.25784 4.35209 4.39011 4.42950 4.59800 4.63749 4.80827 4.81138 4.82996 4.90570 4.92748 4.96669 5.04930 5.09906 5.15758 5.23712 5.27321 5.28898 5.31916 5.36084 5.37680 5.43239 5.51493 5.61823 5.67761 5.76156 6.36854 6.42239 7.06076 7.16127 7.90945 8.32461 9.18974 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.003258 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.139309 B = 8592.269566 C = 9644.042121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.108 4.108 14 C 0.135 3.865 15 H 0.063 0.937 16 N -0.705 5.705 17 C 0.585 3.415 18 O -0.577 6.577 19 C -0.295 4.295 20 C -0.046 4.046 21 C -0.157 4.157 22 C -0.219 4.219 23 S 0.251 5.749 24 C -0.044 4.044 25 C -0.112 4.112 26 C -0.057 4.057 27 C 0.196 3.804 28 H 0.246 0.754 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.406 0.594 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.048 0.952 46 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -6.428 -20.455 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.171 4.171 12 C -0.138 4.138 13 C -0.146 4.146 14 C 0.030 3.970 15 H 0.081 0.919 16 N -0.355 5.355 17 C 0.373 3.627 18 O -0.458 6.458 19 C -0.415 4.415 20 C -0.080 4.080 21 C -0.169 4.169 22 C -0.339 4.339 23 S 0.521 5.479 24 C -0.083 4.083 25 C -0.150 4.150 26 C -0.096 4.096 27 C 0.069 3.931 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.242 0.758 38 H 0.156 0.844 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.066 0.934 46 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges -6.054 -6.198 -20.295 22.067 hybrid contribution -1.087 0.748 1.246 1.815 sum -7.141 -5.451 -19.049 21.061 Atomic orbital electron populations 1.70301 1.06867 1.25510 1.55761 1.25861 0.95894 1.01708 1.01251 0.85272 0.78074 0.79486 0.77678 1.20867 1.22708 1.19032 1.19551 0.92725 0.85748 1.41106 0.90962 1.43747 1.32138 1.02940 1.53443 1.20973 0.95043 0.86970 0.95196 1.21317 0.98586 1.00138 0.97107 1.20272 0.99792 0.96942 0.96754 1.21274 0.92978 1.00724 0.99620 1.21454 0.90156 0.97951 0.87459 0.91918 1.45895 1.06485 1.62301 1.20825 1.17345 0.82217 0.77765 0.85419 1.90786 1.76740 1.45676 1.32630 1.24122 0.98394 1.16939 1.02040 1.20373 0.91919 0.97479 0.98249 1.20664 0.99730 1.03397 0.93129 1.26265 0.97983 1.05494 1.04124 1.82526 1.04666 1.54820 1.05890 1.21090 0.93090 1.02643 0.91487 1.22336 0.95232 0.99413 0.98039 1.21126 0.89306 1.01259 0.97948 1.20893 0.86964 0.95551 0.89643 0.94503 0.94247 0.95313 0.92931 0.90332 0.90003 0.92943 0.89632 0.91870 0.75798 0.84441 0.89182 0.87802 0.90528 0.87276 0.88950 0.90450 0.93369 1.00869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 11.01 21.65 0.24 -57.96 16 2 C -0.05 -2.98 4.87 84.86 0.41 -2.56 16 3 Si 0.97 45.56 29.58 68.60 2.03 47.59 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.26 -14.45 9.44 84.03 0.79 -13.66 16 8 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 9 N -0.60 -30.94 2.27 -698.37 -1.58 -32.53 16 10 C 0.14 6.22 5.65 87.37 0.49 6.71 16 11 C -0.13 -4.37 5.74 29.39 0.17 -4.21 16 12 C -0.10 -2.97 5.17 28.67 0.15 -2.82 16 13 C -0.11 -3.57 5.07 29.82 0.15 -3.41 16 14 C 0.14 5.51 2.27 44.63 0.10 5.61 16 15 H 0.06 2.74 6.73 -2.39 -0.02 2.72 16 16 N -0.70 -25.76 4.97 -448.35 -2.23 -27.99 16 17 C 0.58 23.37 7.74 86.42 0.67 24.04 16 18 O -0.58 -28.05 16.48 -4.35 -0.07 -28.12 16 19 C -0.30 -9.52 6.41 23.90 0.15 -9.37 16 20 C -0.05 -1.38 9.99 21.95 0.22 -1.16 16 21 C -0.16 -3.60 6.49 -19.84 -0.13 -3.73 16 22 C -0.22 -4.46 7.10 25.34 0.18 -4.28 16 23 S 0.25 5.82 22.15 -56.49 -1.25 4.57 16 24 C -0.04 -0.53 6.81 30.78 0.21 -0.32 16 25 C -0.11 -1.12 7.11 31.35 0.22 -0.90 16 26 C -0.06 -0.85 6.81 30.90 0.21 -0.64 16 27 C 0.20 10.25 4.25 86.49 0.37 10.61 16 28 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 30 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.05 1.57 7.35 -2.39 -0.02 1.55 16 35 H 0.09 2.25 7.94 -2.39 -0.02 2.23 16 36 H 0.06 2.37 7.47 -2.39 -0.02 2.36 16 37 H 0.41 12.23 7.65 -92.71 -0.71 11.52 16 38 H 0.14 4.28 8.04 -2.91 -0.02 4.26 16 39 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 2.77 6.31 -2.39 -0.02 2.75 16 46 H -0.03 -1.69 8.03 -2.39 -0.02 -1.71 16 Total: -1.00 -75.63 373.76 1.78 -73.85 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.37 Total: -0.09 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -3.57 Total: -118.47 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.07 Total: -28.12 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.25 Total: 4.57 kcal Total: -75.63 1.78 -73.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034514141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.917 kcal (2) G-P(sol) polarization free energy of solvation -75.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds