Wall clock time and date at job start Tue Mar 31 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46911 * 300.00211 * 3 2 1 6 6 H 1.48497 * 109.46983 * 60.00153 * 3 2 1 7 7 C 1.38817 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99822 * 196.93311 * 7 2 1 9 9 N 1.36936 * 119.99925 * 16.93321 * 7 2 1 10 10 C 1.47160 * 120.98273 * 26.22167 * 9 7 2 11 11 C 1.53286 * 108.38446 * 129.48681 * 10 9 7 12 12 O 1.42958 * 109.26603 * 52.27729 * 11 10 9 13 13 C 1.42960 * 114.17124 * 297.50082 * 12 11 10 14 14 H 1.09004 * 109.50911 * 302.55076 * 13 12 11 15 15 C 1.53000 * 109.51632 * 182.45129 * 13 12 11 16 16 N 1.46500 * 109.47298 * 65.09776 * 15 13 12 17 17 C 1.34774 * 119.99919 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00007 * 180.02562 * 17 16 15 20 20 H 1.09001 * 112.50266 * 309.67080 * 19 17 16 21 21 C 1.52882 * 113.22121 * 179.79500 * 19 17 16 22 22 C 1.51436 * 84.74026 * 244.76732 * 21 19 17 23 23 C 1.38957 * 145.49703 * 179.97438 * 22 21 19 24 24 C 1.37937 * 120.35595 * 180.02562 * 23 22 21 25 25 C 1.38467 * 120.15396 * 359.97438 * 24 23 22 26 26 F 1.35095 * 120.15215 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.69078 * 0.02562 * 25 24 23 28 28 C 1.38207 * 120.10317 * 0.02562 * 27 25 24 29 29 C 1.47156 * 120.98527 * 206.24250 * 9 7 2 30 30 H 0.96996 * 119.99881 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.67620 * 249.20704 * 10 9 7 32 32 H 1.08996 * 109.68177 * 9.72188 * 10 9 7 33 33 H 1.09005 * 109.51365 * 172.22284 * 11 10 9 34 34 H 1.09002 * 109.51520 * 292.32590 * 11 10 9 35 35 H 1.09008 * 109.46441 * 305.09886 * 15 13 12 36 36 H 1.08996 * 109.47605 * 185.10438 * 15 13 12 37 37 H 0.96999 * 120.00084 * 0.02562 * 16 15 13 38 38 H 1.09002 * 113.98800 * 358.71560 * 21 19 17 39 39 H 1.08997 * 113.98552 * 130.81735 * 21 19 17 40 40 H 1.08001 * 119.82779 * 0.30351 * 23 22 21 41 41 H 1.08008 * 119.92516 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.94960 * 179.97438 * 27 25 24 43 43 H 1.09002 * 109.68165 * 110.78500 * 29 9 7 44 44 H 1.09003 * 109.67649 * 350.23926 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2719 9 7 1.3701 -2.3622 -0.3465 10 6 0.1977 -2.3443 -1.2356 11 6 0.4249 -3.3655 -2.3560 12 8 0.7659 -4.6289 -1.7805 13 6 1.9814 -4.6205 -1.0281 14 1 2.8012 -4.2871 -1.6645 15 6 2.2745 -6.0317 -0.5146 16 7 2.5308 -6.9211 -1.6502 17 6 2.8131 -8.2216 -1.4371 18 8 2.8555 -8.6555 -0.3053 19 6 3.0773 -9.1365 -2.6052 20 1 2.3047 -9.0689 -3.3711 21 6 3.3856 -10.5743 -2.1870 22 6 4.7531 -10.3059 -2.7795 23 6 6.0121 -10.8334 -3.0394 24 6 6.9725 -10.0680 -3.6676 25 6 6.6876 -8.7665 -4.0447 26 9 7.6283 -8.0168 -4.6595 27 6 5.4350 -8.2369 -3.7879 28 6 4.4739 -9.0044 -3.1574 29 6 1.8339 -3.6636 0.1603 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6955 -2.6116 -0.6708 32 1 0.0770 -1.3493 -1.6640 33 1 -0.4862 -3.4680 -2.9455 34 1 1.2378 -3.0266 -2.9982 35 1 1.4163 -6.3990 0.0482 36 1 3.1507 -6.0079 0.1333 37 1 2.4973 -6.5740 -2.5553 38 1 3.3928 -10.7302 -1.1082 39 1 2.8088 -11.3258 -2.7261 40 1 6.2386 -11.8495 -2.7521 41 1 7.9487 -10.4851 -3.8666 42 1 5.2084 -7.2221 -4.0798 43 1 1.1056 -4.0636 0.8657 44 1 2.7972 -3.5423 0.6558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035491558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:03 Heat of formation + Delta-G solvation = -35.930715 kcal Electronic energy + Delta-G solvation = -28044.307733 eV Core-core repulsion = 23878.261532 eV Total energy + Delta-G solvation = -4166.046201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.18541 -41.35467 -39.24335 -38.39111 -35.45419 -34.90074 -34.33183 -31.66486 -31.23344 -30.71864 -28.17707 -27.43402 -26.10020 -24.73102 -23.24270 -22.84661 -21.83528 -21.33048 -20.25480 -19.54416 -17.92142 -17.39150 -16.98136 -16.86828 -16.16148 -15.90307 -15.80352 -15.50351 -15.25232 -15.00859 -14.52822 -14.42718 -14.23176 -13.93087 -13.83844 -13.37084 -13.32072 -13.09454 -12.81466 -12.67221 -12.34961 -12.19502 -12.08641 -11.73050 -11.58870 -11.16691 -10.97795 -10.90711 -10.75260 -10.45532 -10.29157 -10.15161 -10.01775 -9.70818 -9.31439 -9.12290 -9.06102 -8.80137 -8.58685 -6.80360 -5.88578 -3.32340 0.71468 0.81944 2.43193 3.02733 3.23016 3.31074 3.39305 3.41406 3.51953 3.89708 4.05749 4.16997 4.18238 4.39403 4.58404 4.67021 4.86057 4.93914 5.08165 5.12370 5.26621 5.29124 5.38643 5.43182 5.46542 5.56796 5.69365 5.73661 5.75325 5.80370 5.82971 5.97696 6.09903 6.22373 6.23433 6.31963 6.43412 6.44881 6.49266 6.70355 7.05439 7.44245 7.47337 7.67142 7.79895 8.12327 8.28857 9.07019 9.69618 10.26184 11.19581 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002447 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.520336 B =11439.922955 C =12483.623786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.130 3.870 16 N -0.714 5.714 17 C 0.526 3.474 18 O -0.537 6.537 19 C -0.063 4.063 20 H 0.124 0.876 21 C -0.056 4.056 22 C -0.125 4.125 23 C -0.072 4.072 24 C -0.146 4.146 25 C 0.099 3.901 26 F -0.136 7.136 27 C -0.116 4.116 28 C -0.099 4.099 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.030 0.970 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.276 -21.206 -9.789 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.311 3.689 18 O -0.414 6.414 19 C -0.084 4.084 20 H 0.141 0.859 21 C -0.093 4.093 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.165 4.165 25 C 0.080 3.920 26 F -0.114 7.114 27 C -0.135 4.135 28 C -0.099 4.099 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.238 0.762 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.048 0.952 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.135 -21.452 -8.988 24.641 hybrid contribution 0.714 1.683 -0.634 1.936 sum 8.850 -19.769 -9.623 23.701 Atomic orbital electron populations 1.70043 1.05285 1.25605 1.53731 1.25055 0.95357 0.98519 1.00725 0.86182 0.79332 0.83652 0.77371 1.20183 1.21461 1.21587 1.19239 0.92671 0.84447 1.42107 0.91281 1.44083 1.33602 1.00992 1.53113 1.21449 0.89132 0.98343 0.89745 1.23323 0.99025 0.84850 0.96599 1.87781 1.41261 1.32585 1.69287 1.22799 0.87555 0.93796 0.95347 0.92369 1.21458 1.01712 0.87925 0.88318 1.45924 1.70604 1.08896 1.11016 1.19989 0.76569 0.82519 0.89835 1.90703 1.51596 1.75479 1.23637 1.21371 0.94398 0.95962 0.96698 0.85862 1.21752 0.89934 0.94207 1.03402 1.22419 0.95399 0.95945 0.98793 1.20362 0.91140 1.00050 0.97452 1.20992 1.00979 0.92913 1.01581 1.17317 0.86502 0.90072 0.98119 1.91523 1.63428 1.76038 1.80430 1.20088 0.91121 1.01109 1.01188 1.21006 0.95440 0.95641 0.97844 1.21439 0.98975 0.87229 0.92915 0.93514 0.95343 0.88739 0.90009 0.94110 0.90455 0.90092 0.76170 0.86593 0.87849 0.85121 0.84312 0.84648 0.95192 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.14 55.49 0.62 -25.10 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.87 9.65 -15.06 -0.15 -7.01 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.64 3.05 -171.83 -0.52 -15.16 16 10 C 0.14 3.25 5.45 -3.53 -0.02 3.23 16 11 C 0.04 0.74 6.98 37.31 0.26 1.00 16 12 O -0.39 -7.02 10.33 -35.23 -0.36 -7.38 16 13 C 0.06 1.10 2.81 -26.58 -0.07 1.02 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.88 5.34 -4.04 -0.02 1.86 16 16 N -0.71 -8.86 5.50 -60.29 -0.33 -9.19 16 17 C 0.53 6.62 7.33 -10.99 -0.08 6.54 16 18 O -0.54 -8.58 15.67 5.55 0.09 -8.49 16 19 C -0.06 -0.57 4.14 -96.56 -0.40 -0.97 16 20 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.06 -0.45 7.91 -27.58 -0.22 -0.67 16 22 C -0.13 -1.14 7.32 -107.55 -0.79 -1.92 16 23 C -0.07 -0.58 10.04 -39.43 -0.40 -0.97 16 24 C -0.15 -1.22 10.01 -39.61 -0.40 -1.62 16 25 C 0.10 0.99 7.31 -39.44 -0.29 0.70 16 26 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 27 C -0.12 -1.15 10.02 -39.53 -0.40 -1.55 16 28 C -0.10 -0.96 7.05 -104.56 -0.74 -1.70 16 29 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 38 H 0.12 1.09 7.02 -51.93 -0.36 0.72 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -32.00 369.45 -9.81 -41.80 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.06 Total: 2.79 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.81 Total: 0.38 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.24 Total: -49.45 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.28 Total: -15.88 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.00 -9.81 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035491558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.874 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds