Wall clock time and date at job start Tue Mar 31 2020 18:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46911 * 300.00211 * 3 2 1 6 6 H 1.48497 * 109.46983 * 60.00153 * 3 2 1 7 7 C 1.38817 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99822 * 196.93311 * 7 2 1 9 9 N 1.36936 * 119.99925 * 16.93321 * 7 2 1 10 10 C 1.47160 * 120.98273 * 26.22167 * 9 7 2 11 11 C 1.53286 * 108.38446 * 129.48681 * 10 9 7 12 12 O 1.42958 * 109.26603 * 52.27729 * 11 10 9 13 13 C 1.42960 * 114.17124 * 297.50082 * 12 11 10 14 14 H 1.09004 * 109.50911 * 302.55076 * 13 12 11 15 15 C 1.53000 * 109.51632 * 182.45129 * 13 12 11 16 16 N 1.46500 * 109.47298 * 65.09776 * 15 13 12 17 17 C 1.34774 * 119.99919 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00007 * 180.02562 * 17 16 15 20 20 H 1.09001 * 112.50266 * 309.67080 * 19 17 16 21 21 C 1.52882 * 113.22121 * 179.79500 * 19 17 16 22 22 C 1.51436 * 84.74026 * 244.76732 * 21 19 17 23 23 C 1.38957 * 145.49703 * 179.97438 * 22 21 19 24 24 C 1.37937 * 120.35595 * 180.02562 * 23 22 21 25 25 C 1.38467 * 120.15396 * 359.97438 * 24 23 22 26 26 F 1.35095 * 120.15215 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.69078 * 0.02562 * 25 24 23 28 28 C 1.38207 * 120.10317 * 0.02562 * 27 25 24 29 29 C 1.47156 * 120.98527 * 206.24250 * 9 7 2 30 30 H 0.96996 * 119.99881 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.67620 * 249.20704 * 10 9 7 32 32 H 1.08996 * 109.68177 * 9.72188 * 10 9 7 33 33 H 1.09005 * 109.51365 * 172.22284 * 11 10 9 34 34 H 1.09002 * 109.51520 * 292.32590 * 11 10 9 35 35 H 1.09008 * 109.46441 * 305.09886 * 15 13 12 36 36 H 1.08996 * 109.47605 * 185.10438 * 15 13 12 37 37 H 0.96999 * 120.00084 * 0.02562 * 16 15 13 38 38 H 1.09002 * 113.98800 * 358.71560 * 21 19 17 39 39 H 1.08997 * 113.98552 * 130.81735 * 21 19 17 40 40 H 1.08001 * 119.82779 * 0.30351 * 23 22 21 41 41 H 1.08008 * 119.92516 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.94960 * 179.97438 * 27 25 24 43 43 H 1.09002 * 109.68165 * 110.78500 * 29 9 7 44 44 H 1.09003 * 109.67649 * 350.23926 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2719 9 7 1.3701 -2.3622 -0.3465 10 6 0.1977 -2.3443 -1.2356 11 6 0.4249 -3.3655 -2.3560 12 8 0.7659 -4.6289 -1.7805 13 6 1.9814 -4.6205 -1.0281 14 1 2.8012 -4.2871 -1.6645 15 6 2.2745 -6.0317 -0.5146 16 7 2.5308 -6.9211 -1.6502 17 6 2.8131 -8.2216 -1.4371 18 8 2.8555 -8.6555 -0.3053 19 6 3.0773 -9.1365 -2.6052 20 1 2.3047 -9.0689 -3.3711 21 6 3.3856 -10.5743 -2.1870 22 6 4.7531 -10.3059 -2.7795 23 6 6.0121 -10.8334 -3.0394 24 6 6.9725 -10.0680 -3.6676 25 6 6.6876 -8.7665 -4.0447 26 9 7.6283 -8.0168 -4.6595 27 6 5.4350 -8.2369 -3.7879 28 6 4.4739 -9.0044 -3.1574 29 6 1.8339 -3.6636 0.1603 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6955 -2.6116 -0.6708 32 1 0.0770 -1.3493 -1.6640 33 1 -0.4862 -3.4680 -2.9455 34 1 1.2378 -3.0266 -2.9982 35 1 1.4163 -6.3990 0.0482 36 1 3.1507 -6.0079 0.1333 37 1 2.4973 -6.5740 -2.5553 38 1 3.3928 -10.7302 -1.1082 39 1 2.8088 -11.3258 -2.7261 40 1 6.2386 -11.8495 -2.7521 41 1 7.9487 -10.4851 -3.8666 42 1 5.2084 -7.2221 -4.0798 43 1 1.1056 -4.0636 0.8657 44 1 2.7972 -3.5423 0.6558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035491558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:02 Heat of formation + Delta-G solvation = -55.729656 kcal Electronic energy + Delta-G solvation = -28045.166279 eV Core-core repulsion = 23878.261532 eV Total energy + Delta-G solvation = -4166.904747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94577 -42.11385 -40.43894 -39.68545 -36.58183 -36.08260 -35.73879 -33.39560 -32.42608 -31.84565 -29.46414 -28.58028 -27.38667 -25.81406 -24.95197 -23.78529 -23.09047 -22.17523 -21.58211 -20.75045 -18.95251 -18.68754 -18.16097 -17.66303 -17.53440 -17.06771 -16.84604 -16.61788 -16.23967 -16.18791 -16.10855 -15.57684 -15.44496 -15.12187 -15.00089 -14.70166 -14.57429 -14.48918 -14.09636 -13.61967 -13.43482 -13.24225 -13.04375 -12.85368 -12.74691 -12.69698 -12.52703 -12.38106 -12.18750 -12.07474 -11.89213 -11.67168 -11.36636 -11.06716 -10.82250 -10.56735 -10.15806 -9.99923 -9.49588 -8.77830 -7.93476 -5.40869 0.03456 0.15645 1.44578 1.46663 1.48424 1.57211 2.07734 2.46026 2.52471 2.75155 2.80968 3.21689 3.25729 3.39959 3.46832 3.51748 3.79621 3.96467 3.97144 4.05511 4.22855 4.25494 4.32150 4.46321 4.48900 4.50827 4.59726 4.62474 4.69843 4.75679 4.84602 4.88435 4.96536 5.04062 5.05995 5.09239 5.19569 5.22681 5.35763 5.53805 5.56308 5.59676 5.84000 6.23336 6.30842 6.47910 7.04199 7.15058 7.72035 8.25347 9.12655 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002447 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.520336 B =11439.922955 C =12483.623786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.387 6.387 13 C 0.080 3.920 14 H 0.067 0.933 15 C 0.141 3.859 16 N -0.709 5.709 17 C 0.525 3.475 18 O -0.574 6.574 19 C -0.056 4.056 20 H 0.152 0.848 21 C -0.050 4.050 22 C -0.132 4.132 23 C -0.073 4.073 24 C -0.144 4.144 25 C 0.077 3.923 26 F -0.146 7.146 27 C -0.127 4.127 28 C -0.114 4.114 29 C 0.116 3.884 30 H 0.252 0.748 31 H -0.001 1.001 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.019 0.981 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -22.939 -11.147 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.307 6.307 13 C 0.020 3.980 14 H 0.085 0.915 15 C 0.016 3.984 16 N -0.359 5.359 17 C 0.312 3.688 18 O -0.454 6.454 19 C -0.077 4.077 20 H 0.170 0.830 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.091 4.091 24 C -0.162 4.162 25 C 0.058 3.942 26 F -0.124 7.124 27 C -0.146 4.146 28 C -0.115 4.115 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.251 0.749 38 H 0.120 0.880 39 H 0.153 0.847 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.157 0.843 43 H 0.037 0.963 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.224 -23.211 -10.374 27.045 hybrid contribution 0.394 2.169 -0.150 2.209 sum 9.618 -21.042 -10.525 25.417 Atomic orbital electron populations 1.70194 1.06711 1.26040 1.55183 1.25827 0.96107 1.01612 1.01003 0.85160 0.78590 0.79526 0.76865 1.19008 1.21358 1.22008 1.19571 0.92992 0.85580 1.41413 0.91063 1.44364 1.33725 1.01872 1.53839 1.21326 0.87900 0.98466 0.90649 1.23154 1.00782 0.83581 0.94806 1.87797 1.41765 1.31929 1.69167 1.22621 0.87422 0.94235 0.93690 0.91472 1.21182 1.01417 0.86884 0.88912 1.45836 1.70393 1.08842 1.10869 1.20594 0.75349 0.82506 0.90367 1.90690 1.53153 1.76093 1.25465 1.21432 0.95011 0.95534 0.95732 0.83011 1.21804 0.89721 0.94266 1.02849 1.22695 0.96164 0.95814 0.98513 1.20683 0.90544 1.01216 0.96662 1.21290 1.02040 0.92217 1.00667 1.17582 0.86594 0.90898 0.99108 1.91493 1.63763 1.76411 1.80767 1.20215 0.91359 1.01505 1.01528 1.21093 0.95737 0.96154 0.98468 1.21601 0.98708 0.86325 0.94383 0.93894 0.98267 0.91435 0.87184 0.93120 0.91568 0.89761 0.74949 0.88035 0.84726 0.82471 0.82269 0.84335 0.96348 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.63 11.14 21.65 0.24 -54.39 16 2 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 3 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.27 -14.40 9.65 84.03 0.81 -13.59 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -30.54 3.05 -697.54 -2.13 -32.67 16 10 C 0.14 6.75 5.45 86.35 0.47 7.22 16 11 C 0.05 1.95 6.98 72.08 0.50 2.45 16 12 O -0.39 -13.30 10.33 -148.98 -1.54 -14.84 16 13 C 0.08 2.60 2.81 30.69 0.09 2.68 16 14 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 15 C 0.14 3.93 5.34 86.38 0.46 4.40 16 16 N -0.71 -16.35 5.50 -463.05 -2.55 -18.90 16 17 C 0.52 12.39 7.33 87.66 0.64 13.03 16 18 O -0.57 -17.90 15.67 -3.04 -0.05 -17.95 16 19 C -0.06 -0.89 4.14 -14.64 -0.06 -0.95 16 20 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.05 -0.67 7.91 30.04 0.24 -0.43 16 22 C -0.13 -2.08 7.32 -21.76 -0.16 -2.24 16 23 C -0.07 -0.98 10.04 22.37 0.22 -0.76 16 24 C -0.14 -2.11 10.01 22.25 0.22 -1.89 16 25 C 0.08 1.46 7.31 22.36 0.16 1.63 16 26 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 27 C -0.13 -2.38 10.02 22.30 0.22 -2.16 16 28 C -0.11 -2.00 7.05 -19.82 -0.14 -2.14 16 29 C 0.12 4.75 6.02 86.35 0.52 5.27 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 33 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.41 7.91 8.47 -92.71 -0.79 7.12 16 38 H 0.10 1.74 7.02 -2.39 -0.02 1.72 16 39 H 0.13 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 Total: -1.00 -70.15 369.45 1.66 -68.49 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.25 Total: 16.28 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.63 Total: 10.19 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.43 Total: -105.96 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.59 Total: -32.79 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.15 1.66 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035491558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.760 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds