Wall clock time and date at job start Tue Mar 31 2020 17:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35472 * 116.99725 * 2 1 4 4 N 1.32416 * 119.11505 * 359.97438 * 3 2 1 5 5 C 1.32136 * 120.97721 * 179.97438 * 4 3 2 6 6 C 1.38805 * 119.21953 * 359.74649 * 5 4 3 7 7 C 1.39465 * 118.38558 * 0.51157 * 6 5 4 8 8 C 1.48459 * 120.51834 * 179.76237 * 7 6 5 9 9 O 1.21481 * 119.99887 * 8.85900 * 8 7 6 10 10 N 1.34767 * 120.00446 * 188.86022 * 8 7 6 11 11 C 1.47127 * 121.05483 * 180.37424 * 10 8 7 12 12 C 1.53227 * 108.71404 * 232.25400 * 11 10 8 13 13 O 1.43101 * 109.34860 * 305.85370 * 12 11 10 14 14 C 1.42494 * 113.98784 * 59.95902 * 13 12 11 15 15 C 1.53454 * 113.77165 * 73.26196 * 14 13 12 16 16 N 1.47673 * 85.97390 * 91.26851 * 15 14 13 17 17 C 1.36936 * 134.45937 * 204.26695 * 16 15 14 18 18 H 1.07995 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99815 * 0.03812 * 17 16 15 20 20 N 1.31623 * 120.00445 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47106 * 59.99377 * 21 19 17 23 23 H 1.48498 * 109.47014 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46883 * 299.99782 * 21 19 17 25 25 C 1.47672 * 91.08094 * 24.29612 * 16 15 14 26 26 C 1.47342 * 121.05219 * 0.39316 * 10 8 7 27 27 N 1.32085 * 119.11426 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46973 * 299.99289 * 1 2 3 29 29 H 1.08989 * 109.47755 * 59.99353 * 1 2 3 30 30 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.39219 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.80854 * 180.25217 * 6 5 4 33 33 H 1.08999 * 109.59888 * 112.48890 * 11 10 8 34 34 H 1.08991 * 109.59560 * 352.02500 * 11 10 8 35 35 H 1.09005 * 109.49689 * 65.81875 * 12 11 10 36 36 H 1.09007 * 109.49146 * 185.89289 * 12 11 10 37 37 H 1.08997 * 113.79724 * 205.53594 * 15 14 13 38 38 H 1.09008 * 113.79280 * 337.00806 * 15 14 13 39 39 H 0.96996 * 119.99982 * 179.97438 * 20 19 17 40 40 H 1.09003 * 113.78885 * 221.43859 * 25 16 15 41 41 H 1.08996 * 113.90297 * 89.98063 * 25 16 15 42 42 H 1.09001 * 109.74849 * 251.24269 * 26 10 8 43 43 H 1.09002 * 109.74356 * 11.95816 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2071 0.0000 4 7 1.3056 2.3063 -0.0005 5 6 1.8669 3.5026 0.0000 6 6 3.2514 3.6014 0.0064 7 6 4.0002 2.4248 0.0012 8 6 5.4839 2.4754 0.0024 9 8 6.0554 3.5343 0.1699 10 7 6.1968 1.3468 -0.1824 11 6 7.6679 1.3690 -0.1774 12 6 8.1743 0.6859 -1.4521 13 8 7.5974 -0.6198 -1.5514 14 6 6.1735 -0.6213 -1.6077 15 6 5.6071 -0.1396 -2.9501 16 7 5.6365 -1.5597 -3.3537 17 6 5.7004 -2.2144 -4.5547 18 1 5.7084 -3.2940 -4.5815 19 6 5.7552 -1.4903 -5.7377 20 7 5.7451 -0.1745 -5.7051 21 14 5.8431 -2.3833 -7.3762 22 1 4.6427 -3.2426 -7.5366 23 1 5.8915 -1.3902 -8.4792 24 1 7.0646 -3.2270 -7.4151 25 6 5.5685 -1.9910 -1.9430 26 6 5.5277 0.0516 -0.3963 27 7 3.3639 1.2559 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2556 4.3929 -0.0009 32 1 3.7371 4.5661 0.0110 33 1 8.0387 0.8332 0.6964 34 1 8.0179 2.4009 -0.1519 35 1 7.8864 1.2779 -2.3210 36 1 9.2604 0.6017 -1.4127 37 1 4.6022 0.2768 -2.8794 38 1 6.2923 0.4924 -3.5152 39 1 5.7837 0.3314 -6.5318 40 1 6.2231 -2.8303 -1.7078 41 1 4.5530 -2.1261 -1.5709 42 1 5.6532 -0.5777 0.4849 43 1 4.4666 0.2124 -0.5865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053336430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:38 Heat of formation + Delta-G solvation = 44.183767 kcal Electronic energy + Delta-G solvation = -30158.007759 eV Core-core repulsion = 26015.355544 eV Total energy + Delta-G solvation = -4142.652215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69990 -40.19115 -38.91325 -38.19614 -36.04632 -34.92952 -33.88444 -32.17967 -31.72320 -29.97404 -28.13026 -27.66492 -26.12925 -25.39042 -24.97948 -24.24685 -22.91833 -21.87485 -20.28153 -18.88599 -18.42345 -18.28338 -16.89432 -16.75917 -16.67136 -16.31693 -15.91277 -15.51080 -15.23663 -14.87444 -14.79994 -14.36626 -14.23875 -14.18100 -14.00720 -13.66160 -13.31326 -13.18581 -12.68008 -12.32482 -12.28311 -12.01686 -11.57421 -11.37339 -11.22242 -11.07689 -10.98864 -10.82627 -10.75777 -10.58475 -10.44488 -10.21589 -9.88632 -9.55055 -9.31711 -9.18939 -8.87292 -8.76372 -8.20472 -6.82734 -5.70967 -3.02713 0.28929 0.74557 2.24995 2.63110 2.84036 3.43198 3.46689 3.48158 3.58414 3.69509 4.07939 4.17845 4.32504 4.49167 4.65224 4.94627 5.01852 5.05378 5.08650 5.20895 5.23900 5.32956 5.36849 5.38524 5.45772 5.56600 5.61948 5.70918 5.85881 5.99774 6.14932 6.21760 6.40393 6.44646 6.57000 6.58418 6.65089 6.91370 7.04314 7.23598 7.33915 7.54733 7.67055 7.91098 7.99509 8.03160 9.09012 9.75870 10.63449 11.46212 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004574 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.474420 B = 6119.844891 C = 7511.451360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.283 6.283 3 C 0.499 3.501 4 N -0.556 5.556 5 C 0.193 3.807 6 C -0.211 4.211 7 C 0.180 3.820 8 C 0.572 3.428 9 O -0.531 6.531 10 N -0.579 5.579 11 C 0.075 3.925 12 C 0.049 3.951 13 O -0.345 6.345 14 C 0.048 3.952 15 C 0.154 3.846 16 N -0.602 5.602 17 C -0.216 4.216 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.138 3.862 26 C 0.051 3.949 27 N -0.489 5.489 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 6.908 15.582 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.184 6.184 3 C 0.198 3.802 4 N -0.286 5.286 5 C 0.026 3.974 6 C -0.235 4.235 7 C 0.033 3.967 8 C 0.357 3.643 9 O -0.408 6.408 10 N -0.310 5.310 11 C -0.047 4.047 12 C -0.029 4.029 13 O -0.263 6.263 14 C 0.007 3.993 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.344 4.344 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.011 3.989 26 C -0.072 4.072 27 N -0.218 5.218 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.199 0.801 32 H 0.182 0.818 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.282 6.027 15.297 17.982 hybrid contribution 0.019 0.592 -1.027 1.185 sum -7.262 6.619 14.270 17.326 Atomic orbital electron populations 1.23041 0.75395 1.03898 1.02805 1.86157 1.23584 1.22040 1.86583 1.20883 0.85978 0.85067 0.88318 1.68015 1.41552 0.99396 1.19613 1.23093 0.92159 0.94515 0.87596 1.22745 0.95537 1.00857 1.04322 1.21492 0.94889 0.88215 0.92146 1.17674 0.84655 0.83951 0.78027 1.90772 1.70017 1.29111 1.50909 1.48078 1.06964 1.08307 1.67603 1.22431 0.79161 1.03318 0.99779 1.22861 0.98383 0.85763 0.95863 1.87914 1.18557 1.25846 1.93934 1.23737 0.81563 0.99422 0.94614 1.22616 0.97124 0.88956 0.88497 1.45759 1.85573 1.01892 0.99606 1.18958 1.43169 0.90507 0.81748 0.90180 1.24758 1.02654 0.95592 0.97509 1.69810 1.56951 1.04264 1.26134 0.86196 0.77934 0.78267 0.83350 1.21247 1.21651 1.21063 1.22477 0.96853 0.93288 0.86268 1.23916 1.03024 0.82021 0.98231 1.67644 1.07373 1.27576 1.19215 0.91903 0.91651 0.87593 0.80112 0.81760 0.90437 0.88239 0.92156 0.88032 0.95571 0.90766 0.93741 0.92739 0.93053 0.91265 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.36 101.05 1.05 1.44 16 2 O -0.28 -3.79 10.56 -18.11 -0.19 -3.98 16 3 C 0.50 7.01 8.48 -91.37 -0.77 6.24 16 4 N -0.56 -6.60 9.20 -14.74 -0.14 -6.74 16 5 C 0.19 1.83 11.30 -17.21 -0.19 1.63 16 6 C -0.21 -2.36 9.71 -38.91 -0.38 -2.74 16 7 C 0.18 2.60 6.67 -82.65 -0.55 2.05 16 8 C 0.57 9.20 7.71 -12.05 -0.09 9.10 16 9 O -0.53 -9.10 15.92 5.38 0.09 -9.02 16 10 N -0.58 -9.37 3.03 -173.32 -0.52 -9.90 16 11 C 0.08 1.09 6.60 -3.58 -0.02 1.07 16 12 C 0.05 0.81 6.88 37.28 0.26 1.07 16 13 O -0.34 -7.01 10.52 -35.23 -0.37 -7.38 16 14 C 0.05 0.98 1.21 -90.31 -0.11 0.87 16 15 C 0.15 3.81 6.65 -3.17 -0.02 3.79 16 16 N -0.60 -16.11 3.70 -180.32 -0.67 -16.78 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -28.18 11.39 55.49 0.63 -27.55 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.14 2.97 8.33 -3.18 -0.03 2.94 16 26 C 0.05 0.87 5.35 -3.64 -0.02 0.85 16 27 N -0.49 -7.44 6.22 -11.29 -0.07 -7.51 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.16 1.55 7.76 -52.48 -0.41 1.14 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.36 7.06 -51.93 -0.37 1.00 16 35 H 0.06 1.12 7.20 -51.93 -0.37 0.75 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 38 H 0.07 2.06 6.31 -51.92 -0.33 1.74 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.16 2.86 3.69 -87.50 -0.32 2.54 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -35.79 356.00 -7.60 -43.38 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.55 Total: 0.90 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: -1.15 Total: 21.53 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.77 Total: -68.47 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.48 Total: -20.38 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.79 -7.60 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053336430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.569 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds