Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35472 * 116.99725 * 2 1 4 4 N 1.32416 * 119.11505 * 359.97438 * 3 2 1 5 5 C 1.32136 * 120.97721 * 179.97438 * 4 3 2 6 6 C 1.38805 * 119.21953 * 359.74649 * 5 4 3 7 7 C 1.39465 * 118.38558 * 0.51157 * 6 5 4 8 8 C 1.48459 * 120.51834 * 179.76237 * 7 6 5 9 9 O 1.21481 * 119.99887 * 8.85900 * 8 7 6 10 10 N 1.34767 * 120.00446 * 188.86022 * 8 7 6 11 11 C 1.47127 * 121.05483 * 180.37424 * 10 8 7 12 12 C 1.53227 * 108.71404 * 232.25400 * 11 10 8 13 13 O 1.43101 * 109.34860 * 305.85370 * 12 11 10 14 14 C 1.42494 * 113.98784 * 59.95902 * 13 12 11 15 15 C 1.53454 * 113.77165 * 73.26196 * 14 13 12 16 16 N 1.47673 * 85.97390 * 91.26851 * 15 14 13 17 17 C 1.36936 * 134.45937 * 204.26695 * 16 15 14 18 18 H 1.07995 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99815 * 0.03812 * 17 16 15 20 20 N 1.31623 * 120.00445 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47106 * 59.99377 * 21 19 17 23 23 H 1.48498 * 109.47014 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46883 * 299.99782 * 21 19 17 25 25 C 1.47672 * 91.08094 * 24.29612 * 16 15 14 26 26 C 1.47342 * 121.05219 * 0.39316 * 10 8 7 27 27 N 1.32085 * 119.11426 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46973 * 299.99289 * 1 2 3 29 29 H 1.08989 * 109.47755 * 59.99353 * 1 2 3 30 30 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.39219 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.80854 * 180.25217 * 6 5 4 33 33 H 1.08999 * 109.59888 * 112.48890 * 11 10 8 34 34 H 1.08991 * 109.59560 * 352.02500 * 11 10 8 35 35 H 1.09005 * 109.49689 * 65.81875 * 12 11 10 36 36 H 1.09007 * 109.49146 * 185.89289 * 12 11 10 37 37 H 1.08997 * 113.79724 * 205.53594 * 15 14 13 38 38 H 1.09008 * 113.79280 * 337.00806 * 15 14 13 39 39 H 0.96996 * 119.99982 * 179.97438 * 20 19 17 40 40 H 1.09003 * 113.78885 * 221.43859 * 25 16 15 41 41 H 1.08996 * 113.90297 * 89.98063 * 25 16 15 42 42 H 1.09001 * 109.74849 * 251.24269 * 26 10 8 43 43 H 1.09002 * 109.74356 * 11.95816 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2071 0.0000 4 7 1.3056 2.3063 -0.0005 5 6 1.8669 3.5026 0.0000 6 6 3.2514 3.6014 0.0064 7 6 4.0002 2.4248 0.0012 8 6 5.4839 2.4754 0.0024 9 8 6.0554 3.5343 0.1699 10 7 6.1968 1.3468 -0.1824 11 6 7.6679 1.3690 -0.1774 12 6 8.1743 0.6859 -1.4521 13 8 7.5974 -0.6198 -1.5514 14 6 6.1735 -0.6213 -1.6077 15 6 5.6071 -0.1396 -2.9501 16 7 5.6365 -1.5597 -3.3537 17 6 5.7004 -2.2144 -4.5547 18 1 5.7084 -3.2940 -4.5815 19 6 5.7552 -1.4903 -5.7377 20 7 5.7451 -0.1745 -5.7051 21 14 5.8431 -2.3833 -7.3762 22 1 4.6427 -3.2426 -7.5366 23 1 5.8915 -1.3902 -8.4792 24 1 7.0646 -3.2270 -7.4151 25 6 5.5685 -1.9910 -1.9430 26 6 5.5277 0.0516 -0.3963 27 7 3.3639 1.2559 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2556 4.3929 -0.0009 32 1 3.7371 4.5661 0.0110 33 1 8.0387 0.8332 0.6964 34 1 8.0179 2.4009 -0.1519 35 1 7.8864 1.2779 -2.3210 36 1 9.2604 0.6017 -1.4127 37 1 4.6022 0.2768 -2.8794 38 1 6.2923 0.4924 -3.5152 39 1 5.7837 0.3314 -6.5318 40 1 6.2231 -2.8303 -1.7078 41 1 4.5530 -2.1261 -1.5709 42 1 5.6532 -0.5777 0.4849 43 1 4.4666 0.2124 -0.5865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053336430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = 15.959903 kcal Electronic energy + Delta-G solvation = -30159.231638 eV Core-core repulsion = 26015.355544 eV Total energy + Delta-G solvation = -4143.876093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70530 -41.54351 -40.28499 -39.20457 -37.69324 -36.18001 -34.99979 -34.25583 -32.66151 -31.50748 -29.68698 -28.50601 -27.80526 -26.90200 -26.45003 -25.28470 -24.32544 -23.50970 -21.52006 -20.44383 -19.46162 -19.41014 -18.82111 -17.90371 -17.70305 -17.62105 -17.14970 -16.88782 -16.74707 -16.40770 -15.89431 -15.78768 -15.56951 -15.39163 -15.17600 -14.90585 -14.85070 -14.74652 -14.19504 -13.99102 -13.42914 -13.25040 -12.91530 -12.85091 -12.74598 -12.61200 -12.38226 -12.23276 -12.11116 -12.08348 -11.89750 -11.71409 -11.66686 -11.34895 -10.96650 -10.83609 -10.23419 -9.95627 -9.61614 -8.94746 -7.91469 -5.25607 -0.71128 -0.13500 1.33849 1.42500 1.46596 1.47706 1.53024 1.70871 2.45330 2.59147 2.67378 2.76923 3.05533 3.26871 3.34526 3.44511 3.67924 3.75191 3.78438 3.92539 4.12631 4.21128 4.28810 4.37717 4.42190 4.49117 4.55551 4.63473 4.69585 4.73068 4.75607 4.81132 4.90205 4.92631 5.02313 5.10757 5.23550 5.36886 5.43319 5.47688 5.87701 6.01545 6.07438 6.34235 6.65678 6.84196 6.87766 7.57881 8.51823 9.25146 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004574 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.474420 B = 6119.844891 C = 7511.451360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.485 3.515 4 N -0.554 5.554 5 C 0.207 3.793 6 C -0.202 4.202 7 C 0.149 3.851 8 C 0.570 3.430 9 O -0.547 6.547 10 N -0.587 5.587 11 C 0.081 3.919 12 C 0.047 3.953 13 O -0.365 6.365 14 C 0.071 3.929 15 C 0.159 3.841 16 N -0.633 5.633 17 C -0.232 4.232 18 H 0.087 0.913 19 C -0.070 4.070 20 N -0.958 5.958 21 Si 0.982 3.018 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.138 3.862 26 C 0.064 3.936 27 N -0.515 5.515 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.233 0.767 32 H 0.183 0.817 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.029 0.971 36 H 0.133 0.867 37 H 0.010 0.990 38 H 0.035 0.965 39 H 0.247 0.753 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 7.080 16.899 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.183 3.817 4 N -0.284 5.284 5 C 0.040 3.960 6 C -0.225 4.225 7 C 0.004 3.996 8 C 0.356 3.644 9 O -0.425 6.425 10 N -0.318 5.318 11 C -0.041 4.041 12 C -0.030 4.030 13 O -0.283 6.283 14 C 0.029 3.971 15 C 0.033 3.967 16 N -0.359 5.359 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.607 5.607 21 Si 0.810 3.190 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.013 3.987 26 C -0.060 4.060 27 N -0.244 5.244 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.200 0.800 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.048 0.952 36 H 0.151 0.849 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.148 6.175 16.654 19.541 hybrid contribution 0.239 0.596 -1.402 1.542 sum -7.909 6.770 15.252 18.467 Atomic orbital electron populations 1.23304 0.73429 1.05536 1.03236 1.86123 1.25616 1.22292 1.86596 1.21029 0.85877 0.85887 0.88932 1.68140 1.41210 0.99662 1.19376 1.23966 0.91930 0.95201 0.84864 1.23063 0.96288 1.00457 1.02704 1.21430 0.94208 0.89397 0.94527 1.17956 0.85564 0.83541 0.77333 1.90746 1.70670 1.29355 1.51693 1.48164 1.07661 1.08117 1.67824 1.22479 0.78418 1.03883 0.99333 1.23062 1.00027 0.84016 0.95890 1.87865 1.18366 1.28072 1.94019 1.23365 0.81879 0.98104 0.93734 1.22419 0.95554 0.87765 0.90980 1.46147 1.85751 1.03035 1.00947 1.19410 1.42301 0.91161 0.83092 0.89544 1.25666 1.02992 0.96390 1.01179 1.70033 1.58417 1.05804 1.26440 0.85099 0.78392 0.77029 0.78502 1.20027 1.22085 1.20141 1.22671 0.98190 0.94350 0.83536 1.23748 1.02653 0.82473 0.97084 1.67342 1.08340 1.28255 1.20485 0.90665 0.91914 0.85449 0.75035 0.79969 0.87886 0.87381 0.95215 0.84904 0.97271 0.94702 0.94455 0.91838 0.90981 0.89263 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.36 113.37 1.17 1.83 16 2 O -0.31 -8.02 10.56 -87.71 -0.93 -8.95 16 3 C 0.48 13.30 8.48 180.61 1.53 14.83 16 4 N -0.55 -12.12 9.20 -313.45 -2.88 -15.00 16 5 C 0.21 3.32 11.30 84.78 0.96 4.28 16 6 C -0.20 -4.14 9.71 22.70 0.22 -3.92 16 7 C 0.15 4.25 6.67 41.98 0.28 4.53 16 8 C 0.57 18.15 7.71 86.97 0.67 18.82 16 9 O -0.55 -18.41 15.92 -3.66 -0.06 -18.47 16 10 N -0.59 -18.76 3.03 -820.56 -2.48 -21.25 16 11 C 0.08 2.24 6.60 86.34 0.57 2.81 16 12 C 0.05 1.55 6.88 72.06 0.50 2.05 16 13 O -0.36 -14.85 10.52 -148.98 -1.57 -16.42 16 14 C 0.07 2.91 1.21 -10.49 -0.01 2.90 16 15 C 0.16 8.21 6.65 86.30 0.57 8.79 16 16 N -0.63 -34.63 3.70 -729.27 -2.70 -37.33 16 17 C -0.23 -13.64 10.70 84.03 0.90 -12.74 16 18 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.96 -60.58 11.39 21.65 0.25 -60.33 16 21 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 C 0.14 5.93 8.33 86.30 0.72 6.65 16 26 C 0.06 2.14 5.35 86.18 0.46 2.60 16 27 N -0.51 -15.53 6.22 -302.70 -1.88 -17.42 16 28 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.18 3.01 7.76 -2.91 -0.02 2.99 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.11 2.85 7.06 -2.39 -0.02 2.83 16 35 H 0.03 1.15 7.20 -2.38 -0.02 1.14 16 36 H 0.13 3.46 8.14 -2.38 -0.02 3.44 16 37 H 0.01 0.52 7.94 -2.39 -0.02 0.50 16 38 H 0.03 2.06 6.31 -2.38 -0.02 2.04 16 39 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 2.83 8.09 -2.39 -0.02 2.81 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.16 5.69 3.69 -72.63 -0.27 5.42 16 Total: -1.00 -80.51 356.00 -0.43 -80.94 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.79 Total: 15.07 kcal Atomic # 6 Polarization: 40.72 SS G_CDS: 9.01 Total: 49.73 kcal Atomic # 7 Polarization: -141.62 SS G_CDS: -9.71 Total: -151.33 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -2.55 Total: -43.84 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.51 -0.43 -80.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053336430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.896 kcal (2) G-P(sol) polarization free energy of solvation -80.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds