Wall clock time and date at job start Tue Mar 31 2020 17:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35507 * 117.00102 * 2 1 4 4 C 1.39643 * 120.49077 * 179.97438 * 3 2 1 5 5 C 1.39148 * 118.20840 * 179.97438 * 4 3 2 6 6 C 1.48441 * 120.51758 * 179.97438 * 5 4 3 7 7 O 1.21480 * 120.00510 * 359.72741 * 6 5 4 8 8 N 1.34784 * 119.99835 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72758 * 8 6 5 10 10 H 1.08994 * 110.73506 * 36.96236 * 9 8 6 11 11 C 1.54466 * 110.82426 * 273.54538 * 9 8 6 12 12 O 1.43521 * 107.57701 * 220.41481 * 11 9 8 13 13 C 1.42546 * 109.63779 * 359.36662 * 12 11 9 14 14 C 1.52954 * 116.15835 * 253.33863 * 13 12 11 15 15 N 1.47775 * 85.80272 * 218.94364 * 14 13 12 16 16 C 1.36936 * 134.40565 * 203.94396 * 15 14 13 17 17 H 1.08003 * 119.99586 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00218 * 359.96471 * 16 15 14 19 19 N 1.31619 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46964 * 89.99932 * 20 18 16 22 22 H 1.48498 * 109.46818 * 210.00097 * 20 18 16 23 23 H 1.48498 * 109.47175 * 330.00139 * 20 18 16 24 24 C 1.47769 * 91.18523 * 23.91568 * 15 14 13 25 25 C 1.54006 * 106.48630 * 23.03738 * 13 12 11 26 26 N 1.33287 * 118.95998 * 0.25556 * 5 4 3 27 27 C 1.31526 * 120.88443 * 359.48391 * 26 5 4 28 28 N 1.31889 * 121.99017 * 0.53064 * 27 26 5 29 29 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46585 * 299.99755 * 1 2 3 31 31 H 1.09000 * 109.46986 * 59.99214 * 1 2 3 32 32 H 1.08004 * 120.89739 * 0.02562 * 4 3 2 33 33 H 0.97005 * 119.99846 * 359.72546 * 8 6 5 34 34 H 1.09005 * 109.83479 * 339.92154 * 11 9 8 35 35 H 1.08996 * 109.83171 * 100.80984 * 11 9 8 36 36 H 1.09000 * 113.81409 * 333.15871 * 14 13 12 37 37 H 1.08997 * 113.81939 * 104.71859 * 14 13 12 38 38 H 0.96996 * 119.99691 * 180.02562 * 19 18 16 39 39 H 1.08993 * 113.82524 * 221.86221 * 24 15 14 40 40 H 1.09004 * 113.92807 * 90.31197 * 24 15 14 41 41 H 1.09003 * 111.15335 * 206.96395 * 25 13 12 42 42 H 1.09000 * 111.15596 * 82.72165 * 25 13 12 43 43 H 1.08004 * 119.00212 * 180.28907 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4381 1.2924 0.0005 5 6 4.0200 2.5563 0.0000 6 6 5.4968 2.7063 0.0011 7 8 6.2075 1.7211 0.0075 8 7 6.0493 3.9357 0.0000 9 6 7.5068 4.0838 0.0071 10 1 7.9762 3.3105 -0.6009 11 6 8.0546 4.0551 1.4511 12 8 9.0868 5.0480 1.5428 13 6 9.2479 5.6897 0.2802 14 6 10.5048 5.3194 -0.5089 15 7 10.5586 6.7477 -0.8839 16 6 11.1095 7.4448 -1.9259 17 1 11.0055 8.5188 -1.9720 18 6 11.8019 6.7710 -2.9227 19 7 11.9284 5.4621 -2.8665 20 14 12.5541 7.7220 -4.3437 21 1 13.9414 8.1200 -3.9937 22 1 12.5759 6.8651 -5.5562 23 1 11.7431 8.9369 -4.6106 24 6 9.7797 7.1233 0.3144 25 6 7.9206 5.5018 -0.4780 26 7 3.2305 3.6302 0.0041 27 6 1.9212 3.5057 -0.0014 28 7 1.3315 2.3259 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 4.0481 0.4011 0.0005 33 1 5.4818 4.7225 -0.0056 34 1 7.2550 4.2869 2.1547 35 1 8.4664 3.0701 1.6708 36 1 11.3376 4.9967 0.1159 37 1 10.3162 4.6505 -1.3487 38 1 12.4126 4.9914 -3.5628 39 1 9.0182 7.8798 0.1253 40 1 10.3923 7.3447 1.1884 41 1 8.0780 5.5181 -1.5565 42 1 7.1869 6.2500 -0.1781 43 1 1.3104 4.3964 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053804627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:54 Heat of formation + Delta-G solvation = 6.323277 kcal Electronic energy + Delta-G solvation = -28076.142781 eV Core-core repulsion = 23931.848813 eV Total energy + Delta-G solvation = -4144.293969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79803 -40.31315 -39.37900 -38.69862 -36.30116 -34.70878 -33.79792 -32.28169 -32.08702 -30.34694 -28.28803 -28.01077 -25.83794 -25.37189 -24.91614 -24.72258 -22.17339 -21.91399 -20.83073 -19.32696 -18.83547 -18.64003 -16.88097 -16.77268 -16.66265 -16.55338 -15.89944 -15.68963 -15.36277 -15.24859 -15.08780 -14.85427 -14.61421 -14.35319 -14.22310 -13.73284 -13.41913 -12.88070 -12.64336 -12.57289 -12.19339 -11.99825 -11.67083 -11.45538 -11.33415 -11.12629 -10.92667 -10.85241 -10.83095 -10.80203 -10.58545 -10.30689 -10.01563 -9.90949 -9.66706 -9.56665 -9.19441 -8.81709 -8.74841 -6.91921 -5.78496 -3.11638 0.06234 0.53082 2.21294 2.44486 2.80973 3.38785 3.39864 3.43322 3.45718 3.51592 3.52651 4.18857 4.28471 4.47179 4.49304 4.60134 4.70687 4.77598 4.82789 5.07625 5.10293 5.11754 5.20274 5.23101 5.32584 5.39461 5.54252 5.58812 5.86939 5.94648 6.08989 6.19136 6.29928 6.34809 6.42098 6.54617 6.58251 6.69042 7.02307 7.21241 7.22021 7.48917 7.50275 7.69324 7.88568 7.94945 9.02233 9.68160 10.55814 11.38583 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002233 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.858680 B =12534.645885 C =12941.945047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.365 3.635 4 C -0.183 4.183 5 C 0.161 3.839 6 C 0.570 3.430 7 O -0.516 6.516 8 N -0.690 5.690 9 C 0.109 3.891 10 H 0.110 0.890 11 C 0.046 3.954 12 O -0.367 6.367 13 C 0.056 3.944 14 C 0.157 3.843 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.130 3.870 25 C -0.120 4.120 26 N -0.518 5.518 27 C 0.337 3.663 28 N -0.565 5.565 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.167 0.833 33 H 0.414 0.586 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.410 -7.660 7.264 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.176 3.824 4 C -0.207 4.207 5 C 0.017 3.983 6 C 0.353 3.647 7 O -0.390 6.390 8 N -0.342 5.342 9 C 0.005 3.995 10 H 0.128 0.872 11 C -0.032 4.032 12 O -0.285 6.285 13 C 0.015 3.985 14 C 0.031 3.969 15 N -0.333 5.333 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.003 3.997 25 C -0.158 4.158 26 N -0.240 5.240 27 C 0.049 3.951 28 N -0.297 5.297 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -24.002 -7.825 7.156 26.240 hybrid contribution 0.250 0.131 -0.883 0.927 sum -23.752 -7.693 6.273 25.743 Atomic orbital electron populations 1.23030 0.76114 1.03762 1.02959 1.86276 1.23778 1.23519 1.86422 1.20040 0.89226 0.85224 0.87867 1.21938 0.92762 1.00695 1.05333 1.21419 0.94923 0.88703 0.93243 1.17694 0.85268 0.84167 0.77591 1.90845 1.61265 1.37976 1.48951 1.45775 1.07764 1.08021 1.72639 1.22788 0.78976 1.00094 0.97675 0.87178 1.23443 0.91102 0.93162 0.95506 1.88315 1.55664 1.51973 1.32555 1.24197 0.95666 0.95792 0.82819 1.22562 0.91037 0.88504 0.94777 1.45724 1.63415 1.03332 1.20841 1.18967 1.27917 0.90754 0.97272 0.90055 1.24805 1.00691 0.95845 0.99064 1.69819 1.45920 1.05983 1.34867 0.86106 0.79212 0.78623 0.81723 1.21582 1.21627 1.20591 1.22551 0.93643 0.92530 0.90934 1.22976 0.96343 0.93616 1.02910 1.68375 1.06718 1.32888 1.15979 1.24726 0.87946 0.93887 0.88556 1.68060 1.42029 0.99340 1.20222 0.87906 0.91744 0.91728 0.81495 0.74931 0.91690 0.90919 0.94640 0.90549 0.93534 0.93228 0.93846 0.88064 0.90228 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.41 101.05 1.05 1.24 16 2 O -0.30 -2.56 10.49 -18.21 -0.19 -2.75 16 3 C 0.36 3.51 7.54 -16.68 -0.13 3.39 16 4 C -0.18 -1.91 9.68 -38.72 -0.37 -2.28 16 5 C 0.16 1.80 6.79 -82.69 -0.56 1.23 16 6 C 0.57 7.46 7.83 -12.05 -0.09 7.37 16 7 O -0.52 -8.21 16.15 5.38 0.09 -8.13 16 8 N -0.69 -8.46 5.13 -52.54 -0.27 -8.73 16 9 C 0.11 1.60 3.29 -65.84 -0.22 1.38 16 10 H 0.11 1.80 7.71 -51.93 -0.40 1.40 16 11 C 0.05 0.70 7.57 37.93 0.29 0.99 16 12 O -0.37 -6.75 11.17 -35.23 -0.39 -7.15 16 13 C 0.06 1.08 1.48 -90.30 -0.13 0.94 16 14 C 0.16 3.75 6.99 -3.37 -0.02 3.73 16 15 N -0.60 -15.39 3.69 -183.20 -0.68 -16.07 16 16 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.07 11.40 55.49 0.63 -26.44 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.13 2.70 8.49 -3.38 -0.03 2.67 16 25 C -0.12 -1.93 6.02 -24.89 -0.15 -2.08 16 26 N -0.52 -5.01 9.70 -11.20 -0.11 -5.12 16 27 C 0.34 2.63 12.27 -92.30 -1.13 1.50 16 28 N -0.57 -4.98 9.36 -14.65 -0.14 -5.12 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.17 1.68 7.73 -52.48 -0.41 1.27 16 33 H 0.41 4.32 7.89 -40.82 -0.32 4.00 16 34 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.97 7.16 -51.93 -0.37 1.60 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.82 8.05 -51.93 -0.42 1.40 16 42 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 43 H 0.21 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -33.12 368.15 -7.96 -41.09 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.67 Total: 2.43 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -1.76 Total: 13.49 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.56 Total: -61.47 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.50 Total: -18.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.12 -7.96 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053804627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.411 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds