Wall clock time and date at job start Tue Mar 31 2020 17:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35507 * 117.00102 * 2 1 4 4 C 1.39643 * 120.49077 * 179.97438 * 3 2 1 5 5 C 1.39148 * 118.20840 * 179.97438 * 4 3 2 6 6 C 1.48441 * 120.51758 * 179.97438 * 5 4 3 7 7 O 1.21480 * 120.00510 * 359.72741 * 6 5 4 8 8 N 1.34784 * 119.99835 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72758 * 8 6 5 10 10 H 1.08994 * 110.73506 * 36.96236 * 9 8 6 11 11 C 1.54466 * 110.82426 * 273.54538 * 9 8 6 12 12 O 1.43521 * 107.57701 * 220.41481 * 11 9 8 13 13 C 1.42546 * 109.63779 * 359.36662 * 12 11 9 14 14 C 1.52954 * 116.15835 * 253.33863 * 13 12 11 15 15 N 1.47775 * 85.80272 * 218.94364 * 14 13 12 16 16 C 1.36936 * 134.40565 * 203.94396 * 15 14 13 17 17 H 1.08003 * 119.99586 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00218 * 359.96471 * 16 15 14 19 19 N 1.31619 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46964 * 89.99932 * 20 18 16 22 22 H 1.48498 * 109.46818 * 210.00097 * 20 18 16 23 23 H 1.48498 * 109.47175 * 330.00139 * 20 18 16 24 24 C 1.47769 * 91.18523 * 23.91568 * 15 14 13 25 25 C 1.54006 * 106.48630 * 23.03738 * 13 12 11 26 26 N 1.33287 * 118.95998 * 0.25556 * 5 4 3 27 27 C 1.31526 * 120.88443 * 359.48391 * 26 5 4 28 28 N 1.31889 * 121.99017 * 0.53064 * 27 26 5 29 29 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46585 * 299.99755 * 1 2 3 31 31 H 1.09000 * 109.46986 * 59.99214 * 1 2 3 32 32 H 1.08004 * 120.89739 * 0.02562 * 4 3 2 33 33 H 0.97005 * 119.99846 * 359.72546 * 8 6 5 34 34 H 1.09005 * 109.83479 * 339.92154 * 11 9 8 35 35 H 1.08996 * 109.83171 * 100.80984 * 11 9 8 36 36 H 1.09000 * 113.81409 * 333.15871 * 14 13 12 37 37 H 1.08997 * 113.81939 * 104.71859 * 14 13 12 38 38 H 0.96996 * 119.99691 * 180.02562 * 19 18 16 39 39 H 1.08993 * 113.82524 * 221.86221 * 24 15 14 40 40 H 1.09004 * 113.92807 * 90.31197 * 24 15 14 41 41 H 1.09003 * 111.15335 * 206.96395 * 25 13 12 42 42 H 1.09000 * 111.15596 * 82.72165 * 25 13 12 43 43 H 1.08004 * 119.00212 * 180.28907 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4381 1.2924 0.0005 5 6 4.0200 2.5563 0.0000 6 6 5.4968 2.7063 0.0011 7 8 6.2075 1.7211 0.0075 8 7 6.0493 3.9357 0.0000 9 6 7.5068 4.0838 0.0071 10 1 7.9762 3.3105 -0.6009 11 6 8.0546 4.0551 1.4511 12 8 9.0868 5.0480 1.5428 13 6 9.2479 5.6897 0.2802 14 6 10.5048 5.3194 -0.5089 15 7 10.5586 6.7477 -0.8839 16 6 11.1095 7.4448 -1.9259 17 1 11.0055 8.5188 -1.9720 18 6 11.8019 6.7710 -2.9227 19 7 11.9284 5.4621 -2.8665 20 14 12.5541 7.7220 -4.3437 21 1 13.9414 8.1200 -3.9937 22 1 12.5759 6.8651 -5.5562 23 1 11.7431 8.9369 -4.6106 24 6 9.7797 7.1233 0.3144 25 6 7.9206 5.5018 -0.4780 26 7 3.2305 3.6302 0.0041 27 6 1.9212 3.5057 -0.0014 28 7 1.3315 2.3259 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 4.0481 0.4011 0.0005 33 1 5.4818 4.7225 -0.0056 34 1 7.2550 4.2869 2.1547 35 1 8.4664 3.0701 1.6708 36 1 11.3376 4.9967 0.1159 37 1 10.3162 4.6505 -1.3487 38 1 12.4126 4.9914 -3.5628 39 1 9.0182 7.8798 0.1253 40 1 10.3923 7.3447 1.1884 41 1 8.0780 5.5181 -1.5565 42 1 7.1869 6.2500 -0.1781 43 1 1.3104 4.3964 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053804627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:53 Heat of formation + Delta-G solvation = -19.213620 kcal Electronic energy + Delta-G solvation = -28077.250144 eV Core-core repulsion = 23931.848813 eV Total energy + Delta-G solvation = -4145.401332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.53781 -41.62907 -40.52574 -39.45808 -37.92651 -35.92530 -34.56849 -34.12877 -32.98879 -31.62669 -29.90953 -28.66789 -27.51960 -26.73282 -26.17972 -25.39779 -23.90928 -23.05251 -21.98111 -20.43437 -20.10005 -19.44365 -18.75535 -17.80132 -17.64461 -17.38426 -17.09145 -16.67466 -16.58795 -16.47346 -16.20740 -16.15941 -15.73705 -15.57122 -15.18286 -15.03898 -14.70254 -14.40937 -14.25165 -13.70152 -13.39677 -12.99743 -12.89752 -12.83024 -12.73749 -12.68774 -12.60516 -12.38035 -12.03066 -12.00375 -11.78483 -11.67347 -11.56785 -11.49015 -10.87212 -10.69022 -10.39678 -10.34435 -10.27915 -8.96801 -7.90670 -5.25677 -0.74074 -0.15767 1.45061 1.47134 1.49348 1.50330 1.57989 1.94741 2.44346 2.64110 2.69576 2.85817 2.94105 3.19123 3.34114 3.47650 3.55481 3.70058 3.74281 3.75909 3.97841 4.02688 4.06850 4.39392 4.39727 4.44640 4.62615 4.68110 4.71084 4.75876 4.79992 4.85189 4.93677 4.99047 5.02213 5.14753 5.21482 5.28119 5.49644 5.51487 5.87375 5.91607 6.15672 6.25344 6.77190 6.89413 6.90258 7.58962 8.52514 9.26357 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002233 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.858680 B =12534.645885 C =12941.945047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.364 3.636 4 C -0.193 4.193 5 C 0.154 3.846 6 C 0.571 3.429 7 O -0.550 6.550 8 N -0.677 5.677 9 C 0.121 3.879 10 H 0.088 0.912 11 C 0.045 3.955 12 O -0.377 6.377 13 C 0.078 3.922 14 C 0.150 3.850 15 N -0.629 5.629 16 C -0.230 4.230 17 H 0.091 0.909 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.981 3.019 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.263 1.263 24 C 0.130 3.870 25 C -0.109 4.109 26 N -0.522 5.522 27 C 0.341 3.659 28 N -0.564 5.564 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.426 0.574 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.009 0.991 37 H 0.049 0.951 38 H 0.248 0.752 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.298 -6.183 7.743 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.175 3.825 4 C -0.218 4.218 5 C 0.010 3.990 6 C 0.356 3.644 7 O -0.427 6.427 8 N -0.330 5.330 9 C 0.016 3.984 10 H 0.106 0.894 11 C -0.033 4.033 12 O -0.294 6.294 13 C 0.037 3.963 14 C 0.024 3.976 15 N -0.357 5.357 16 C -0.358 4.358 17 H 0.109 0.891 18 C -0.261 4.261 19 N -0.603 5.603 20 Si 0.809 3.191 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.187 1.187 24 C 0.006 3.994 25 C -0.147 4.147 26 N -0.244 5.244 27 C 0.054 3.946 28 N -0.295 5.295 29 H 0.145 0.855 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.265 0.735 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.133 0.867 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -26.943 -6.311 7.666 28.715 hybrid contribution 1.056 -0.376 -0.951 1.470 sum -25.888 -6.688 6.715 27.568 Atomic orbital electron populations 1.23299 0.74297 1.05536 1.03214 1.86272 1.25595 1.23178 1.86050 1.20102 0.89032 0.85877 0.87498 1.21934 0.93425 1.00408 1.06033 1.21064 0.93789 0.89505 0.94601 1.17975 0.86173 0.83678 0.76616 1.90829 1.62370 1.39047 1.50452 1.45568 1.06641 1.08469 1.72294 1.22429 0.80374 0.98653 0.96963 0.89416 1.23595 0.90992 0.92394 0.96271 1.88297 1.56944 1.52613 1.31595 1.23709 0.95115 0.94391 0.83111 1.22456 0.92939 0.87844 0.94332 1.46029 1.63729 1.04055 1.21932 1.19408 1.27164 0.91447 0.97782 0.89109 1.25683 1.01806 0.96736 1.01904 1.70027 1.47073 1.07592 1.35595 0.85036 0.78213 0.77683 0.78139 1.21635 1.22234 1.18726 1.22692 0.93591 0.94035 0.89130 1.22861 0.95299 0.95320 1.01191 1.68394 1.07461 1.32102 1.16411 1.25562 0.87567 0.94780 0.86695 1.68172 1.41833 0.99402 1.20137 0.85500 0.91367 0.91498 0.81986 0.73466 0.89030 0.91140 0.97320 0.93302 0.94279 0.90381 0.93659 0.90115 0.86690 0.73642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.41 113.37 1.18 1.44 16 2 O -0.31 -4.93 10.49 -88.09 -0.92 -5.85 16 3 C 0.36 6.53 7.54 84.91 0.64 7.17 16 4 C -0.19 -3.93 9.68 22.83 0.22 -3.71 16 5 C 0.15 3.27 6.79 41.86 0.28 3.55 16 6 C 0.57 14.64 7.83 86.96 0.68 15.32 16 7 O -0.55 -17.80 16.15 -3.65 -0.06 -17.86 16 8 N -0.68 -15.60 5.13 -438.44 -2.25 -17.85 16 9 C 0.12 3.48 3.29 46.34 0.15 3.63 16 10 H 0.09 2.96 7.71 -2.39 -0.02 2.94 16 11 C 0.05 1.31 7.57 72.48 0.55 1.86 16 12 O -0.38 -13.47 11.17 -148.98 -1.66 -15.13 16 13 C 0.08 2.96 1.48 -10.44 -0.02 2.95 16 14 C 0.15 7.48 6.99 86.12 0.60 8.08 16 15 N -0.63 -32.33 3.69 -739.64 -2.73 -35.06 16 16 C -0.23 -12.76 10.70 84.03 0.90 -11.86 16 17 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 19 N -0.95 -58.19 11.40 21.65 0.25 -57.94 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 24 C 0.13 5.27 8.49 86.11 0.73 6.00 16 25 C -0.11 -3.35 6.02 31.79 0.19 -3.16 16 26 N -0.52 -8.87 9.70 -189.36 -1.84 -10.70 16 27 C 0.34 4.32 12.27 180.94 2.22 6.54 16 28 N -0.56 -8.63 9.36 -313.02 -2.93 -11.57 16 29 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 32 H 0.16 3.35 7.73 -2.91 -0.02 3.33 16 33 H 0.43 7.78 7.89 -92.70 -0.73 7.05 16 34 H 0.09 2.23 8.02 -2.38 -0.02 2.21 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 2.67 7.16 -2.39 -0.02 2.65 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.89 8.05 -2.39 -0.02 2.87 16 42 H 0.11 2.76 7.98 -2.39 -0.02 2.74 16 43 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -73.51 368.15 -1.00 -74.50 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.32 Total: 15.46 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 8.80 Total: 34.39 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -9.50 Total: -133.13 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.65 Total: -38.84 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.51 -1.00 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053804627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.291 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds