Wall clock time and date at job start Tue Mar 31 2020 17:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35294 * 116.99820 * 2 1 4 4 N 1.32473 * 119.02057 * 179.97438 * 3 2 1 5 5 C 1.32012 * 120.91928 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98481 * 0.02562 * 5 4 3 7 7 C 1.47628 * 120.88188 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99867 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00238 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00497 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.96938 * 37.69467 * 10 9 7 12 12 C 1.55018 * 111.10500 * 273.55112 * 10 9 7 13 13 O 1.43913 * 105.17909 * 206.02828 * 12 10 9 14 14 C 1.42392 * 109.56030 * 24.28780 * 13 12 10 15 15 C 1.52695 * 116.14358 * 129.85221 * 14 13 12 16 16 N 1.47208 * 87.79805 * 90.70703 * 15 14 13 17 17 C 1.36939 * 135.97448 * 206.44002 * 16 15 14 18 18 H 1.08000 * 120.00268 * 7.80017 * 17 16 15 19 19 C 1.38815 * 119.99923 * 187.80519 * 17 16 15 20 20 N 1.31619 * 119.99944 * 195.32460 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 15.31605 * 19 17 16 22 22 H 1.48499 * 109.47280 * 270.00336 * 21 19 17 23 23 H 1.48493 * 109.47130 * 30.00655 * 21 19 17 24 24 H 1.48501 * 109.46890 * 150.00432 * 21 19 17 25 25 C 1.47205 * 88.05436 * 26.69228 * 16 15 14 26 26 C 1.53655 * 108.53110 * 358.09268 * 14 13 12 27 27 C 1.40060 * 118.23775 * 0.24724 * 6 5 4 28 28 N 1.32017 * 118.98264 * 359.49236 * 27 6 5 29 29 H 1.09002 * 109.47186 * 59.99814 * 1 2 3 30 30 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46955 * 299.99989 * 1 2 3 32 32 H 1.07995 * 120.51119 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99953 * 0.02562 * 9 7 6 34 34 H 1.08995 * 110.30624 * 87.10142 * 12 10 9 35 35 H 1.09002 * 110.38292 * 324.98918 * 12 10 9 36 36 H 1.09001 * 113.50293 * 335.97298 * 15 14 13 37 37 H 1.09002 * 113.55692 * 205.44499 * 15 14 13 38 38 H 0.97004 * 120.00043 * 354.90587 * 20 19 17 39 39 H 1.09005 * 113.50138 * 88.04142 * 25 16 15 40 40 H 1.09003 * 113.50223 * 218.58333 * 25 16 15 41 41 H 1.09000 * 110.93449 * 97.29764 * 26 14 13 42 42 H 1.09007 * 110.92899 * 220.96032 * 26 14 13 43 43 H 1.08001 * 120.50723 * 179.72260 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3671 1.2522 0.0005 5 6 4.0050 2.4080 0.0000 6 6 3.2604 3.5942 -0.0005 7 6 3.9306 4.9096 -0.0005 8 8 5.1447 4.9732 0.0005 9 7 3.1966 6.0399 -0.0015 10 6 3.8616 7.3453 -0.0009 11 1 4.7570 7.3271 -0.6222 12 6 4.1931 7.8022 1.4428 13 8 4.2359 9.2394 1.3827 14 6 3.4501 9.6943 0.2859 15 6 2.4345 10.7918 0.5952 16 7 3.4801 11.7739 0.2646 17 6 3.7613 13.0678 0.6134 18 1 3.1919 13.5531 1.3923 19 6 4.7783 13.7559 -0.0341 20 7 5.2534 14.8688 0.4838 21 14 5.4726 13.1023 -1.6404 22 1 6.6095 12.1909 -1.3538 23 1 4.4146 12.3594 -2.3710 24 1 5.9457 14.2371 -2.4732 25 6 4.0874 10.7577 -0.6104 26 6 2.8880 8.4700 -0.4531 27 6 1.8630 3.4994 0.0048 28 7 1.3029 2.3040 -0.0001 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.0845 2.4384 0.0009 33 1 2.2279 5.9892 -0.0019 34 1 5.1611 7.4076 1.7515 35 1 3.4148 7.4756 2.1325 36 1 2.1283 10.8185 1.6410 37 1 1.5889 10.8092 -0.0924 38 1 4.8443 15.2477 1.2775 39 1 3.6906 10.7651 -1.6257 40 1 5.1771 10.7554 -0.5827 41 1 1.8688 8.2552 -0.1319 42 1 2.9325 8.6127 -1.5329 43 1 1.2530 4.3907 0.0091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053972428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:03 Heat of formation + Delta-G solvation = 22.103612 kcal Electronic energy + Delta-G solvation = -28002.019073 eV Core-core repulsion = 23858.409391 eV Total energy + Delta-G solvation = -4143.609682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97653 -40.58908 -39.64668 -38.66024 -36.68985 -35.07134 -34.39250 -32.49993 -32.33248 -30.57274 -28.61182 -28.07950 -25.72614 -25.43716 -25.38859 -24.88991 -22.39203 -21.30113 -21.12928 -19.49903 -19.36068 -18.73487 -18.26274 -17.44947 -17.05825 -16.70300 -16.02624 -15.66604 -15.46084 -15.34251 -15.07915 -14.96641 -14.36981 -14.26455 -14.14518 -13.87794 -13.63720 -13.57387 -13.20990 -12.63044 -12.60856 -12.45869 -12.17320 -11.98731 -11.79837 -11.69166 -11.59539 -11.00360 -10.82387 -10.50669 -10.34838 -10.24776 -9.89547 -9.86756 -9.73873 -9.40493 -9.23692 -8.85517 -8.68918 -7.16013 -6.26947 -3.17847 -0.06960 0.38723 1.90780 2.35201 2.55244 3.20933 3.26617 3.43954 3.49009 3.64113 3.78124 3.91726 4.01043 4.13798 4.24517 4.44783 4.62607 4.63252 4.68333 4.69098 4.75998 4.82252 4.90642 5.03106 5.03878 5.09891 5.39832 5.47562 5.59380 5.65898 5.72393 5.79027 5.98982 6.02223 6.13157 6.20324 6.30754 6.40129 6.40965 6.46542 6.97534 7.14235 7.35532 7.43876 7.70645 8.27443 9.01010 9.54564 10.39375 11.23404 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.002125 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.424816 B =13170.948145 C =13477.628244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.284 6.284 3 C 0.518 3.482 4 N -0.525 5.525 5 C 0.253 3.747 6 C -0.284 4.284 7 C 0.575 3.425 8 O -0.524 6.524 9 N -0.712 5.712 10 C 0.112 3.888 11 H 0.111 0.889 12 C 0.040 3.960 13 O -0.331 6.331 14 C 0.071 3.929 15 C 0.113 3.887 16 N -0.616 5.616 17 C -0.302 4.302 18 H 0.081 0.919 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.062 2.938 22 H -0.292 1.292 23 H -0.283 1.283 24 H -0.295 1.295 25 C 0.096 3.904 26 C -0.144 4.144 27 C 0.226 3.774 28 N -0.569 5.569 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.193 0.807 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 -29.953 -2.724 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.184 6.184 3 C 0.217 3.783 4 N -0.249 5.249 5 C 0.086 3.914 6 C -0.292 4.292 7 C 0.361 3.639 8 O -0.401 6.401 9 N -0.365 5.365 10 C 0.008 3.992 11 H 0.129 0.871 12 C -0.039 4.039 13 O -0.248 6.248 14 C 0.030 3.970 15 C -0.013 4.013 16 N -0.343 5.343 17 C -0.428 4.428 18 H 0.099 0.901 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.894 3.106 22 H -0.219 1.219 23 H -0.209 1.209 24 H -0.223 1.223 25 C -0.029 4.029 26 C -0.183 4.183 27 C 0.059 3.941 28 N -0.298 5.298 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.210 0.790 33 H 0.236 0.764 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.948 -30.468 -3.647 32.258 hybrid contribution -1.788 0.561 1.040 2.143 sum -11.736 -29.907 -2.607 32.233 Atomic orbital electron populations 1.23110 0.74986 1.04080 1.03242 1.86097 1.23944 1.22478 1.85852 1.21024 0.86362 0.84919 0.86009 1.67780 1.07248 1.29898 1.20006 1.23442 1.01395 0.84106 0.82502 1.21570 0.96166 0.96680 1.14817 1.17613 0.86868 0.83021 0.76402 1.90850 1.13029 1.87058 1.49124 1.45738 1.10026 1.05289 1.75409 1.22831 0.97271 0.80993 0.98154 0.87061 1.23815 1.02347 0.82272 0.95420 1.88510 1.69746 1.18190 1.48374 1.23146 0.93908 0.91874 0.88120 1.22657 0.92109 0.87154 0.99423 1.46007 1.25714 1.10932 1.51669 1.20086 1.19227 0.86091 1.17396 0.90097 1.25771 0.96118 0.96643 1.03801 1.70895 1.39463 1.22459 1.24571 0.83774 0.75759 0.74757 0.76333 1.21943 1.20948 1.22255 1.23056 0.99080 0.86840 0.93973 1.23175 0.99085 0.93616 1.02411 1.23199 0.91308 0.94759 0.84866 1.68088 1.41000 0.99013 1.21740 0.91488 0.87446 0.91473 0.79025 0.76447 0.89187 0.92131 0.93019 0.93599 0.92878 0.92571 0.92183 0.89663 0.88808 0.80645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.35 101.05 1.05 1.23 16 2 O -0.28 -2.41 10.55 -17.57 -0.19 -2.60 16 3 C 0.52 4.82 8.48 -90.99 -0.77 4.05 16 4 N -0.52 -5.19 10.45 -14.39 -0.15 -5.34 16 5 C 0.25 2.12 10.87 -16.79 -0.18 1.94 16 6 C -0.28 -2.16 5.90 -104.70 -0.62 -2.78 16 7 C 0.58 5.34 7.78 -12.43 -0.10 5.24 16 8 O -0.52 -6.80 16.19 5.29 0.09 -6.71 16 9 N -0.71 -5.44 5.20 -52.51 -0.27 -5.71 16 10 C 0.11 1.21 3.37 -65.54 -0.22 0.99 16 11 H 0.11 1.36 7.74 -51.93 -0.40 0.96 16 12 C 0.04 0.52 7.49 38.22 0.29 0.80 16 13 O -0.33 -6.04 11.18 -35.23 -0.39 -6.43 16 14 C 0.07 1.20 1.75 -90.45 -0.16 1.05 16 15 C 0.11 2.18 8.20 -8.08 -0.07 2.12 16 16 N -0.62 -15.38 3.63 -184.63 -0.67 -16.05 16 17 C -0.30 -8.88 11.03 -15.06 -0.17 -9.05 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 20 N -0.93 -29.92 13.70 55.49 0.76 -29.16 16 21 Si 1.06 26.91 25.51 -169.99 -4.34 22.57 16 22 H -0.29 -7.19 6.97 56.52 0.39 -6.80 16 23 H -0.28 -6.48 5.65 56.52 0.32 -6.16 16 24 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 25 C 0.10 2.02 5.09 -7.94 -0.04 1.98 16 26 C -0.14 -1.57 6.03 -25.07 -0.15 -1.72 16 27 C 0.23 1.36 10.81 -16.79 -0.18 1.18 16 28 N -0.57 -4.42 9.19 -14.39 -0.13 -4.55 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.19 1.35 7.74 -52.49 -0.41 0.94 16 33 H 0.40 1.73 6.63 -40.82 -0.27 1.46 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 38 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 39 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 40 H 0.06 1.36 6.28 -51.93 -0.33 1.03 16 41 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 42 H 0.09 0.93 7.81 -51.92 -0.41 0.53 16 43 H 0.18 0.41 6.53 -52.49 -0.34 0.07 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -38.12 359.09 -6.84 -44.95 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.54 Total: -2.57 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.42 Total: 6.19 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.46 Total: -60.82 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.49 Total: -15.74 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.34 Total: 22.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.12 -6.84 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053972428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.059 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds