Wall clock time and date at job start Tue Mar 31 2020 17:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35294 * 116.99820 * 2 1 4 4 N 1.32473 * 119.02057 * 179.97438 * 3 2 1 5 5 C 1.32012 * 120.91928 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98481 * 0.02562 * 5 4 3 7 7 C 1.47628 * 120.88188 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99867 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00238 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00497 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.96938 * 37.69467 * 10 9 7 12 12 C 1.55018 * 111.10500 * 273.55112 * 10 9 7 13 13 O 1.43913 * 105.17909 * 206.02828 * 12 10 9 14 14 C 1.42392 * 109.56030 * 24.28780 * 13 12 10 15 15 C 1.52695 * 116.14358 * 129.85221 * 14 13 12 16 16 N 1.47208 * 87.79805 * 90.70703 * 15 14 13 17 17 C 1.36939 * 135.97448 * 206.44002 * 16 15 14 18 18 H 1.08000 * 120.00268 * 7.80017 * 17 16 15 19 19 C 1.38815 * 119.99923 * 187.80519 * 17 16 15 20 20 N 1.31619 * 119.99944 * 195.32460 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 15.31605 * 19 17 16 22 22 H 1.48499 * 109.47280 * 270.00336 * 21 19 17 23 23 H 1.48493 * 109.47130 * 30.00655 * 21 19 17 24 24 H 1.48501 * 109.46890 * 150.00432 * 21 19 17 25 25 C 1.47205 * 88.05436 * 26.69228 * 16 15 14 26 26 C 1.53655 * 108.53110 * 358.09268 * 14 13 12 27 27 C 1.40060 * 118.23775 * 0.24724 * 6 5 4 28 28 N 1.32017 * 118.98264 * 359.49236 * 27 6 5 29 29 H 1.09002 * 109.47186 * 59.99814 * 1 2 3 30 30 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46955 * 299.99989 * 1 2 3 32 32 H 1.07995 * 120.51119 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99953 * 0.02562 * 9 7 6 34 34 H 1.08995 * 110.30624 * 87.10142 * 12 10 9 35 35 H 1.09002 * 110.38292 * 324.98918 * 12 10 9 36 36 H 1.09001 * 113.50293 * 335.97298 * 15 14 13 37 37 H 1.09002 * 113.55692 * 205.44499 * 15 14 13 38 38 H 0.97004 * 120.00043 * 354.90587 * 20 19 17 39 39 H 1.09005 * 113.50138 * 88.04142 * 25 16 15 40 40 H 1.09003 * 113.50223 * 218.58333 * 25 16 15 41 41 H 1.09000 * 110.93449 * 97.29764 * 26 14 13 42 42 H 1.09007 * 110.92899 * 220.96032 * 26 14 13 43 43 H 1.08001 * 120.50723 * 179.72260 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3671 1.2522 0.0005 5 6 4.0050 2.4080 0.0000 6 6 3.2604 3.5942 -0.0005 7 6 3.9306 4.9096 -0.0005 8 8 5.1447 4.9732 0.0005 9 7 3.1966 6.0399 -0.0015 10 6 3.8616 7.3453 -0.0009 11 1 4.7570 7.3271 -0.6222 12 6 4.1931 7.8022 1.4428 13 8 4.2359 9.2394 1.3827 14 6 3.4501 9.6943 0.2859 15 6 2.4345 10.7918 0.5952 16 7 3.4801 11.7739 0.2646 17 6 3.7613 13.0678 0.6134 18 1 3.1919 13.5531 1.3923 19 6 4.7783 13.7559 -0.0341 20 7 5.2534 14.8688 0.4838 21 14 5.4726 13.1023 -1.6404 22 1 6.6095 12.1909 -1.3538 23 1 4.4146 12.3594 -2.3710 24 1 5.9457 14.2371 -2.4732 25 6 4.0874 10.7577 -0.6104 26 6 2.8880 8.4700 -0.4531 27 6 1.8630 3.4994 0.0048 28 7 1.3029 2.3040 -0.0001 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.0845 2.4384 0.0009 33 1 2.2279 5.9892 -0.0019 34 1 5.1611 7.4076 1.7515 35 1 3.4148 7.4756 2.1325 36 1 2.1283 10.8185 1.6410 37 1 1.5889 10.8092 -0.0924 38 1 4.8443 15.2477 1.2775 39 1 3.6906 10.7651 -1.6257 40 1 5.1771 10.7554 -0.5827 41 1 1.8688 8.2552 -0.1319 42 1 2.9325 8.6127 -1.5329 43 1 1.2530 4.3907 0.0091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053972428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:02 Heat of formation + Delta-G solvation = -12.463764 kcal Electronic energy + Delta-G solvation = -28003.518027 eV Core-core repulsion = 23858.409391 eV Total energy + Delta-G solvation = -4145.108636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56257 -41.69829 -40.54725 -39.27969 -38.08418 -35.93624 -35.05109 -34.50447 -33.17108 -31.58682 -30.01598 -28.60154 -27.22213 -27.01231 -25.94466 -25.49773 -23.53793 -22.67235 -22.03117 -20.81142 -19.98344 -19.60544 -19.33419 -18.88912 -17.66978 -17.57887 -17.43083 -16.52405 -16.22374 -16.18445 -16.11676 -15.71300 -15.60814 -15.51236 -15.20712 -15.13244 -14.85130 -14.68046 -14.46715 -13.97728 -13.50252 -13.24471 -13.09549 -12.92607 -12.71204 -12.62912 -12.44160 -12.41052 -12.16958 -12.00618 -11.72837 -11.56363 -11.30439 -11.18179 -10.83858 -10.46944 -10.42646 -10.29520 -10.07944 -9.22314 -8.61523 -5.43316 -0.66398 -0.14074 1.39462 1.41121 1.51375 1.66419 1.66517 1.83283 2.57078 2.60890 2.74074 2.78579 3.07533 3.17692 3.26353 3.38524 3.49634 3.50651 3.62410 3.70880 3.82716 4.06931 4.13881 4.35299 4.39123 4.52916 4.60953 4.62604 4.67477 4.69517 4.70648 4.78906 4.81081 4.88015 4.90803 4.95690 5.02984 5.26205 5.33231 5.44738 5.89883 5.96607 6.22582 6.38220 6.71263 6.78684 7.06399 7.36302 8.30282 8.90617 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.002125 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.424816 B =13170.948145 C =13477.628244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.302 6.302 3 C 0.507 3.493 4 N -0.553 5.553 5 C 0.246 3.754 6 C -0.284 4.284 7 C 0.582 3.418 8 O -0.565 6.565 9 N -0.692 5.692 10 C 0.125 3.875 11 H 0.097 0.903 12 C 0.034 3.966 13 O -0.373 6.373 14 C 0.087 3.913 15 C 0.111 3.889 16 N -0.657 5.657 17 C -0.288 4.288 18 H 0.045 0.955 19 C -0.091 4.091 20 N -0.971 5.971 21 Si 1.103 2.897 22 H -0.287 1.287 23 H -0.240 1.240 24 H -0.302 1.302 25 C 0.084 3.916 26 C -0.126 4.126 27 C 0.239 3.761 28 N -0.570 5.570 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.421 0.579 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 -32.870 -4.525 36.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.206 3.794 4 N -0.278 5.278 5 C 0.080 3.920 6 C -0.293 4.293 7 C 0.368 3.632 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.019 3.981 11 H 0.115 0.885 12 C -0.043 4.043 13 O -0.292 6.292 14 C 0.046 3.954 15 C -0.014 4.014 16 N -0.385 5.385 17 C -0.416 4.416 18 H 0.062 0.938 19 C -0.282 4.282 20 N -0.617 5.617 21 Si 0.927 3.073 22 H -0.214 1.214 23 H -0.164 1.164 24 H -0.230 1.230 25 C -0.041 4.041 26 C -0.164 4.164 27 C 0.072 3.928 28 N -0.299 5.299 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.212 0.788 33 H 0.260 0.740 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.722 -33.462 -5.440 36.210 hybrid contribution -1.045 1.371 1.761 2.464 sum -13.767 -32.091 -3.679 35.112 Atomic orbital electron populations 1.23375 0.73083 1.05795 1.03539 1.86082 1.25897 1.22607 1.85636 1.21252 0.86446 0.85651 0.86026 1.67755 1.08040 1.30713 1.21334 1.23567 1.01816 0.84324 0.82306 1.21378 0.96860 0.95329 1.15723 1.17745 0.86310 0.83664 0.75438 1.90848 1.14989 1.87578 1.51049 1.45441 1.10953 1.03645 1.74552 1.22488 0.97226 0.82285 0.96054 0.88505 1.24008 1.02744 0.79868 0.97699 1.88474 1.70311 1.21291 1.49080 1.22850 0.91917 0.93333 0.87349 1.22967 0.92674 0.86076 0.99654 1.46096 1.29088 1.10039 1.53299 1.19925 1.17854 0.88204 1.15574 0.93755 1.27176 0.97397 0.96734 1.06876 1.71015 1.41100 1.24574 1.24987 0.83334 0.76521 0.74533 0.72862 1.21420 1.16373 1.22992 1.23407 0.98029 0.87105 0.95546 1.23140 1.00549 0.89799 1.02935 1.23850 0.90884 0.95500 0.82546 1.68208 1.40578 0.99123 1.22025 0.91081 0.85152 0.91151 0.78759 0.73950 0.90303 0.89958 0.94100 0.89745 0.94659 0.89622 0.94465 0.85559 0.86532 0.76411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.35 113.37 1.17 1.42 16 2 O -0.30 -4.75 10.55 -85.80 -0.91 -5.66 16 3 C 0.51 8.66 8.48 180.48 1.53 10.19 16 4 N -0.55 -10.49 10.45 -312.42 -3.26 -13.75 16 5 C 0.25 3.86 10.87 85.11 0.93 4.78 16 6 C -0.28 -3.54 5.90 -19.92 -0.12 -3.65 16 7 C 0.58 9.04 7.78 86.72 0.67 9.71 16 8 O -0.57 -13.81 16.19 -3.97 -0.06 -13.87 16 9 N -0.69 -7.27 5.20 -438.31 -2.28 -9.54 16 10 C 0.13 2.18 3.37 46.54 0.16 2.34 16 11 H 0.10 2.07 7.74 -2.39 -0.02 2.05 16 12 C 0.03 0.81 7.49 72.67 0.54 1.35 16 13 O -0.37 -13.02 11.18 -148.98 -1.67 -14.68 16 14 C 0.09 2.65 1.75 -10.68 -0.02 2.63 16 15 C 0.11 3.97 8.20 83.38 0.68 4.65 16 16 N -0.66 -32.17 3.63 -739.12 -2.68 -34.85 16 17 C -0.29 -17.37 11.03 84.03 0.93 -16.45 16 18 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 19 C -0.09 -5.61 5.50 84.86 0.47 -5.15 16 20 N -0.97 -65.10 13.70 21.65 0.30 -64.80 16 21 Si 1.10 54.32 25.51 68.60 1.75 56.07 16 22 H -0.29 -13.75 6.97 99.48 0.69 -13.05 16 23 H -0.24 -9.95 5.65 99.48 0.56 -9.39 16 24 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 25 C 0.08 3.28 5.09 83.47 0.42 3.71 16 26 C -0.13 -2.01 6.03 31.67 0.19 -1.82 16 27 C 0.24 1.92 10.81 85.11 0.92 2.84 16 28 N -0.57 -7.17 9.19 -312.41 -2.87 -10.04 16 29 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 32 H 0.20 2.70 7.74 -2.91 -0.02 2.68 16 33 H 0.42 0.90 6.63 -92.71 -0.61 0.28 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 38 H 0.24 16.47 8.73 -92.71 -0.81 15.66 16 39 H 0.09 2.87 6.79 -2.38 -0.02 2.85 16 40 H 0.04 1.62 6.28 -2.39 -0.01 1.61 16 41 H 0.13 1.08 7.96 -2.39 -0.02 1.06 16 42 H 0.12 1.48 7.81 -2.38 -0.02 1.46 16 43 H 0.22 -0.35 6.53 -2.91 -0.02 -0.37 16 Total: -1.00 -89.73 359.09 -2.95 -92.68 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 0.25 Total: 1.89 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 8.48 Total: 16.56 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -10.80 Total: -132.98 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -2.63 Total: -34.21 kcal Atomic # 14 Polarization: 54.32 SS G_CDS: 1.75 Total: 56.07 kcal Total: -89.73 -2.95 -92.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053972428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.218 kcal (2) G-P(sol) polarization free energy of solvation -89.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds